Detail information of Os06g0300800_circ_g.1


General Information
CircRNA Name Os06g0300800_circ_g.1
ID in PlantcircBase osa_circ_042312
Alias NA
Organism Oryza sativa
Position chr6: 11220627-11221510  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRI-long
Parent gene Os06g0300800
Parent gene annotation Hypothetical conserved gene. (Os06t0300800-01);WD40 repeat-like
domain containing protein. (Os06t0300800-02)
Parent gene strand +
Alternative splicing Os06g0300800_circ_g.2
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0300800-01:2
Os06t0300800-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCTATATTTATGTTTTGAATTCTTTTTTGTGTTTGCTGTAGAGGGTTACGGACATGGCTTT
CTTTGCGGAAGATGTCCATCGGTTAGCAAGGTATGTgcgaggcgcagccgcctcagctggaggt
gacgcccatcaccaagtacacgtcggacccggggctggtgctcggcaggcagatcgccgtgaac
cggaccta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 241
Transcript exons: 11220627-11220811,11221455-11221510
GCGAGGCGCAGCCGCCTCAGCTGGAGGTGACGCCCATCACCAAGTACACGTCGGACCCGGGGCT
GGTGCTCGGCAGGCAGATCGCCGTGAACCGGACCTACATCGTGTATGGCCTCAAGCTCGGCAAC
ATCCGCGTGCTCAACATCAACACCGCGCTTCGCTCGCTCCTCCGCGGGCACACACAGAGGGTTA
CGGACATGGCTTTCTTTGCGGAAGATGTCCATCGGTTAGCAAGGTATGT

Genomic sequence GCGAGGCGCAGCCGCCTCAGCTGGAGGTGACGCCCATCACCAAGTACACGTCGGACCCGGGGCT
GGTGCTCGGCAGGCAGATCGCCGTGAACCGGACCTACATCGTGTATGGCCTCAAGCTCGGCAAC
ATCCGCGTGCTCAACATCAACACCGCGCTTCGCTCGCTCCTCCGCGGGCACACACAGGTAATGA
AATGTATGACAGCTATAGATATGTTATAGAGTACTTAGGAGCATTTGTTATTGTTTAGTGCACT
TTAAGTGTTCTTTTATCATCTCATGGTGCTAGTATCTCAAACGTGGATTACGGATTTCTTTTGT
TTAAGCATGAGCCATGCAAGCATTATACTATACGTATAGACAGTAGCGTGTGTTTGGTATGATC
TTCTTTGCTCTTTAGCAGCATGTGCCTCTATAATTTTTACTATGGAGGCATGTATTAGAGATTT
TAGGCTGAGGAATTGACTTTCATAGCACACAGTGAAACTCTGAATTCAGAATTTTCATTATCAA
ATTACTTAATATGCTTACTACATGCTGCAGAAATTCAAAGTGAAACTTGAAGTTGGCTGCAACT
AGAGCCTGAATGTTAATACCTAATCACATTTGCAGTGCACTAATTCTCCTTCCATATCCTGATG
GGGTGCTTTTTTTTAACATTTTGCCATATAAATTTCTACTACCTATGTGATGAAAATGATGTTT
TGATGTTATGCCAAATCTTTTAGTAGTTTGGCATTTTCTTATTTAATTAACACTCTTGATCTTA
GTTAGCAATGAAGTCCATTTCTATATTTATGTTTTGAATTCTTTTTTGTGTTTGCTGTAGAGGG
TTACGGACATGGCTTTCTTTGCGGAAGATGTCCATCGGTTAGCAAGGTATGT
Conservation Information
Conserved circRNAs NA
PMCS 0.151778243
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study