Detail information of BGIOSGA015229_circ_g.1


General Information
CircRNA Name BGIOSGA015229_circ_g.1
ID in PlantcircBase osi_circ_014273
Alias Chr04:18149638_18150498(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 15846555-15847415  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA015229
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015229_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TG-AC
Number of exons covered BGIOSGA015229-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATCAATTGCACCTTATTTATTTTTGCATACCTGATAGTTCATAAACGTTTCAATCAGTTCCA
CAGTCTGAAAAGATCCAAGCAAGCAAGATTGATACCctgtgaaacaggtgattcaggttccagc
tccgtcatgaaggcactgacaagtgcagagttggaaactttaatctatgagacaataagacagg
atacatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTGAAACAGGTGATTCAGGTTCCAGCTCCGTCATGAAGGCACTGACAAGTGCAGAGTTGGAA
ACTTTAATCTATGAGACAATAAGACAGGATACATCAGGACACAAAAATTGTACATATTGACATG
AAAGATAACTAAGTACATACCGGTATCTCCTCAAAAATATCAACCCATGACAATTTCTTCTCTC
TTAACCTGTAAAAACATGTAGTCATTTGCATATGCAATCTTTAAAAACTATTAGAAGGACTGGG
TTACATAAAAGAAACCGTACTTCTCTCCAGTTAAACCATTGTTACGGTAAAGATCCATGAATGA
ATCTGTGAGTTTCAAGGCCTTGAGAGCTAGAACCCCCTGATTTGACCTAGATGGGTCATAAACG
ATGCACACACATCTCCGGATATTCTCCTGTAACATGCAAATGTTATGTTCTGCATGCAACATCG
CAGAAAATTACGCAACTCTTATGACCAACTCATAGATATTTGATATATGATATGCATGTACTGC
TGCGTATACTACATTGGATGTACAAACAGGTTAGATATTGTAATGCATACAGAGACTTAACCTT
GATTCATGTCAAAATAGGTTACATGCTAATTAGAGAAGCTAATTAGGTGCACTGTTTGCTGTCC
TATTTGTTTGTTCATGCTGTGCTAGCTATTTTGAGCTAATTAATGCGCAAGTTGGCCTAAAACT
ATTACTGCAGTAGGTCAACAAAGCTGGGAGAGGATAACCCAACAGCAATGAAAAGATTGATCAA
TTGCACCTTATTTATTTTTGCATACCTGATAGTTCATAAACGTTTCAATCAGTTCCACAGTCTG
AAAAGATCCAAGCAAGCAAGATTGATACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021