Detail information of Os06g0300800_circ_g.2


General Information
CircRNA Name Os06g0300800_circ_g.2
ID in PlantcircBase osa_circ_030609
Alias NA
Organism Oryza sativa
Position chr6: 11221455-11222672  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0300800
Parent gene annotation Hypothetical conserved gene. (Os06t0300800-01);WD40 repeat-like
domain containing protein. (Os06t0300800-02)
Parent gene strand +
Alternative splicing Os06g0300800_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0300800-01:4
Os06t0300800-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCTCTGTCTGTTCTGAAACCACATGATGGTCAAGCTGTTTACTCTGTTTCTTTCCTTACGGCA
CCTGAGCATCCCCAGCATATAAATCTCATCACAGCAagggttacggacatggctttctttgcgg
aagatgtccatcggttagcaaggtatgtgtagagaggatgacatttggttactgccacaatctc
tatttctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGGTTACGGACATGGCTTTCTTTGCGGAAGATGTCCATCGGTTAGCAAGGTATGTGTAGAGAG
GATGACATTTGGTTACTGCCACAATCTCTATTTCTCTCTCTCTGTGTGTGATTAATAACTTGTT
TGATTATTCTGCAGTGCAAGTGTAGATGGGCGGATCTATGTATGGAAGATTGACGAGGGACCTG
ATGAGCAGAATAAACCACAAATCACAGGAAAGATTGAAATTGCCATACAGATTGTAGGAGATGC
TGAAACTTACCATCCAAGAATATGTTGGCACTCCCATAAGCAAGTAAAGTCTCTTCTACATCAC
CAATGCTACACTAAATGTCTTTGACTGTCTTTTATGTTACTGATTTGTGTACATTTTGTCCTGT
AGGAGATTCTGTTTGTTGGAGTTGCTAACTGCGTCTTAAAAATAGACACAACAAAAGTAGGAAG
AGGAATGGACTTCAGTAGAGAAGAACCTCTTAAATGCCCACTCGACAAGCTGGTCGATGGCGTT
CACTTGGTTGGTAAACATGATGCAGATATTACAGATTTGTCCCTATCTCAATGGATGACTACTC
GTCTTGCTTCCGCATCAAAAGATGGCATGGTATGTAACGTTGCATTGTATTTTCTTGTTTCTTA
GAACTTATGCTTACTGATAAGCTATAAAATAAATAAATGGTCCCCAATAACCGAAGATCCAAGA
TGAAACTTTCTGATTACATTCTCTCTCATTCACATGTTAATTGGACATATTTTTGTTTCCACTT
TTGTTAGCTTTGAAAACATCATCAACTGCCATGTGATACCTTTTATATCCACTTTGACTGAGTA
ATCTATATGGAAGGTGCTTTCATGTCTCACCAAATCTGGTCAGCAACCTATGCTTGGTATTGGT
GTCAATGCTATGTTATTGGGTATAATATTTGCTTTCCTGATGTACCAATGCAAAATTTGCAGCT
TCTGGCATCTGTTTTCTCATTTGATGAGAATTGGTTTTCATGAGATACTTCCATTGTTGTTGGA
CCTATCAAAACATTATCTTGCATTTCTAGTTTCATTTTGTAATGTGTACTTTCTGTTTCCTACA
GGTAAAGATCTGGGATGATCGCAAATCTGTGCCTCTGTCTGTTCTGAAACCACATGATGGTCAA
GCTGTTTACTCTGTTTCTTTCCTTACGGCACCTGAGCATCCCCAGCATATAAATCTCATCACAG
CA
Conservation Information
Conserved circRNAs NA
PMCS 0.160331917
Functional Information
Coding potential Y
Potential coding position 11221468-11222669(+)
11221495-11222047(-)
11221470-11222614(-)
Potential amino acid sequence MAFFAEDVHRLASASVDGRIYVWKIDEGPDEQNKPQITGKIEIAIQIVGDAETYHPRICWHSHK
QEILFVGVANCVLKIDTTKVGRGMDFSREEPLKCPLDKLVDGVHLVGKHDADITDLSLSQWMTT
RLASASKDGMVKIWDDRKSVPLSVLKPHDGQAVYSVSFLTAPEHPQHINLITARVTDMAFFAED
VHRLASASVDGRIYVWKIDEGPDEQNKPQITGKIEIAIQIVGDAETYHPRICWHSHKQEILFVG
VANCVLKIDTTKVGRGMDFSREEPLKCPLDKLVDGVHLVGKHDADITDLSLSQWMTTRLASASK
DGMVKIWDDRKSVPLSVLKPHDGQAVYSVSFLTAPEHPQHINLITARVTDMAFFAEDVHRLASA
SVDGRIYVWKIDEGPDEQNKPQITGKIEIAIQIVGDAETYHPRICWHSHKQEILFVGVANCVLK
IDTTKVGRGMDFSREEPLKCPLDKLVDGVHLVGKHDADITDLSLSQWMTTRLASASKDGMVKIW
DDRKSVPLSVLKPHDGQAVYSVSFLTAPEHPQHINLITARVTDMAFFAEDVHRLASASVDGRIY
VWKIDEGPDEQNKPQITGKIEIAIQIVGDAETYHPRICWHSHKQEILFVGVANCVLKIDTTKVG
RGMDFSREEPLKCPLDKLVDGVHLVGKHDADITDLSLSQWMTTRLASASKDGMVKIWDDRKSVP
LSVLKPHDGQAVYSVSFLTAPEHPQHINLITA(+)
MDIFRKESHVRNPCCDEIYMLGMLRCRKERNRVNSLTIMWFQNRQRHRFAIIPDLYHAIF*(-)
MSVTLAVMRFICWGCSGAVRKETE*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017