Detail information of BGIOSGA017006_circ_g.1


General Information
CircRNA Name BGIOSGA017006_circ_g.1
ID in PlantcircBase osi_circ_014712
Alias Chr04:30441855_30445323(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28512015-28515483  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA017006
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA017006-TA:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCATGCCGTGAAGTCATTATTGATGAGAGGGGAATCTATTTTGCTAACCTCATATACCAATTCA
GCTATAGATAATTTGCTTATGAAGTTGAAGGCTGAGggtaatggatattgaggagatggcctgg
gctccaagatatggtttgaaagggattattgatgcttctattagatcaagggtttcatgcaatg
gtagttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAATGGATATTGAGGAGATGGCCTGGGCTCCAAGATATGGTTTGAAAGGGATTATTGATGCT
TCTATTAGATCAAGGGTTTCATGCAATGGTAGTTCATACGACAGAGTAATGCCTCTGGAGTTCA
AAACTGGTAAAGGAACTAGTGGTCAGGTAAGCATATGCTCCTGGATAGTGGATCCACTTGAAGA
TATATTATATCTTTTTCTGGCATGAGATATTTTTGTCACCGGGGTTCTGGAAACTATTTATGTA
ATAAATTAGTGAAGTATTGCAACAACCAGGCTTCTTGAAAGATTGTGCTGATTCCATAATCCAT
ATTAATTCTTACAAGTAGTCATGCTCTCAATTTTTTAATCAAAACCTGACGAGTTCATTGAGTT
TTATATTGCACAGGCCAGAACTGTTGTTTTCTGTCTGTTTTCCATAATGTAATTACTGGTTGCT
TACTTGAATTAGATTCCCTGCTCTATTTTATCCAAAACTTTAAGCTTTAGTTACAATTGACTAG
AAACCTGTCAACCACCTAGTCATGTCCATTCTGTGGCAACAACCAATCAATAATAATGTCCTAC
AACAACTAATCGTATCTTAAAAAAACCCAATCATAGTTCACTACAAAATAATAATTAATCAATA
ATCCGGAGCCTCAGTTCCATTCTACTTTCACAAGGTCAACACCCTTCAGTAGTTTTGATAATTA
ATACATGTCACATGTAGCGGCATCCAAATATATATTTTGATACCTTTTTTGAAATGTGATTGTG
ACTATTAGTGTTATCTTTACTTTATGTCCATTTCTGAAAAGAATATTGTGTTATTTTTGTGGTG
TTTCACATACTGTGTAGCACTCTAGTGTCTCCTATTTACCTAACCATGTCTGAAAAAACAACAA
TTTAGTCCTTCAGAATAGATCCAGTTACTTCTCTATTGCCCTTCACAATGGTTTATATATTTCC
AGACAGCTGTGGAACACACTGCCCAAGTGATATTGTACACGCTATTGATGACGGAGAGGTATGA
TCTATCTATTTCTTCCACTGCAGGCTTTCCATATATATATATATTCCTTACCATGCTTTTCCAT
GTCTTCAGATACTTGAACAAGGATATTGACTTGGGTCTTCTGTATTATCTTCACACAGACCAAA
CATTGGTAATCTTCTAAAACGACACTCAACATAAATTCTGTACCCATCCTTATCCATTTCTTGT
TAATTTCTGAAGGGCATCAAAGTCAAGAGGTCTGATTTAATTGGATTAATAATGCGTCGGAACG
AGCTTGCCACTGAGATCCTGAAGGCATCGATTTCACAGAGTTTTCCCCCGATGATACAGGTGGA
ACTAAAAACTTGTACATAAGTAATTCATTTGTTAGAACTCAAACAAAATCTTTCTTTCAGAGTC
CATCTACATGTAATGGATGTCGACACCTGGTTTCATGCACCATATACCACAAGGTTCAATAACT
CTATTCTTTTTAATATAAATGTGTTTTTTGATACAGTCCTGTTGGTACAAATTTGTTCAATTAC
ATAATATATACATGTGAAAAAGCCATACTTATATTCTGATGCAACAGGCGCATGGAGGCAATGC
TGCAACTAGTGGGCTTGGTGATTTATTTGATAATCTCGTGAATCACTTGACAGTTGCACATCAT
ACCTTTCTTAAACACTGGGACAGATTGATCGATCTTGAAGCTAGAGTTTCTCAGGTATCTTTAG
CTTTTCTCACGTGCCGTGTATTTGATTTGTACTCTCTTGATCTCATCTCATGCAAAATTCAGGT
CAAGAAGAAGGAAATTTTCCAGCCACATCATTCAAATACTGGGAGCAGGCATTCTTCCCCATCT
TATTTTGTCCTTGATGTTACAAATGGACATTCAATAGATTCATCTGGAAAAAGCAAAAGATACA
TATATACTTTTCTGCGCCAGAAGTTGCAGCCTGAGACAGCTGATCAGCCAGGAGAACATGTTGA
AAGTGTAGATTTTAGCCTCAAATGCGGTGATTCTGTGGTAAACCTTGTACACTTTCTGTATTCA
ATATTCAGCAACATTACTATGTTAGCTATTTCAAGTTCCCAGCAACATTGATATTTTTATTGCA
TATATTTGGCACACCATATTGCAAATTTGTAATGTATGGCTCCATCTCATTTTGTTTGGAGTGT
AGGGTTCTTTCCGTTTGAACTGTTATGTGCTTAATGTTGGTAAGGAAGTAGAACTATAGGTTCA
TAGAATATGCTCAGTGCATATAAGGAGGTTAAATGGCAAATATAATACCAGTTGAAAACTTCTG
CAGCTACTGCTAACCGATCAATCAGCAACAGCCAGCTAACACTTTGGAGTATTGTAGCGTTATA
TTACTTTGTTTTTATCCTCCTGTTTTGTGATGTTTACTTTAGTGCTGTAGGCCTATGGCCACAA
AGGGGTCATTTTTTTATGCGTTATTACACATATAGTAGCTCACACCCCTTTGCTTCATGGATAC
TTAGCTATTATAGTGATGCATGCTGGTTTATTTTTCTCCATAATGAAGTGTGTCATGTTTTCTT
CTACTTTTCATTAGGTGCTTAGCACAAAATCTGGGCGAATAGCTGTTGCAAATGGATACATAAG
GGACCTCAGCCGTGCCCATATAACGGTATTACCTGACCTTGCGAACCTGCTTAGGCATCCATTT
CAATTTATTAGGTTGATTATTAATATTTCAACTGGAATTTTTGTAGGTTTCATTGCCACGACGT
CTGAGACTTCCAGGAAGTAATTCCTTGTTAGAGCAAGGAGATCTCCAATGTGAAGTTTGGCGTA
TAGATAAGGATGAGTCTGTTTCTTCATTTGCTACCATGAGGTTGGCCCTTGTTTTATTTTTTTT
GTTGAAGGTTCTGAATTAGTAATTTAGAAAAGTTCCTTCTTCCTAAATAAAGTTTGTATTTGAA
CTGTTGCCAGACTCAACCTTGTCCAACTATTTGCTGAGAATCCACAAAACTCTCACCTAAGGAA
GTTGATTGTTGACCTCGAGGTCTGTTCGTCCACTAGCCTATTCGTGCTATGTTTCTCCATACTG
TTTTTGTTGTCTGTAATTTCCTTATTTGGATGTTGATAGGCTCCCAGATTTGATAGTGGAGGAC
TCCTAAGTCAAGATCCGGCACTATCATATATACAATCATTGCCAAATTTGAACAATGACCAACA
GAGATCGCTGCATAAAGTAAATCTTTGGTCTTTAGTTCATTATTTTTTTTCTTCTGAAAATTCA
ATGTCACTATGTAAAGCGTACACTATGTTGCTTTCAGATTCTAGCAGCAAAAGATTATGCGCTT
ATCCTAGGAATGCCTGGAACAGGCAAAACATATACGATGGTGCATGCCGTGAAGTCATTATTGA
TGAGAGGGGAATCTATTTTGCTAACCTCATATACCAATTCAGCTATAGATAATTTGCTTATGAA
GTTGAAGGCTGAG
Conservation Information
Conserved circRNAs osa_circ_025015
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021