Detail information of 2_circ_ag.5


General Information
CircRNA Name 2_circ_ag.5
ID in PlantcircBase ath_circ_016109
Alias NA
Organism Arabidpsis thaliana
Position chr2: 13811426-13815979  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT2G32530_circ_g.1 2_circ_ag.2 2_circ_ag.3 2_circ_ag.4 2_circ_ag.6 2_circ_ag.7 2_circ_ag.8 2_circ_ag.9 2_circ_ag.10 2_circ_ag.11 AT2G32540_circ_g.1 2_circ_ag.2 AT2G32560_circ_g.1 AT2G32580_circ_g.1 AT2G32580_circ_g.2 AT2G32600_circ_g.1 AT2G32600_circ_g.2 AT2G32600_circ_g.3 2_circ_ag.4
Support reads 3
Tissues root, aerial, inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGGGAGACGAAAAAGAGGTCCCTCATGTTGTTTACATTTCAAGAGAGAAAAGACCAAATCAC
TTTCATCATTACAAAGCTGGAGCCATGAACTTTCTGgtaagagtgtcagggttgatgacaaatg
caccatacatgttgaacgtagactgtgacatgtatgctaatgaagcagatgtggtgcgccaagc
aatgtgta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAAGAGTGTCAGGGTTGATGACAAATGCACCATACATGTTGAACGTAGACTGTGACATGTATG
CTAATGAAGCAGATGTGGTGCGCCAAGCAATGTGTATATTTCTACAAAAATCAATGAATTCAAA
CCATTGTGCTTTTGTTCAATTCCCTCAAGAGTTCTATGATTCTAACGCCGACGAACTCACCGTC
TTACAATCAGTTAAATTTCTCTTACTCTTTATATTTTTTGATCAATTTAATGTTATTAATCGTT
ATGTACGTAATAGGTTGTTTTCTTTATGTTAAATTTAGTATTTGGGACGAGGAATTGCGGGAAT
CCAAGGACCTACATATGCAGGTTCAGGATGCTTCCACACTAGAAGAGTTATGTACGGTCTATCA
ATAGATGATTTAGAAGATGATGGAAGTCTTTCTTCACTTGCAACAAGTAAGTACTACAGGCGAA
AACAAAAATGCATATATCATTAAACCAATATTTTAGTATTGAAAATTCTATTTCTCTTTTTTTT
TTTTCAATTTATTCTAACACTTAAATCTATGTTCTGTTATTCTTCTAACATGCAATGTATAGTA
CTTTTGTGATTCATCGTTATATAATACGTTCAGTAATTTTATTATTCAAATAAATCATTTTAAT
GGTATTGTTGTTATTTCATTAAGGGAAGTATTTGGCTGAAGAGAATTTAGCTAGAGAATTTGGG
AACTCTAACGAGATGGTGACATCGGTGGTCGAGGCATTACAAAGAAAACCAAATCCGCAAAATA
CCCTTGCAAACTCCCTCGAAGCGGCTCAAGAAGTGGGACATTGTCATTTTGAGTACCAAACTAG
CTGGGGCAAAACTGTAATTAGATTTAAACTATATCACAGTAGACTATTAATCTAAACTCAAATT
TTCTTCTTATTCATAGTAATGTCATTTGTAATGCATAAAATCCTGCAGATTGGTTGGTTATACG
AATCAACAGCGGAAGATGCAAACACGAGTATCGGAATCCATTCGAGAGGGTGGACTAGCTCATA
TATATCTCCGAAACCACCAGCGTTTCTTGGGGCTATGCCACCGGGAGGTCCGGAAGCGATGCTC
CAGCAGCGGCGATGGGCCACAGGACTGCTCGAAGTCCTTTTCAACAAACAAAGTCCGTTGATCG
GAATGTTTTGTAGGAAAATAAGATTTCGACAAAGCTTGGCTTATTTATACATTTTCACTTGGGG
TCTAAGGTCAATCCCTGAGCTTATTTATTGTCTCTTGCCTGCTTATTGCCTACTCCACAACGCT
GCCTTATTTCCCAAGGTGACTCTCTCTTAGTTCTTTCTGTCTCTTCAACTTCAACAAATTACCG
AAACTCAATTTGGATTATGACATGGTGACTGAACTAGCACAACCACTAAATTCTTAATTTGTAT
CATTTTCTCATTAGTATAGTTTCTATTTATTTCATATAATTGATTAAAAGGGAAATGTCTAATG
TTTTATTTTGTTTGTGGCTCTAGGGAGTTTATTTAGGTATAGTCGTCACACTTGTGGGAATGCA
TTGTCTTTACTCTCTATGGGAATTTATGAGCCTTGGTTTCTCAGTACAATCGTGGTTTGCCTCC
CAATCATTTTGGAGGATAAAAACCACTTGCAGTTGGTTATTTAGCATCCCTGATATCATACTCA
AGCTACTTGGAATCTCGAAAACTGTTTTCATAGTCACTAAAAAGACTATGCCCAAGACAATGTC
AGGATCTGGATCCGAAAAATCTCAACGAGAAGTTGATTGTCCAAACCAAGATTCCGGTAAATTT
GAATTTGATGGCTCGCTTTATTTCTTGCCTGGCACATTTATCCTTTTAGTGAATCTAGCCGCTC
TAGCCGGTTGTTCGGTGGGTCTACAACGTCACAGAGGAGGTGGTTCGGGTTTAGCAGAAGCTTG
TGGATGTATTTTGGTGGTTATATTGTTTCTTCCATTTCTAAAGGGTATGTTTGAGAAGGGAAAA
TATGGTATCCCATGGTCTACTCTTTCTAAAGCTGCCTTTTTAGCAGTTTTATTTGTTGTTTTCT
CTGTGGGAAACTAGTATACTGATATGGCTTTAATTTGTAGCTAAAAACTGCTAATATGAAAATA
ATTATTCTCTAATATACCTCTGGCTAAATTTTAGTTTCTTTGATACAAAATAAATCTAGGACTA
TAAATTCGTAAATAGTTGATGTACATTCTGAAGTAGTGAGTAGCGTATTACTTCCAAAACAACT
GCATCGCCTCTTCTACGGCTTTGTCTCGTTCTCACAATTATTAGCTTATATCCATATAAGACAC
TATTTATTTGACTGATCAAAAAAAAAATACACTATTTATCTTTGTGGGTTTTAAAACTATGACA
GGACCTGATTGATTTTGTTTTTGTAAGATTCGTGGTTTTTCGATTTCATGAAAATGACTCAATG
ATTTCATCCTTTCTACTTTTGGGGTTTGAAGTCAACTGTTTATGTGGACGTTATTTTTTTGAAA
ATTTAAGAGATAAAATAGGGCATACGAAGCCAATATCTAGATAAGTGATTTAGGAACAAAAACC
AATAACAAAATGAAGAAACATTACTTGACTTCATTTTGTGTGTGACGAGTGGCGACTAGTCATC
ATTCACCACAAAGCGCAAACTTGAATCAGGAGTAAGAAGACATACTTTATCGTTATCCTAATTT
GAATCGGACCACACAATAACCCACCACAAATAGACAAAGATACATATATTATTGACAATCTTTT
ATTATATAAGATAACGTTCTATATAATTGAATTGTTTTATTAATAACGAAAAAAAAACGACTTC
GATATGAGTAATTAATTCGTTGAAAAAAGTTTCTTCGGGTCTAGTTTTTTTAAACTTCTAATAT
GATATTAAAAACCAACATGATAGCTTTCACTTGATGGTAACTTAGGATCAGTATAGTGGTGGTA
TCTATCTACAAGTTTAATTCCAGTTTACGTGAAGTTCATAAATTTTATTGGTCATATCAATGTG
TACAATAAATATACGTTTTATAAATAAATAATATTTGCATTTTTTATTCATGTATCTAAATAAC
AAACTAGTCCAATTTCACTTGACTATGACCTCTTTGTTCTTTTTTTTGTTAATAGTTTTCACAA
AAAAAGCTTACTCAATTTTATATCTTCTCATCACTCCTTTTTATTATAAGTGTATACAAATTAT
ATATATATTTTTTACTTAATTCTTAGAAACATATCCAAAAACCTCAAGAAATCTCCTTCCATGG
CGGAATCAAGCTCTCCTCTCCCTCCTCTTTGTGAAAGGATCTCACACAAAAGCTATTTCTTAAG
AGCTGTGGATCTCACTATTCTAGGTCTTCTCCTTTCTCTTCTATTGTACCGTATCCTACATGTG
AACCAAAAGGACACCGTTTGGATCGTGGCTTTCCTCTGTGAAACTTGTTTCACCTTCGTATGGT
TGCTTATTACCAACATAAAATGGAGTCCTGCTGATTATAAAACATATCCTGAAAGACTTGATGA
AAGGTACCATTTTCCTATATATACACAAAAAGCAATATTCTTATCAAACTTGTATCAAGTCCTA
ATATATCATTTCATTTTAGTTGAGTAGAAAACATTCGAAACTAAAAATTTGAAATGACATAGCA
ACTTTTCATTTCAGGGTTCATGAACTTCCACCGGTAGATATGTTCGTGACCACAGCTGATCCAG
TAAGGGAGCCACCGCTTATCGTTGTAAACACAGTGCTTTCACTGTTAGCTGTGAATTATCCGGC
GAACAAACTAGCTTGTTATGTGTCGGACGATGGATGTTCACCTCTCACTTACTTCTCTCTCAAG
GAAGCTTCTAAGTTTGCCAAGATTTGGGTTCCTTTCTGCAAGAAATACAACGTTAGAGTTAGAG
CTCCTTTTATGTACTTCAGAAACTCTCCGGAAGCAGCAGAAGGTTCTGAATTCAGTAAAGACTG
GGAAATGACTAAGGTAAAGGGTTTGTTTGTCTTTTACAAATTCTTCAAACAATGTTTATCTATA
ATTTTTTTGAAAATTGTTGTGATTGATAAAAATATAAACAAGTTCTTCAGCCAATTAACACAAT
GACATTTGAATTTTAAAAAAACTGAAAAAAATCAAGATTCATTCATTTCTTTTCGTAATAATTA
TTGGGAATTTTCTTGAAATTGTGTTTTTGTATTAATATAAAGAGGGAGTACGAGAAGTTAAGCC
AGAAAGTAGAAGATGCCACTGGAAGTTCCCACTGGTTGGATGCAGAAGATGACTTTGAAGCTTT
CTTAAACACAAAATCAAATGATCATTCAACTATAGTTAAGGTAATTCTACAATTTTCCAGAGTA
AAATCAAATAATCACCACAAAACAAAAGAGTTAATTATAACAATTTCATTGAAATCTTGTTTTA
TGTGTTTATGTGAAGGTGGTATGGGAAAACAAGGGAGGTGTGGGAGACGAAAAAGAGGTCCCTC
ATGTTGTTTACATTTCAAGAGAGAAAAGACCAAATCACTTTCATCATTACAAAGCTGGAGCCAT
GAACTTTCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.596565327
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017