Detail information of BGIOSGA002499_circ_g.1


General Information
CircRNA Name BGIOSGA002499_circ_g.1
ID in PlantcircBase osi_circ_009323
Alias Chr01:1067757_1071549(ZS97RS2), Chr01:1146929_1150526(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 1412888-1415240  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA002499
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA002499_circ_g.2 BGIOSGA002499_circ_g.3 BGIOSGA002499_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   NN-TA
Number of exons covered BGIOSGA002499-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGACGGATCCACCCTCGGACGAAGCCAACGCCATCGACGCCGCCGTTGAGAGGGCGCCGTCGA
GGCCGACGGGGAGAGGGAGAGGGGGAGGGAGGGACGccttgtatgcagcattcacaaattccat
cattgcagaaattgcagtgttaaatcttgtttcttgaatttcctctgtgacctataaaacataa
caatacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGTATGCAGCATTCACAAATTCCATCATTGCAGAAATTGCAGTGTTAAATCTTGTTTCTTG
AATTTCCTCTGTGACCTATAAAACATAACAATACATTATAGTCATCAATCACCAATCACATCAG
CACAACTACAGGAAAAAAATTATCAGTGCATTATCATGTTTAGCAGTAAGGAGACCCTGAGAAT
TGTGTGATGATACAATCTTGAAATAGTCAGTACATAGGCAAAGCTTTTCACAGGGTAACTGATA
GGGGAACAGTTGCAAAGTACCATTACAACTAATCCATCTCAATATTGGAAGCATAAAAGGTACA
AAAATAATTGAAATGGTGGCACAGGCTGTAAAATTAATTAATAGAATTTATATTCCCCAAAGGG
CATGTCATGTATAGGAATTATGTGCCGGGAACTTGGTAAAACTGTACAAATTTCCAAACCAAAC
TGCTAGTAAACCTAAAATTTTGAATGGCTTTCATTTCAGAGTGAATTAGTGAAAAGATGTTATG
TGATCATGCTGTCAACTGTGACGTACTCTTGCAATGCATTTGTGAAGAACTCGGAGCTGATCCA
AGGTTGGTTCCTCATCAGTAACCGTAGTTCCAACTCCATATGATCCATCTGGTAATGGTGTACC
AACTACGAGTCTCCATGTCCTTCCTAGAAATCTATGCACACCTTCAATTCCACCAGTGCTCCAT
GTTTTTGAATCTCTGTGTACATCAGATATTCTGTCAGCTTTCTAAAATGGCTGTAACTTCATCT
GTAATATGGATGCATACCTCAGTGGTCCCATGAACATTTCATATAAGCGGAGAGAATCAGCACC
ATATTCTGAAACCACGTCATCTGGGTTGATGACATTTCCTCGACTTTTACTCATTTTATAAGCA
CGAGCGTTTAGACGTATGTTTGCATCATCCTTCAGTACATAATGATCTCCAACTTTTGTGACCT
TTAAAAACATAGAAGAAAGAAAAAAAATCAAACTAAAAAACTTTTATCATGCCAATTGAATAAA
GTTATAAATGTACCAGAGCCCACCTTATCTGCAGGTACTTTTTCTTGGTAGCAATCAATCAAAC
TTGAGTTGGAATCTGCAGAAACCCATCTCCCTTTATTGTCTCTATATGCAGTATATTCAACCTG
TTATGATATTACCTGTTAGGAACACATGCACAAGATAGTAACGAACATGGGCAACTTTTGGAGG
TAATTAGTTTCACCTACTTCTCCTAGAATCAATCCTTGATTTATCAGGCACTTGAAGGGCTCTT
TAGTGGAAACTACGCCAATATCATAAAGAACCTAACATAGAAATCAGTTAGTTTGAAGATAAGG
AATGCCAAAAGGAACCAGTAGATTTGCATGCTACAGAGTACAGAAATAAAAACAAATTAATGGC
ATAAGCTGGGAGGAAAAACAAATGCAAATAAGTTTACTCAAAAGAAAAAAAAACAATGCAAACG
AGAAAGTAACCGCCTGTACCCGGATTTCTTAAGAATAAGTCAGTCCCCTCGGGAAAAAAATCAT
ATTAAAGCAGCAAAATCTAATACAATTGAACAAACAGACACGATCAACAAGATAAACTAAATGG
TTTGTATATATTTGCACGTCAAAAACTTGCTAGTAGCATCCGATAGAATTATCAAAGAGCAGAT
ATTTGTCCATGGAAAAAGAGAAGTCAGAACCTTATGCCAAAATCTTGCATAAAGCAAATGCAAG
ACAGAATGTTCAGCACCACCAACATAGATGTCAACTGGGCCCCAATAACTGCATGATGCCAAAA
AAAGGGAAAAGAATAAGTAACAGAATACATGATATCCCTTACTGAGGTCATATGAAAGAAGGAG
CACCTCTCTTTTGCCTTGTCAACCAACATACTGGCATTTTGAGGATCCATAAATCTCAAATAAT
ACCTGAAAACATTGAAATGTTAGGGTTTAGAAGCCACTTGTAAATTTAAGAGCATATTTCAACA
TGGCAATAAAGATTTTCGAGTGCGATAGCGTTAGCAATTGATATATCTATAACTAATATAAATA
TTCGTATTTTTCCGGTCGTCACATCTAATTTTCGTCCGTTTTTCGTCCATACACAATCCGATTC
GGTTAGCAATAGCCATGGAAAAAAAATTGCAAAAAAAAAAAAAAAAATCGGCGGCCGCCGACGC
CTCCACCGCCGCCGGAGGGAGAAGAGAGGCGGCGGAGGGAGCGCCGCTGCCAGATCCGCCCGCG
GTGGCCGCCACCGCCGACGGATCCACCCTCGGACGAAGCCAACGCCATCGACGCCGCCGTTGAG
AGGGCGCCGTCGAGGCCGACGGGGAGAGGGAGAGGGGGAGGGAGGGACG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021