Plant Circular RNA Database

Detail information of Os07g0409900_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os07g0409900_circ_g.5
					
						ID in PlantcircBase
						osa_circ_033486
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 12800002-12802245  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0409900						
					
						Parent gene annotation
						
							Plasma membrane-associated calcium-dependent protein kinase, Dir
ect phosphorylation and activation of MAPK, Negative reguration 
of rice immunity (Os07t0409900-01);Similar to Calcium-dependent 
protein kinase. (Os07t0409900-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0409900_circ_g.1 Os07g0409900_circ_g.2 Os07g0409900_circ_g.3 Os07g0409900_circ_g.4 Os07g0409900_circ_g.6 Os07g0409900_circ_g.7 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0409900-01:5
Os07t0409900-02:4

General Information
CircRNA Name	Os07g0409900_circ_g.5
ID in PlantcircBase	osa_circ_033486
Alias	NA
Organism	Oryza sativa
Position	chr7: 12800002-12802245 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0409900
Parent gene annotation	Plasma membrane-associated calcium-dependent protein kinase, Dir ect phosphorylation and activation of MAPK, Negative reguration of rice immunity (Os07t0409900-01);Similar to Calcium-dependent protein kinase. (Os07t0409900-02)
Parent gene strand	-
Alternative splicing	Os07g0409900_circ_g.1 Os07g0409900_circ_g.2 Os07g0409900_circ_g.3 Os07g0409900_circ_g.4 Os07g0409900_circ_g.6 Os07g0409900_circ_g.7
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0409900-01:5 Os07t0409900-02:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAAATGCATTGTAAAAATGTACAACATTTTCATGGCCTTGTAAGGCCTTCAGTATTTTAACTTC
TCGCTTTACGTCTTCAACGGCAACAGGAAGAACCATctctttaaatattccatcttcagttttg
tcccagaaaggtcgtcttccacacagtagaatataggttattacgccaatactccaaacgtcag
attctggg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCTTTAAATATTCCATCTTCAGTTTTGTCCCAGAAAGGTCGTCTTCCACACAGTAGAATATAG
GTTATTACGCCAATACTCCAAACGTCAGATTCTGGGCCTGACTTACGCTTAAGCACTTCTGGTG
CTACATAGTAGGCACTTCCAACAATGTCACGAAAGTGTTTCCCTGTGAGTGCGGCAACTTAATT
TCAATTACACTGAGAATAATTTCTTTATTGAGAAAATTCTTTATATTTGCCCTCAAAAGTTAGT
CGTATCCTTCATTTGCCCATGCGGAACTGCTCAACCCCTCATGCCCATCTTTCTCAACTTTGTT
TCTATATTTGCCCCTCGTATTACTTCTCCATTAGTTTGCTACTTGAATTATGTGTGAAGTACTT
TTTTACCTTCTAATGCCTTCTCAACTGGAAGCAAGGACAATTATCTCTTCTTTTTTAGTCTTCC
TATTTCTAATGTTGTCATTAATAAAAAAAACCAATATCTTTTTAACATGTAGAGAGTATAACTT
TAGCATGTTAGTTTTTTTATAAATGCATAGTAAAATAGCTGTTTTTCTTTTTAATTGGCTCGGG
CCTAAATACCTTTTTCTATGTCTGCTACTAAAATTTGTAAATAGTTTTGTCATTTTCTATGCCT
GCAGACTTGGTTCTCTAAAAAGAATGTATGTTCTAATAAAAGATGGCGATCAAGTTTTACTACT
ACTTATAATTATCAACATTTTTTTATGCACATGGATCGGTGAATGCCCTTTTTACATTGACAAG
GAATTAGAAGGGATTAACATAGAAAATATAATAAGCCATACCTCTAATAGAATAGGAATTACTA
GAAGGGTAAAAAGGTTTAGTTTCGGGAGAGCAAATAAGGGATATGGCTAACTTACAAGGCCAAA
TAGAGATTTTTCTCTTTTATATTTCATATGGAATGGAAGAAAGTTAAACAAGAAAACAATAGAA
CAAGTAGTTACAACATACACACAAACCTGGTCTTATAAAATCTGAAAGACCAAAATCTGTAGCC
TTGAGGGATGAGTCCTCTTTGGTTGATTTGAAGAGGAAGTTCTGTAAATACACATATCAAATGA
TCAATTACTCTTATAAGAAGACTTAGTCTTGTACTTTTAGAGCATACCTCAGGCTTCATGTCCC
GATGAACCAAACCATGCAAATGGCACTCAGCAGCAACCTTGAGCATTTGCCGCACAACTACTGC
AGCATCTTTCTCGCTATAACGGCTATCTTTCCTGTAAGAGCAGAACAAATGTGATATCAGTGAA
TTTGCTTTCTACATACATCAAATATTCAAACGAACTTAATAATAAATAAAAATCTTTGAACATT
CAGTCGAAAAAAAATCTTTGAACAATTCCTGACAGTTGATGGCTAGTGGATGTCTCACATAAAC
TTATGTCAATCCCTGTAATATTTTGGTTTTATGGTAATAGGAAAACAATATATGACTATATGCC
ATACATCCATATTAAATTCCAAGCTCTTTGTGGCACGAAGCACTAATTGAAATGCTCTCCGGTT
CAACATCCCTATATTTAGAATAAGTAATCCCAACACAACCAAAAAAGCATGCCACAGTTCTGTG
GTAAAGTAAAAATTTTTGACAAACTTCAAAAATTGACTTACTTGGCTAGTATCCGGTCAAGTAA
CTCCCCGCCTTCACATAATCTGTCAAATACATGTAACAGGGTCAGATCTTCATTAGCTTGCACA
GTTCCTTGATACAAAGAGAACAAAGATGAGAAACATGAAAGTGTTTGCCAACTATTTATCCTGA
ACTTGATATTTACCCGGTACAATTTCTAGATTTTTACGAGGGTATTAATATTATGCCAGTTTGC
ATGTGGTGTTTCTTTTCCATGTAATTAGATCCTGAATTGCCAAAGTCCTGTTTGGAGGGGCACA
AACTAAAATACTAGACCTCAGTAAGATCAATTACTTAAAATATGGGTGGTTTCTAAAAAAAAGC
ATAAACACACATATGAACCTTCCTTCAACTTGGCTAAGGCCATGAAAAGTTCACTTAGACATTT
TATGGTTATACTTAGATATACTTCTACTGATTTCATAAACATTTGAGAGTTTTTCCATGACTTA
CTCCATAACAATATACACATAATTATCATCTTCAAATGCATTGTAAAAATGTACAACATTTTCA
TGGCCTTGTAAGGCCTTCAGTATTTTAACTTCTCGCTTTACGTCTTCAACGGCAACAGGAAGAA
CCAT
						
					

			
		

Sequences
Splice junction sequence	CAAATGCATTGTAAAAATGTACAACATTTTCATGGCCTTGTAAGGCCTTCAGTATTTTAACTTC TCGCTTTACGTCTTCAACGGCAACAGGAAGAACCATctctttaaatattccatcttcagttttg tcccagaaaggtcgtcttccacacagtagaatataggttattacgccaatactccaaacgtcag attctggg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCTTTAAATATTCCATCTTCAGTTTTGTCCCAGAAAGGTCGTCTTCCACACAGTAGAATATAG GTTATTACGCCAATACTCCAAACGTCAGATTCTGGGCCTGACTTACGCTTAAGCACTTCTGGTG CTACATAGTAGGCACTTCCAACAATGTCACGAAAGTGTTTCCCTGTGAGTGCGGCAACTTAATT TCAATTACACTGAGAATAATTTCTTTATTGAGAAAATTCTTTATATTTGCCCTCAAAAGTTAGT CGTATCCTTCATTTGCCCATGCGGAACTGCTCAACCCCTCATGCCCATCTTTCTCAACTTTGTT TCTATATTTGCCCCTCGTATTACTTCTCCATTAGTTTGCTACTTGAATTATGTGTGAAGTACTT TTTTACCTTCTAATGCCTTCTCAACTGGAAGCAAGGACAATTATCTCTTCTTTTTTAGTCTTCC TATTTCTAATGTTGTCATTAATAAAAAAAACCAATATCTTTTTAACATGTAGAGAGTATAACTT TAGCATGTTAGTTTTTTTATAAATGCATAGTAAAATAGCTGTTTTTCTTTTTAATTGGCTCGGG CCTAAATACCTTTTTCTATGTCTGCTACTAAAATTTGTAAATAGTTTTGTCATTTTCTATGCCT GCAGACTTGGTTCTCTAAAAAGAATGTATGTTCTAATAAAAGATGGCGATCAAGTTTTACTACT ACTTATAATTATCAACATTTTTTTATGCACATGGATCGGTGAATGCCCTTTTTACATTGACAAG GAATTAGAAGGGATTAACATAGAAAATATAATAAGCCATACCTCTAATAGAATAGGAATTACTA GAAGGGTAAAAAGGTTTAGTTTCGGGAGAGCAAATAAGGGATATGGCTAACTTACAAGGCCAAA TAGAGATTTTTCTCTTTTATATTTCATATGGAATGGAAGAAAGTTAAACAAGAAAACAATAGAA CAAGTAGTTACAACATACACACAAACCTGGTCTTATAAAATCTGAAAGACCAAAATCTGTAGCC TTGAGGGATGAGTCCTCTTTGGTTGATTTGAAGAGGAAGTTCTGTAAATACACATATCAAATGA TCAATTACTCTTATAAGAAGACTTAGTCTTGTACTTTTAGAGCATACCTCAGGCTTCATGTCCC GATGAACCAAACCATGCAAATGGCACTCAGCAGCAACCTTGAGCATTTGCCGCACAACTACTGC AGCATCTTTCTCGCTATAACGGCTATCTTTCCTGTAAGAGCAGAACAAATGTGATATCAGTGAA TTTGCTTTCTACATACATCAAATATTCAAACGAACTTAATAATAAATAAAAATCTTTGAACATT CAGTCGAAAAAAAATCTTTGAACAATTCCTGACAGTTGATGGCTAGTGGATGTCTCACATAAAC TTATGTCAATCCCTGTAATATTTTGGTTTTATGGTAATAGGAAAACAATATATGACTATATGCC ATACATCCATATTAAATTCCAAGCTCTTTGTGGCACGAAGCACTAATTGAAATGCTCTCCGGTT CAACATCCCTATATTTAGAATAAGTAATCCCAACACAACCAAAAAAGCATGCCACAGTTCTGTG GTAAAGTAAAAATTTTTGACAAACTTCAAAAATTGACTTACTTGGCTAGTATCCGGTCAAGTAA CTCCCCGCCTTCACATAATCTGTCAAATACATGTAACAGGGTCAGATCTTCATTAGCTTGCACA GTTCCTTGATACAAAGAGAACAAAGATGAGAAACATGAAAGTGTTTGCCAACTATTTATCCTGA ACTTGATATTTACCCGGTACAATTTCTAGATTTTTACGAGGGTATTAATATTATGCCAGTTTGC ATGTGGTGTTTCTTTTCCATGTAATTAGATCCTGAATTGCCAAAGTCCTGTTTGGAGGGGCACA AACTAAAATACTAGACCTCAGTAAGATCAATTACTTAAAATATGGGTGGTTTCTAAAAAAAAGC ATAAACACACATATGAACCTTCCTTCAACTTGGCTAAGGCCATGAAAAGTTCACTTAGACATTT TATGGTTATACTTAGATATACTTCTACTGATTTCATAAACATTTGAGAGTTTTTCCATGACTTA CTCCATAACAATATACACATAATTATCATCTTCAAATGCATTGTAAAAATGTACAACATTTTCA TGGCCTTGTAAGGCCTTCAGTATTTTAACTTCTCGCTTTACGTCTTCAACGGCAACAGGAAGAA CCAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.131364851

Conservation Information
Conserved circRNAs	NA
PMCS	0.131364851

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							12802247-12800004(-)
						
						Potential amino acid sequence
						
							MVLPVAVEDVKREVKILKALQGHENVVHFYNAFEDDNYVYIVMELCEGGELLDRILAKKDSRYS
EKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSSLKATDFGLSDFIRPGKHFRDI
VGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEMVLPVAVEDVKREV
KILKALQGHENVVHFYNAFEDDNYVYIVMELCEGGELLDRILAKKDSRYSEKDAAVVVRQMLKV
AAECHLHGLVHRDMKPENFLFKSTKEDSSLKATDFGLSDFIRPGKHFRDIVGSAYYVAPEVLKR
KSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEMVLPVAVEDVKREVKILKALQGHENVVH
FYNAFEDDNYVYIVMELCEGGELLDRILAKKDSRYSEKDAAVVVRQMLKVAAECHLHGLVHRDM
KPENFLFKSTKEDSSLKATDFGLSDFIRPGKHFRDIVGSAYYVAPEVLKRKSGPESDVWSIGVI
TYILLCGRRPFWDKTEDGIFKEMVLPVAVEDVKREVKILKALQGHENVVHFYNAFEDDNYVYIV
MELCEGGELLDRILAKKDSRYSEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDS
SLKATDFGLSDFIRPGKHFRDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDK
TEDGIFKE(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	12802247-12800004(-)
Potential amino acid sequence	MVLPVAVEDVKREVKILKALQGHENVVHFYNAFEDDNYVYIVMELCEGGELLDRILAKKDSRYS EKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSSLKATDFGLSDFIRPGKHFRDI VGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEMVLPVAVEDVKREV KILKALQGHENVVHFYNAFEDDNYVYIVMELCEGGELLDRILAKKDSRYSEKDAAVVVRQMLKV AAECHLHGLVHRDMKPENFLFKSTKEDSSLKATDFGLSDFIRPGKHFRDIVGSAYYVAPEVLKR KSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEMVLPVAVEDVKREVKILKALQGHENVVH FYNAFEDDNYVYIVMELCEGGELLDRILAKKDSRYSEKDAAVVVRQMLKVAAECHLHGLVHRDM KPENFLFKSTKEDSSLKATDFGLSDFIRPGKHFRDIVGSAYYVAPEVLKRKSGPESDVWSIGVI TYILLCGRRPFWDKTEDGIFKEMVLPVAVEDVKREVKILKALQGHENVVHFYNAFEDDNYVYIV MELCEGGELLDRILAKKDSRYSEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDS SLKATDFGLSDFIRPGKHFRDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDK TEDGIFKE(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0409900_circ_g.5

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