Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os06g0300800_circ_g.2 |
ID in PlantcircBase | osa_circ_030609 |
Alias | NA |
Organism | Oryza sativa |
Position | chr6: 11221455-11222672 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os06g0300800 |
Parent gene annotation |
Hypothetical conserved gene. (Os06t0300800-01);WD40 repeat-like domain containing protein. (Os06t0300800-02) |
Parent gene strand | + |
Alternative splicing | Os06g0300800_circ_g.1 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os06t0300800-01:4 Os06t0300800-02:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.160331917 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
11221468-11222669(+) 11221495-11222047(-) 11221470-11222614(-) |
Potential amino acid sequence |
MAFFAEDVHRLASASVDGRIYVWKIDEGPDEQNKPQITGKIEIAIQIVGDAETYHPRICWHSHK QEILFVGVANCVLKIDTTKVGRGMDFSREEPLKCPLDKLVDGVHLVGKHDADITDLSLSQWMTT RLASASKDGMVKIWDDRKSVPLSVLKPHDGQAVYSVSFLTAPEHPQHINLITARVTDMAFFAED VHRLASASVDGRIYVWKIDEGPDEQNKPQITGKIEIAIQIVGDAETYHPRICWHSHKQEILFVG VANCVLKIDTTKVGRGMDFSREEPLKCPLDKLVDGVHLVGKHDADITDLSLSQWMTTRLASASK DGMVKIWDDRKSVPLSVLKPHDGQAVYSVSFLTAPEHPQHINLITARVTDMAFFAEDVHRLASA SVDGRIYVWKIDEGPDEQNKPQITGKIEIAIQIVGDAETYHPRICWHSHKQEILFVGVANCVLK IDTTKVGRGMDFSREEPLKCPLDKLVDGVHLVGKHDADITDLSLSQWMTTRLASASKDGMVKIW DDRKSVPLSVLKPHDGQAVYSVSFLTAPEHPQHINLITARVTDMAFFAEDVHRLASASVDGRIY VWKIDEGPDEQNKPQITGKIEIAIQIVGDAETYHPRICWHSHKQEILFVGVANCVLKIDTTKVG RGMDFSREEPLKCPLDKLVDGVHLVGKHDADITDLSLSQWMTTRLASASKDGMVKIWDDRKSVP LSVLKPHDGQAVYSVSFLTAPEHPQHINLITA(+) MDIFRKESHVRNPCCDEIYMLGMLRCRKERNRVNSLTIMWFQNRQRHRFAIIPDLYHAIF*(-) MSVTLAVMRFICWGCSGAVRKETE*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |