Detail information of BGIOSGA015229_circ_g.2


General Information
CircRNA Name BGIOSGA015229_circ_g.2
ID in PlantcircBase osi_circ_014274
Alias Chr04:18148440_18149705(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 15847348-15848654  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA015229
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015229_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TG-AC
Number of exons covered BGIOSGA015229-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTTACTTCCAGAACACTGCCAACATCCAAACCAAGCAGTTGGCCTGTAACTAGAGCAGGTGCA
AACTCCTCACAGTGCTTAATGATCTTCAGGACAGCCctgatagttcataaacgtttcaatcagt
tccacagtctgaaaagatccaagcaagcaagattgatacctgtacacaggcatgggaaaaaaaa
gggtcaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATAGTTCATAAACGTTTCAATCAGTTCCACAGTCTGAAAAGATCCAAGCAAGCAAGATTGA
TACCTGTACACAGGCATGGGAAAAAAAAGGGTCAAAACATGAAGCAGAACAGGCTACAGCTTTG
TTGGATGATTATGATAGTTGTATGTGCAAAATCTGTTAAACAAGTACAACAAGAATGGAGGTTA
AAACTTAAAACCACAACATAAATAATACAAATAATAGGACACATCACTTAAGCTCAAGATGAAA
TACGTTGGATAATTAGTCATTATTGGAGTTAAAAATATAGCAAATATTTTGAACGAGGCATGAA
ACAGCTAGAATGCAACACAGGTTAATATGTCGTTAATGCAACTGCAAAAGACTGGAAAATACAT
CGAGTAAGCACAAAACCAGCCACTTTAAGGTCAATGTTACCCACATACACGATAACTAAAGGTT
GCTACCAGAAGCTTGATGATGTTTGGTTGCTTCATGCAATAAGAAATTTAACACTCTCATGAAG
TGTTTCCAAAAGAGGATTAGATAAAATAATCAGTCCAAGCAAACAAGCAGAGCACCATTGATTT
TAAACAGAGACAAGGTGAATACATGACACAAACAACATTTCTATACATGTATGCATAGAGGCAA
AATTCCACATTTATTTTGTTCTCACTTTTCAGTGTCACATACTCAACAGCATCACTAAACTATG
TTGACAAATGAGCATATCTCAATTTAGTTTGCCTGCATTATTAACTACAGCCAAAGATGTTAGC
AACATTCCAAAAATATAATAATGAACAAACGGTCAGAACAAAGAAATACGAATGAACTATTTAT
GCACATATAAATTAAAGGCAGAGGATCAAAGACTACAAAAACAGAGTTGTAACACGTGTAAACT
CAAAGGCTGCTCGCAGAAGCACATGGCAGAGGTTAATTATCATATGGAACAACAGCAATAGGTA
TTGAATGAAATGTCTTATCATACCATCCAACAGTGTTATTGTCAACATTAACCTCCCTCAAGCA
CCTCATCATCTCAAGCTGATAATTTGCACCATCTGCATCTGCCTCTTCATCATCTTCTCTCATC
TGTGGTCAAATATTAAAGTAGCTGTTAATCTATAAACTAAACAACCACAAGAATACTCAAGTCA
TATTAAAAGAAATATGTTATAGATGTTAAATACTCACTGGGAAAGGAAAACAGTTCGTTACTTC
CAGAACACTGCCAACATCCAAACCAAGCAGTTGGCCTGTAACTAGAGCAGGTGCAAACTCCTCA
CAGTGCTTAATGATCTTCAGGACAGCC
Conservation Information
Conserved circRNAs osa_circ_023551
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021