Plant Circular RNA Database

Detail information of Os04g0588200_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os04g0588200_circ_g.2
					
						ID in PlantcircBase
						osa_circ_025015
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr4: 29723235-29726699  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os04g0588200						
					
						Parent gene annotation
						
							Similar to emb2411 (embryo defective 2411); ATP binding / ATP-de
pendent DNA helicase/ DNA binding. (Os04t0588200-00)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os04g0588200_circ_g.1 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os04t0588200-00:11

General Information
CircRNA Name	Os04g0588200_circ_g.2
ID in PlantcircBase	osa_circ_025015
Alias	NA
Organism	Oryza sativa
Position	chr4: 29723235-29726699 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os04g0588200
Parent gene annotation	Similar to emb2411 (embryo defective 2411); ATP binding / ATP-de pendent DNA helicase/ DNA binding. (Os04t0588200-00)
Parent gene strand	+
Alternative splicing	Os04g0588200_circ_g.1
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os04t0588200-00:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCATGCCGTGAAGTCATTATTGATGAGAGGGGAATCTATTTTGCTAACCTCATATACCAATTCA
GCTATAGATAATTTGCTTATGAAGTTGAAGGCTGAGgtaatggatattgaggagatggcctggg
ctccaagatatggtttgaaagggattattgatgcttctattagatcaagggtttcatgcaatgg
tagttcat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1290
Transcript exons: 29723235-29723387,29724196-29724251,29724328-29724388,29
724460-29724570,29724814-29724948,29725021-29725251,2972
5805-29725879,29725965-29726086,29726185-29726257,297263
42-29726446,29726532-29726699
GTAATGGATATTGAGGAGATGGCCTGGGCTCCAAGATATGGTTTGAAAGGGATTATTGATGCTT
CTATTAGATCAAGGGTTTCATGCAATGGTAGTTCATACGACAGAGTAATGCCTCTGGAGTTCAA
AACTGGTAAAGGAACTAGTGGTCAGACAGCTGTGGAACACACTGCCCAAGTGATATTGTACACG
CTATTGATGACGGAGAGATACTTGAACAAGGATATTGACTTGGGTCTTCTGTATTATCTTCACA
CAGACCAAACATTGGGCATCAAAGTCAAGAGGTCTGATTTAATTGGATTAATAATGCGTCGGAA
TGAGCTTGCCACTGAGATCCTGAAGGCATCGATTTCACAGAGTTTTCCCCCGATGATACAGGCG
CATGGAGGCAATGCTGCAACTAGTGGGCTTGGTGATTTATTTGATAATCTCGTGAATCACTTGA
CAGTTGCACATCATACCTTTCTTAAACACTGGGACAGATTGATCGATCTTGAAGCTAGAGTTTC
TCAGGTCAAGAAGAAGGAAATTTTCCAGCCACATCATTCAAATACTGGGAGCAGGCATTCTTCC
CCATCTTATTTTGTCCTTGATGTTACAAATGGACATTCAATAGATTCATCTGGAAAAAGCAAAA
GATACATATATACTTTTCTGCGCCAGAAGTTGCAGCCTGAGACAGCTGATCAGCCAGGAGAACA
TGTTGAAAGTGTAGATTTTAGCCTCAAATGCGGTGATTCTGTGGTGCTTAGCACAAAATCTGGG
CGAATAGCTGTTGCAAATGGATACATAAGGGACCTCAGCCGTGCCCATATAACGGTTTCATTGC
CACGACGTCTGAGACTTCCAGGAAGTAATTCCTTGTTAGAGCAAGGAGATCTCCAATGTGAAGT
TTGGCGTATAGATAAGGATGAGTCTGTTTCTTCATTTGCTACCATGAGACTCAACCTTGTCCAA
CTATTTGCTGAGAATCCACAAAACTCTCACCTAAGGAAGTTGATTGTTGACCTCGAGGCTCCCA
GATTTGATAGTGGAGGACTCCTAAGTCAAGATCCGGCACTATCATATATACAATCATTGCCAAA
TTTGAACAATGACCAACAGAGATCGCTGCATAAAATTCTAGCAGCAAAAGATTATGCGCTTATC
CTAGGAATGCCTGGAACAGGCAAAACATATACGATGGTGCATGCCGTGAAGTCATTATTGATGA
GAGGGGAATCTATTTTGCTAACCTCATATACCAATTCAGCTATAGATAATTTGCTTATGAAGTT
GAAGGCTGAG
						
					

						Genomic sequence
						
							GTAATGGATATTGAGGAGATGGCCTGGGCTCCAAGATATGGTTTGAAAGGGATTATTGATGCTT
CTATTAGATCAAGGGTTTCATGCAATGGTAGTTCATACGACAGAGTAATGCCTCTGGAGTTCAA
AACTGGTAAAGGAACTAGTGGTCAGGTAAGCATATGCTCCTGGATAGTGGATCCACTTGAAGAT
ATATTATATCTTTTTCTGGCATGAGATATTTTTGTCACCGGGGTTCTGGAAACTATTTATGCAA
TAAATTAGTGAAGTATTGCAACAACCAGGCTTCTTGAAAGATTGTGCTGATTCCATAATCCATA
TTAATTCTTACAAGTAGTCATGCTCTCAATTTTTTAATCAAAACCTGACGAGTTCATTGAGGTT
TATATTGCACAGGCCAGAACTGTTGTTTTCTGTCTGTTTTCCATAATGTAATTACTGGTTGCTT
ACTTGAATTAGATTCCCTGCTCTATTTTATCCAAAACTTTAAGCTTTAGTTACAATTGACTAGA
AACCTGTCAACCACCTAGTCATGTCCATTCTGTGGCAACAACCAATCAATAATAATGTCCTACA
ACAACTAATCGTACCTTAAAAAAACCCAATCATAGTTCATTACAAAATAATAATTAATCAATAA
TCCGGAGCCTCAGTTCCATTCTACTTTCACAAGGTCAACATCCTTCAGTAGTTTTGATAATTAA
TACATGTCACATGTAGCGGCATCCAAATATATATTTTGATACCTTTTTTGAAATGTGATTGTGA
CTATTAGTGTTATCTTTACTTTATGTCCATTTCTGAAAAGAATATTGTGTTATTTTTGTGGTGT
TTCACATACTGTGTAGCACTCTAGTGTCTCCTATTTACCTAACCATGTCTGAAAAAACAACAAT
TTAGTCCTTCAGAATAGATCCAGTTACTTCTCTATTGCTCTTCACAATGGTTTATATATTTCCA
GACAGCTGTGGAACACACTGCCCAAGTGATATTGTACACGCTATTGATGACGGAGAGGTATGAT
CTATCTATTTCTTCCACTGCAGGCTTTCCATATATATATATTCCTTACCATGCTTTTCCATGTC
TTCAGATACTTGAACAAGGATATTGACTTGGGTCTTCTGTATTATCTTCACACAGACCAAACAT
TGGTAATCTTCTAAAACGACACTCAACATAAATTCTGTACCCATCCTTATCCATTTCTTGTTAA
TTTCTGAAGGGCATCAAAGTCAAGAGGTCTGATTTAATTGGATTAATAATGCGTCGGAATGAGC
TTGCCACTGAGATCCTGAAGGCATCGATTTCACAGAGTTTTCCCCCGATGATACAGGTGGAACT
AAAAACTTGTACATAAGTAATTCATTTGTTAGAACTCAAACAAAATCTTTCTTTCAGAGTCCAT
CTACATGTAATGGATGTCGACACCTGGTTTCATGCACCATATACCACAAGGTTCAATAACTCTA
TTCTTTTTAATATAAATGTGTTTTTTGATACAGTCCTGTTGGTACAAATTTGTTCAATTACATA
ATATATACATGTGAAAAGCCATACTTATATTCTGATGCAACAGGCGCATGGAGGCAATGCTGCA
ACTAGTGGGCTTGGTGATTTATTTGATAATCTCGTGAATCACTTGACAGTTGCACATCATACCT
TTCTTAAACACTGGGACAGATTGATCGATCTTGAAGCTAGAGTTTCTCAGGTATCTTTAGCTTT
TCTCACGTGCCGTGTATTTGATTTGTACTCTCTTGATCTCATCTCATGCAAAATTCAGGTCAAG
AAGAAGGAAATTTTCCAGCCACATCATTCAAATACTGGGAGCAGGCATTCTTCCCCATCTTATT
TTGTCCTTGATGTTACAAATGGACATTCAATAGATTCATCTGGAAAAAGCAAAAGATACATATA
TACTTTTCTGCGCCAGAAGTTGCAGCCTGAGACAGCTGATCAGCCAGGAGAACATGTTGAAAGT
GTAGATTTTAGCCTCAAATGCGGTGATTCTGTGGTAAACCTTGTACACTTTCTGTATTCAATAT
TCAGCAACATTACTATGTTAGCTATTTCAAGTTCCCAGCAACATTGATATTTTTATTGCATATA
TTTGGCACACCATATTGCAAATTTGTAATGTATGGCTCCATCTCATTTTGTTTGGAGTGTAGGG
TTCTTTCCGTTTGAACTGTTATGTGCTTAATGTTGGTAAGGAAGTAGAACTATAGGTTCATAGA
ATATGCTCAGTGCATATAAGGAGGTTAAATGGCAAATATAATACCAGTTGAAAACTTCTGCAGC
TACTGCTAACCGATCAATCAGCAACAGCCAGCTAACACTTTGGAGTATTGTAGCGTTATATTAC
TTTGTTTTTATCCTCCTGTTTTGTGATGTTTACTTTAGTGCTGTAGGCCTATGGCCACAAAGGG
GTCATTTTTTTATGCGTTATTACACATATAGTAGCTCACACCCCTTTGCTTCATGGATACTTAG
CTATTATAGTGATGCATGCTGGTTTATTTTTCTCCATAATGAAGTGTGTCATGTTTTCTTCTAC
TTTTCATTAGGTGCTTAGCACAAAATCTGGGCGAATAGCTGTTGCAAATGGATACATAAGGGAC
CTCAGCCGTGCCCATATAACGGTATTACCTGACCTTGCGAACCTGCTTAGGCATCCATTTCAAT
TTATTAGGTTGATTATTAATATTTCAACTGGAATTTTTGTAGGTTTCATTGCCACGACGTCTGA
GACTTCCAGGAAGTAATTCCTTGTTAGAGCAAGGAGATCTCCAATGTGAAGTTTGGCGTATAGA
TAAGGATGAGTCTGTTTCTTCATTTGCTACCATGAGGTTGGCCCTTGTTTTATTTTTTTTGTTG
AAGGTTCTGAATTAGTAATTTAGAAAAGTTCCTTCTTCCTAAATAAAGTTTGTATTTGAACTGT
TGCCAGACTCAACCTTGTCCAACTATTTGCTGAGAATCCACAAAACTCTCACCTAAGGAAGTTG
ATTGTTGACCTCGAGGTCTGTTCGTCCACTAGCCTATTCGTGCTATGTTTCTCCATACTGTTTT
TGTTGTCTGTAATTTCCTTATTTGGATGTTGATAGGCTCCCAGATTTGATAGTGGAGGACTCCT
AAGTCAAGATCCGGCACTATCATATATACAATCATTGCCAAATTTGAACAATGACCAACAGAGA
TCGCTGCATAAAGTAAATCTTTGGTCTTTAGTTCATTATTTTTTTTCTTCTGAAAATTCAATGT
CACTATGTAAAGCGTACACTATGTTGCTTTCAGATTCTAGCAGCAAAAGATTATGCGCTTATCC
TAGGAATGCCTGGAACAGGCAAAACATATACGATGGTGCATGCCGTGAAGTCATTATTGATGAG
AGGGGAATCTATTTTGCTAACCTCATATACCAATTCAGCTATAGATAATTTGCTTATGAAGTTG
AAGGCTGAG
						
					

			
		

Sequences
Splice junction sequence	GCATGCCGTGAAGTCATTATTGATGAGAGGGGAATCTATTTTGCTAACCTCATATACCAATTCA GCTATAGATAATTTGCTTATGAAGTTGAAGGCTGAGgtaatggatattgaggagatggcctggg ctccaagatatggtttgaaagggattattgatgcttctattagatcaagggtttcatgcaatgg tagttcat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1290 Transcript exons: 29723235-29723387,29724196-29724251,29724328-29724388,29 724460-29724570,29724814-29724948,29725021-29725251,2972 5805-29725879,29725965-29726086,29726185-29726257,297263 42-29726446,29726532-29726699 GTAATGGATATTGAGGAGATGGCCTGGGCTCCAAGATATGGTTTGAAAGGGATTATTGATGCTT CTATTAGATCAAGGGTTTCATGCAATGGTAGTTCATACGACAGAGTAATGCCTCTGGAGTTCAA AACTGGTAAAGGAACTAGTGGTCAGACAGCTGTGGAACACACTGCCCAAGTGATATTGTACACG CTATTGATGACGGAGAGATACTTGAACAAGGATATTGACTTGGGTCTTCTGTATTATCTTCACA CAGACCAAACATTGGGCATCAAAGTCAAGAGGTCTGATTTAATTGGATTAATAATGCGTCGGAA TGAGCTTGCCACTGAGATCCTGAAGGCATCGATTTCACAGAGTTTTCCCCCGATGATACAGGCG CATGGAGGCAATGCTGCAACTAGTGGGCTTGGTGATTTATTTGATAATCTCGTGAATCACTTGA CAGTTGCACATCATACCTTTCTTAAACACTGGGACAGATTGATCGATCTTGAAGCTAGAGTTTC TCAGGTCAAGAAGAAGGAAATTTTCCAGCCACATCATTCAAATACTGGGAGCAGGCATTCTTCC CCATCTTATTTTGTCCTTGATGTTACAAATGGACATTCAATAGATTCATCTGGAAAAAGCAAAA GATACATATATACTTTTCTGCGCCAGAAGTTGCAGCCTGAGACAGCTGATCAGCCAGGAGAACA TGTTGAAAGTGTAGATTTTAGCCTCAAATGCGGTGATTCTGTGGTGCTTAGCACAAAATCTGGG CGAATAGCTGTTGCAAATGGATACATAAGGGACCTCAGCCGTGCCCATATAACGGTTTCATTGC CACGACGTCTGAGACTTCCAGGAAGTAATTCCTTGTTAGAGCAAGGAGATCTCCAATGTGAAGT TTGGCGTATAGATAAGGATGAGTCTGTTTCTTCATTTGCTACCATGAGACTCAACCTTGTCCAA CTATTTGCTGAGAATCCACAAAACTCTCACCTAAGGAAGTTGATTGTTGACCTCGAGGCTCCCA GATTTGATAGTGGAGGACTCCTAAGTCAAGATCCGGCACTATCATATATACAATCATTGCCAAA TTTGAACAATGACCAACAGAGATCGCTGCATAAAATTCTAGCAGCAAAAGATTATGCGCTTATC CTAGGAATGCCTGGAACAGGCAAAACATATACGATGGTGCATGCCGTGAAGTCATTATTGATGA GAGGGGAATCTATTTTGCTAACCTCATATACCAATTCAGCTATAGATAATTTGCTTATGAAGTT GAAGGCTGAG
Genomic sequence	GTAATGGATATTGAGGAGATGGCCTGGGCTCCAAGATATGGTTTGAAAGGGATTATTGATGCTT CTATTAGATCAAGGGTTTCATGCAATGGTAGTTCATACGACAGAGTAATGCCTCTGGAGTTCAA AACTGGTAAAGGAACTAGTGGTCAGGTAAGCATATGCTCCTGGATAGTGGATCCACTTGAAGAT ATATTATATCTTTTTCTGGCATGAGATATTTTTGTCACCGGGGTTCTGGAAACTATTTATGCAA TAAATTAGTGAAGTATTGCAACAACCAGGCTTCTTGAAAGATTGTGCTGATTCCATAATCCATA TTAATTCTTACAAGTAGTCATGCTCTCAATTTTTTAATCAAAACCTGACGAGTTCATTGAGGTT TATATTGCACAGGCCAGAACTGTTGTTTTCTGTCTGTTTTCCATAATGTAATTACTGGTTGCTT ACTTGAATTAGATTCCCTGCTCTATTTTATCCAAAACTTTAAGCTTTAGTTACAATTGACTAGA AACCTGTCAACCACCTAGTCATGTCCATTCTGTGGCAACAACCAATCAATAATAATGTCCTACA ACAACTAATCGTACCTTAAAAAAACCCAATCATAGTTCATTACAAAATAATAATTAATCAATAA TCCGGAGCCTCAGTTCCATTCTACTTTCACAAGGTCAACATCCTTCAGTAGTTTTGATAATTAA TACATGTCACATGTAGCGGCATCCAAATATATATTTTGATACCTTTTTTGAAATGTGATTGTGA CTATTAGTGTTATCTTTACTTTATGTCCATTTCTGAAAAGAATATTGTGTTATTTTTGTGGTGT TTCACATACTGTGTAGCACTCTAGTGTCTCCTATTTACCTAACCATGTCTGAAAAAACAACAAT TTAGTCCTTCAGAATAGATCCAGTTACTTCTCTATTGCTCTTCACAATGGTTTATATATTTCCA GACAGCTGTGGAACACACTGCCCAAGTGATATTGTACACGCTATTGATGACGGAGAGGTATGAT CTATCTATTTCTTCCACTGCAGGCTTTCCATATATATATATTCCTTACCATGCTTTTCCATGTC TTCAGATACTTGAACAAGGATATTGACTTGGGTCTTCTGTATTATCTTCACACAGACCAAACAT TGGTAATCTTCTAAAACGACACTCAACATAAATTCTGTACCCATCCTTATCCATTTCTTGTTAA TTTCTGAAGGGCATCAAAGTCAAGAGGTCTGATTTAATTGGATTAATAATGCGTCGGAATGAGC TTGCCACTGAGATCCTGAAGGCATCGATTTCACAGAGTTTTCCCCCGATGATACAGGTGGAACT AAAAACTTGTACATAAGTAATTCATTTGTTAGAACTCAAACAAAATCTTTCTTTCAGAGTCCAT CTACATGTAATGGATGTCGACACCTGGTTTCATGCACCATATACCACAAGGTTCAATAACTCTA TTCTTTTTAATATAAATGTGTTTTTTGATACAGTCCTGTTGGTACAAATTTGTTCAATTACATA ATATATACATGTGAAAAGCCATACTTATATTCTGATGCAACAGGCGCATGGAGGCAATGCTGCA ACTAGTGGGCTTGGTGATTTATTTGATAATCTCGTGAATCACTTGACAGTTGCACATCATACCT TTCTTAAACACTGGGACAGATTGATCGATCTTGAAGCTAGAGTTTCTCAGGTATCTTTAGCTTT TCTCACGTGCCGTGTATTTGATTTGTACTCTCTTGATCTCATCTCATGCAAAATTCAGGTCAAG AAGAAGGAAATTTTCCAGCCACATCATTCAAATACTGGGAGCAGGCATTCTTCCCCATCTTATT TTGTCCTTGATGTTACAAATGGACATTCAATAGATTCATCTGGAAAAAGCAAAAGATACATATA TACTTTTCTGCGCCAGAAGTTGCAGCCTGAGACAGCTGATCAGCCAGGAGAACATGTTGAAAGT GTAGATTTTAGCCTCAAATGCGGTGATTCTGTGGTAAACCTTGTACACTTTCTGTATTCAATAT TCAGCAACATTACTATGTTAGCTATTTCAAGTTCCCAGCAACATTGATATTTTTATTGCATATA TTTGGCACACCATATTGCAAATTTGTAATGTATGGCTCCATCTCATTTTGTTTGGAGTGTAGGG TTCTTTCCGTTTGAACTGTTATGTGCTTAATGTTGGTAAGGAAGTAGAACTATAGGTTCATAGA ATATGCTCAGTGCATATAAGGAGGTTAAATGGCAAATATAATACCAGTTGAAAACTTCTGCAGC TACTGCTAACCGATCAATCAGCAACAGCCAGCTAACACTTTGGAGTATTGTAGCGTTATATTAC TTTGTTTTTATCCTCCTGTTTTGTGATGTTTACTTTAGTGCTGTAGGCCTATGGCCACAAAGGG GTCATTTTTTTATGCGTTATTACACATATAGTAGCTCACACCCCTTTGCTTCATGGATACTTAG CTATTATAGTGATGCATGCTGGTTTATTTTTCTCCATAATGAAGTGTGTCATGTTTTCTTCTAC TTTTCATTAGGTGCTTAGCACAAAATCTGGGCGAATAGCTGTTGCAAATGGATACATAAGGGAC CTCAGCCGTGCCCATATAACGGTATTACCTGACCTTGCGAACCTGCTTAGGCATCCATTTCAAT TTATTAGGTTGATTATTAATATTTCAACTGGAATTTTTGTAGGTTTCATTGCCACGACGTCTGA GACTTCCAGGAAGTAATTCCTTGTTAGAGCAAGGAGATCTCCAATGTGAAGTTTGGCGTATAGA TAAGGATGAGTCTGTTTCTTCATTTGCTACCATGAGGTTGGCCCTTGTTTTATTTTTTTTGTTG AAGGTTCTGAATTAGTAATTTAGAAAAGTTCCTTCTTCCTAAATAAAGTTTGTATTTGAACTGT TGCCAGACTCAACCTTGTCCAACTATTTGCTGAGAATCCACAAAACTCTCACCTAAGGAAGTTG ATTGTTGACCTCGAGGTCTGTTCGTCCACTAGCCTATTCGTGCTATGTTTCTCCATACTGTTTT TGTTGTCTGTAATTTCCTTATTTGGATGTTGATAGGCTCCCAGATTTGATAGTGGAGGACTCCT AAGTCAAGATCCGGCACTATCATATATACAATCATTGCCAAATTTGAACAATGACCAACAGAGA TCGCTGCATAAAGTAAATCTTTGGTCTTTAGTTCATTATTTTTTTTCTTCTGAAAATTCAATGT CACTATGTAAAGCGTACACTATGTTGCTTTCAGATTCTAGCAGCAAAAGATTATGCGCTTATCC TAGGAATGCCTGGAACAGGCAAAACATATACGATGGTGCATGCCGTGAAGTCATTATTGATGAG AGGGGAATCTATTTTGCTAACCTCATATACCAATTCAGCTATAGATAATTTGCTTATGAAGTTG AAGGCTGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_014712 						
					
						PMCS
						0.23452847

Conservation Information
Conserved circRNAs	osi_circ_014712
PMCS	0.23452847

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							29723239-29726696(+)
						
					

						Potential amino acid sequence
						
							MDIEEMAWAPRYGLKGIIDASIRSRVSCNGSSYDRVMPLEFKTGKGTSGQTAVEHTAQVILYTL
LMTERYLNKDIDLGLLYYLHTDQTLGIKVKRSDLIGLIMRRNELATEILKASISQSFPPMIQAH
GGNAATSGLGDLFDNLVNHLTVAHHTFLKHWDRLIDLEARVSQVKKKEIFQPHHSNTGSRHSSP
SYFVLDVTNGHSIDSSGKSKRYIYTFLRQKLQPETADQPGEHVESVDFSLKCGDSVVLSTKSGR
IAVANGYIRDLSRAHITVSLPRRLRLPGSNSLLEQGDLQCEVWRIDKDESVSSFATMRLNLVQL
FAENPQNSHLRKLIVDLEAPRFDSGGLLSQDPALSYIQSLPNLNNDQQRSLHKILAAKDYALIL
GMPGTGKTYTMVHAVKSLLMRGESILLTSYTNSAIDNLLMKLKAEVMDIEEMAWAPRYGLKGII
DASIRSRVSCNGSSYDRVMPLEFKTGKGTSGQTAVEHTAQVILYTLLMTERYLNKDIDLGLLYY
LHTDQTLGIKVKRSDLIGLIMRRNELATEILKASISQSFPPMIQAHGGNAATSGLGDLFDNLVN
HLTVAHHTFLKHWDRLIDLEARVSQVKKKEIFQPHHSNTGSRHSSPSYFVLDVTNGHSIDSSGK
SKRYIYTFLRQKLQPETADQPGEHVESVDFSLKCGDSVVLSTKSGRIAVANGYIRDLSRAHITV
SLPRRLRLPGSNSLLEQGDLQCEVWRIDKDESVSSFATMRLNLVQLFAENPQNSHLRKLIVDLE
APRFDSGGLLSQDPALSYIQSLPNLNNDQQRSLHKILAAKDYALILGMPGTGKTYTMVHAVKSL
LMRGESILLTSYTNSAIDNLLMKLKAEVMDIEEMAWAPRYGLKGIIDASIRSRVSCNGSSYDRV
MPLEFKTGKGTSGQTAVEHTAQVILYTLLMTERYLNKDIDLGLLYYLHTDQTLGIKVKRSDLIG
LIMRRNELATEILKASISQSFPPMIQAHGGNAATSGLGDLFDNLVNHLTVAHHTFLKHWDRLID
LEARVSQVKKKEIFQPHHSNTGSRHSSPSYFVLDVTNGHSIDSSGKSKRYIYTFLRQKLQPETA
DQPGEHVESVDFSLKCGDSVVLSTKSGRIAVANGYIRDLSRAHITVSLPRRLRLPGSNSLLEQG
DLQCEVWRIDKDESVSSFATMRLNLVQLFAENPQNSHLRKLIVDLEAPRFDSGGLLSQDPALSY
IQSLPNLNNDQQRSLHKILAAKDYALILGMPGTGKTYTMVHAVKSLLMRGESILLTSYTNSAID
NLLMKLKAEVMDIEEMAWAPRYGLKGIIDASIRSRVSCNGSSYDRVMPLEFKTGKGTSGQTAVE
HTAQVILYTLLMTERYLNKDIDLGLLYYLHTDQTLGIKVKRSDLIGLIMRRNELATEILKASIS
QSFPPMIQAHGGNAATSGLGDLFDNLVNHLTVAHHTFLKHWDRLIDLEARVSQVKKKEIFQPHH
SNTGSRHSSPSYFVLDVTNGHSIDSSGKSKRYIYTFLRQKLQPETADQPGEHVESVDFSLKCGD
SVVLSTKSGRIAVANGYIRDLSRAHITVSLPRRLRLPGSNSLLEQGDLQCEVWRIDKDESVSSF
ATMRLNLVQLFAENPQNSHLRKLIVDLEAPRFDSGGLLSQDPALSYIQSLPNLNNDQQRSLHKI
LAAKDYALILGMPGTGKTYTMVHAVKSLLMRGESILLTSYTNSAIDNLLMKLKAE(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	29723239-29726696(+)
Potential amino acid sequence	MDIEEMAWAPRYGLKGIIDASIRSRVSCNGSSYDRVMPLEFKTGKGTSGQTAVEHTAQVILYTL LMTERYLNKDIDLGLLYYLHTDQTLGIKVKRSDLIGLIMRRNELATEILKASISQSFPPMIQAH GGNAATSGLGDLFDNLVNHLTVAHHTFLKHWDRLIDLEARVSQVKKKEIFQPHHSNTGSRHSSP SYFVLDVTNGHSIDSSGKSKRYIYTFLRQKLQPETADQPGEHVESVDFSLKCGDSVVLSTKSGR IAVANGYIRDLSRAHITVSLPRRLRLPGSNSLLEQGDLQCEVWRIDKDESVSSFATMRLNLVQL FAENPQNSHLRKLIVDLEAPRFDSGGLLSQDPALSYIQSLPNLNNDQQRSLHKILAAKDYALIL GMPGTGKTYTMVHAVKSLLMRGESILLTSYTNSAIDNLLMKLKAEVMDIEEMAWAPRYGLKGII DASIRSRVSCNGSSYDRVMPLEFKTGKGTSGQTAVEHTAQVILYTLLMTERYLNKDIDLGLLYY LHTDQTLGIKVKRSDLIGLIMRRNELATEILKASISQSFPPMIQAHGGNAATSGLGDLFDNLVN HLTVAHHTFLKHWDRLIDLEARVSQVKKKEIFQPHHSNTGSRHSSPSYFVLDVTNGHSIDSSGK SKRYIYTFLRQKLQPETADQPGEHVESVDFSLKCGDSVVLSTKSGRIAVANGYIRDLSRAHITV SLPRRLRLPGSNSLLEQGDLQCEVWRIDKDESVSSFATMRLNLVQLFAENPQNSHLRKLIVDLE APRFDSGGLLSQDPALSYIQSLPNLNNDQQRSLHKILAAKDYALILGMPGTGKTYTMVHAVKSL LMRGESILLTSYTNSAIDNLLMKLKAEVMDIEEMAWAPRYGLKGIIDASIRSRVSCNGSSYDRV MPLEFKTGKGTSGQTAVEHTAQVILYTLLMTERYLNKDIDLGLLYYLHTDQTLGIKVKRSDLIG LIMRRNELATEILKASISQSFPPMIQAHGGNAATSGLGDLFDNLVNHLTVAHHTFLKHWDRLID LEARVSQVKKKEIFQPHHSNTGSRHSSPSYFVLDVTNGHSIDSSGKSKRYIYTFLRQKLQPETA DQPGEHVESVDFSLKCGDSVVLSTKSGRIAVANGYIRDLSRAHITVSLPRRLRLPGSNSLLEQG DLQCEVWRIDKDESVSSFATMRLNLVQLFAENPQNSHLRKLIVDLEAPRFDSGGLLSQDPALSY IQSLPNLNNDQQRSLHKILAAKDYALILGMPGTGKTYTMVHAVKSLLMRGESILLTSYTNSAID NLLMKLKAEVMDIEEMAWAPRYGLKGIIDASIRSRVSCNGSSYDRVMPLEFKTGKGTSGQTAVE HTAQVILYTLLMTERYLNKDIDLGLLYYLHTDQTLGIKVKRSDLIGLIMRRNELATEILKASIS QSFPPMIQAHGGNAATSGLGDLFDNLVNHLTVAHHTFLKHWDRLIDLEARVSQVKKKEIFQPHH SNTGSRHSSPSYFVLDVTNGHSIDSSGKSKRYIYTFLRQKLQPETADQPGEHVESVDFSLKCGD SVVLSTKSGRIAVANGYIRDLSRAHITVSLPRRLRLPGSNSLLEQGDLQCEVWRIDKDESVSSF ATMRLNLVQLFAENPQNSHLRKLIVDLEAPRFDSGGLLSQDPALSYIQSLPNLNNDQQRSLHKI LAAKDYALILGMPGTGKTYTMVHAVKSLLMRGESILLTSYTNSAIDNLLMKLKAE(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os04g0588200_circ_g.2

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