Detail information of Os03g0626600_circ_g.4


General Information
CircRNA Name Os03g0626600_circ_g.4
ID in PlantcircBase osa_circ_020695
Alias Os03circ20635
Organism Oryza sativa
Position chr3: 23857813-23860857  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os03g0626600
Parent gene annotation Zinc finger, LIM-type domain containing protein. (Os03t0626600-0
1)
Parent gene strand +
Alternative splicing Os03g0626600_circ_g.2 Os03g0626600_circ_g.3 Os03g0626600_circ_g.5 Os03g0626600_circ_g.6 Os03g0626600_circ_g.7 Os03g0626600_circ_g.8
Support reads 4/1
Tissues leaf and panicle/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0626600-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGGACCAGGAAACAAGATTGTAGACATGATTACAGGACCATACAAACTGGTTAGACGCTGTGA
AGTGACTGCAATTCTTATCCTATATGGCCTTCCAAGatgaggtagatattgatcatcgtttaca
tgaagatgaacaacttgcacgggctctacaagagagtctgaatgatgaacctcctcgtcagaat
gttccagt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 889
Transcript exons: 23857813-23857984,23859489-23859609,23859688-23859771,23
859864-23859983,23860294-23860506,23860587-23860646,2386
0739-23860857
ATGAGGTAGATATTGATCATCGTTTACATGAAGATGAACAACTTGCACGGGCTCTACAAGAGAG
TCTGAATGATGAACCTCCTCGTCAGAATGTTCCAGTAAAAGATGTTCACTCAGAGAGTACTCCA
GCAACTTTCATGCCCCCATATATATTCCCTTCAACTGGATTAAGGGTTTGTGCTGGATGTAAAA
CTCCAATCGGTCAAGGACGGTTTCTTAGTTGCATGGATTCTGTTTGGCACCCCCAGTGCTTCAG
GTGTTTTGCTTGTGATAGGCCAATATCAGAATATGAGTTTGCAGTTCATGAAGGTAACCCATAC
CATCGATCCTGCTATAAGGAGCTTTTCCATCCAAAATGTGATGTCTGCAAGAACTTTATTCCAA
CAAACAAAGATGGCCACATTGAATATCGGGCCCATCCTTTCTGGATGCAGAAGTATTGTCCTGC
CCATGAAACTGATCGTACTCCTAGGTGCTGCAGTTGTGAACGAATGGAGCCAAAGGATAGTAAG
TACATAACATTAGATGATGGCCGGAAACTCTGTTTGGAATGCCTGAATACTTCAATAATGGACA
CAGACGAATGCCAACCACTATATATTGATATTCAAGAATTCTATGAGGGTTTGAACATGAAAGT
GGAACAACAAATTCCCTTGCTGTTGGTTGAGCGACAAGCTTTAAATGAAGCCATGGAGGCCGAG
AAAACTGGACATCACCTTGCTGAAACCAGAGGTCTCTGCCTATCTGAAGAGCAAATTGTCCGAA
CTATACTAAGAAGACCAGTAATTGGACCAGGAAACAAGATTGTAGACATGATTACAGGACCATA
CAAACTGGTTAGACGCTGTGAAGTGACTGCAATTCTTATCCTATATGGCCTTCCAAG

Genomic sequence ATGAGGTAGATATTGATCATCGTTTACATGAAGATGAACAACTTGCACGGGCTCTACAAGAGAG
TCTGAATGATGAACCTCCTCGTCAGAATGTTCCAGTAAAAGATGTTCACTCAGAGAGTACTCCA
GCAACTTTCATGCCCCCATATATATTCCCTTCAACTGGATTAAGGTATTTGTTATAATAGCACA
TTATCATGCTGGCCTCTCCTTCCAATTTAATAAACCTTTATATGCCAATTCAGAAGAAGGCCTC
TTTTTTTTTTTTTTTTAACAGACACTAGTCAGTTAAATGTGCATTGCATGCCACGTTAATGAGA
TTATGAGAGGTAGTAAAAGAAAGTTTGGTACAGAACATGTGGTATTTTTTTTATTGTGGAGCTA
ACTGTACAGTCAGTCAGTGTCATATGTGTTAAACTTCGATCTGTTGCTATATTCTGGTAATCGC
TCAAAAGAAAAAAAAGAACAAGATGGCAAAATTATTTGCGGGTTTGAATGTTTGATCCAGTATA
TTAACTTGGGAGAGGAAGTATACAGTAAGATTGACGGTTTCACTGCATGAGATGAGGTCTGTAG
GTAGCAAGTCTGTGGGCTGTGAACAAATCCTACATTATATTAAAACAGCAGCAAGTGCTTTTCT
AGATATTGGCTGCCAGGATTGATTAAACAAGGCCCGAACTCTCGTAGCATCAGAAGATTGCTAT
GTCTGCTTCTCTATTTAGCTGTACCACTACTCCAAATGTAGCATTCCTTATCTTTTGTTCTTTT
CCAGTACCACATTACTTCCCTTGAGTAATTTGTCCCTGGCACCTGAGCCCACTCTCTACCAAGA
TGCACAATAAAATAAAATATCAATATGTAGGGCCTGTTTGGTACAGCTCCAACTCCTAAATTTA
ACTCCAGGAGTTGAGTCTGGAGTGGAGTTGTGGAGCTGCCTAAACCCAGCTCCACAACTCTAGT
ACATTTTGTGAGAGAGCTCCACCCAACTCCACTCCCAGTTTTAGTGGAGCTGAAACTGTTTGGC
TGAGCTCCAGCTCCACCCCTCCTGGAGCTGGAGCTGGAGTTGTGCCAAACAGGCCCGTAGTCCC
TCATACAGAAGAACACTCGAGCAAGCGCATCGGTATATATATTTTCACATCCTTGAAAAAGTGA
TGTGGCTGAAAGCTTATCAGTGTTTCCGATATGTCTTTTTTTGCATATGTAGAAGATCATTGTG
TGAGAGCCAACATTTGGTTGGGGTGATGAGCAGGGTTCACAATTTTGGTACGCAAAAACATTTT
CAGTGGGCGCGAGGGGCTGAAATTTGGAAATTTTGAGTTAGCAATCTAGAATTTTGAACAATTT
CTTGCTGAATATGATCGATTGTTTTTTCTAAATTCCCAACAAAATTCGAAATTCTCGACCGGAA
AAATGTCCTACTGGAAGACCTGCTAGTAGACCTGAAATTCAAAAATTACGTTGTGGAATTGTGA
ACCCAAATTATTAGCACTGAATATATGTACTATCTTATAATCATCTTGATTGGGTAGGGTATGG
GTATGAAAATTATAAACGCATTCATAGTTTTAACTGGTATCTTCTTCATGTCTGTTCTACTTGG
GTTCTCACCCTGTTCTAGTGCATGCGGTGGAACCCTTAGGGTTCTCTGATTCTCATGTACCACA
TTGACGGTGTAGGGTTTGTGCTGGATGTAAAACTCCAATCGGTCAAGGACGGTTTCTTAGTTGC
ATGGATTCTGTTTGGCACCCCCAGTGCTTCAGGTGTTTTGCTTGTGATAGGCCAATATCAGAAT
ATGAGGTAAAGAGACCTAGCATATTTCAACATAACATGCTTTAAGTAAATGAGATAACTGACAT
TATCCATTCATTTGGGAAGTTTGCAGTTCATGAAGGTAACCCATACCATCGATCCTGCTATAAG
GAGCTTTTCCATCCAAAATGTGATGTCTGCAAGAACTTTGTAAGAATTCATGTTGGATGAGCAT
GAGAATTTAGTAATAGCTACTTTTTAACTTTATCTGTTGAGTTGTGCTAATGACATTTGATGAT
CAGATTCCAACAAACAAAGATGGCCACATTGAATATCGGGCCCATCCTTTCTGGATGCAGAAGT
ATTGTCCTGCCCATGAAACTGATCGTACTCCTAGGTGCTGCAGTTGTGAACGAATGGAGGTTTG
TGCTATCCTATAAAAAAGTTATACATGTAGTGATTCAAATGGAAGTGTCAGGATGTAACTAACA
CTTCGGCATGTTCCCTCAACAAAAAAAATAGAAGTTTGGCATGTAGCTTCTGTTACCACCCTTA
CAAATTTTTTTTCGAAATCACCCTTACAATTTAAATGTGTTTGTTTTCAATATGTGCCTATGCA
CATGCATTTGATGATTTCATAGCAATGTCCATTCGTAGTGAAAACGTATTTTAATTATGAATTG
GTGAATCTAATGACTTCCCTTCTTTTCTTTTGTTTAATCTCAATGCTAGCCAAAGGATAGTAAG
TACATAACATTAGATGATGGCCGGAAACTCTGTTTGGAATGCCTGAATACTTCAATAATGGACA
CAGACGAATGCCAACCACTATATATTGATATTCAAGAATTCTATGAGGGTTTGAACATGAAAGT
GGAACAACAAATTCCCTTGCTGTTGGTTGAGCGACAAGCTTTAAATGAAGCCATGGAGGCCGAG
AAAACTGTAAGTGAAATGATCATTTTATAATATTCTAACAGTAATGTACATTATTTAACTTATT
GTTCCTTTGACCTCCTTAATAGGGACATCACCTTGCTGAAACCAGAGGTCTCTGCCTATCTGAA
GAGCAAATTGTCCGAACTGTACGTTCTTAAAAATAATGCCTTGCTTTAGTTATCTATTGAATAT
GTGAACTTGATACCTGGCTTATGGCTAAATAACATAATATATGCAGATACTAAGAAGACCAGTA
ATTGGACCAGGAAACAAGATTGTAGACATGATTACAGGACCATACAAACTGGTTAGACGCTGTG
AAGTGACTGCAATTCTTATCCTATATGGCCTTCCAAG
Conservation Information
Conserved circRNAs osi_circ_004968* osi_circ_013337
PMCS 0.3288387
Functional Information
Coding potential Y
Potential coding position 23860846-23857813(+)
23857951-23857813(+)
Potential amino acid sequence MAFQDEVDIDHRLHEDEQLARALQESLNDEPPRQNVPVKDVHSESTPATFMPPYIFPSTGLRVC
AGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEFAVHEGNPYHRSCYKELFHPKCDVCK
NFIPTNKDGHIEYRAHPFWMQKYCPAHETDRTPRCCSCERMEPKDSKYITLDDGRKLCLECLNT
SIMDTDECQPLYIDIQEFYEGLNMKVEQQIPLLLVERQALNEAMEAEKTGHHLAETRGLCLSEE
QIVRTILRRPVIGPGNKIVDMITGPYKLVRRCEVTAILILYGLPR*(+)
MPPYIFPSTGLRVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEFAVHEGNPYHRS
CYKELFHPKCDVCKNFIPTNKDGHIEYRAHPFWMQKYCPAHETDRTPRCCSCERMEPKDSKYIT
LDDGRKLCLECLNTSIMDTDECQPLYIDIQEFYEGLNMKVEQQIPLLLVERQALNEAMEAEKTG
HHLAETRGLCLSEEQIVRTILRRPVIGPGNKIVDMITGPYKLVRRCEVTAILILYGLPR*(+)
Sponge-miRNAs osa-miR396c-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017