Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0588200_circ_g.2 |
ID in PlantcircBase | osa_circ_025015 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 29723235-29726699 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0588200 |
Parent gene annotation |
Similar to emb2411 (embryo defective 2411); ATP binding / ATP-de pendent DNA helicase/ DNA binding. (Os04t0588200-00) |
Parent gene strand | + |
Alternative splicing | Os04g0588200_circ_g.1 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os04t0588200-00:11 |
Conservation Information | |
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Conserved circRNAs | osi_circ_014712 |
PMCS | 0.23452847 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
29723239-29726696(+) |
Potential amino acid sequence |
MDIEEMAWAPRYGLKGIIDASIRSRVSCNGSSYDRVMPLEFKTGKGTSGQTAVEHTAQVILYTL LMTERYLNKDIDLGLLYYLHTDQTLGIKVKRSDLIGLIMRRNELATEILKASISQSFPPMIQAH GGNAATSGLGDLFDNLVNHLTVAHHTFLKHWDRLIDLEARVSQVKKKEIFQPHHSNTGSRHSSP SYFVLDVTNGHSIDSSGKSKRYIYTFLRQKLQPETADQPGEHVESVDFSLKCGDSVVLSTKSGR IAVANGYIRDLSRAHITVSLPRRLRLPGSNSLLEQGDLQCEVWRIDKDESVSSFATMRLNLVQL FAENPQNSHLRKLIVDLEAPRFDSGGLLSQDPALSYIQSLPNLNNDQQRSLHKILAAKDYALIL GMPGTGKTYTMVHAVKSLLMRGESILLTSYTNSAIDNLLMKLKAEVMDIEEMAWAPRYGLKGII DASIRSRVSCNGSSYDRVMPLEFKTGKGTSGQTAVEHTAQVILYTLLMTERYLNKDIDLGLLYY LHTDQTLGIKVKRSDLIGLIMRRNELATEILKASISQSFPPMIQAHGGNAATSGLGDLFDNLVN HLTVAHHTFLKHWDRLIDLEARVSQVKKKEIFQPHHSNTGSRHSSPSYFVLDVTNGHSIDSSGK SKRYIYTFLRQKLQPETADQPGEHVESVDFSLKCGDSVVLSTKSGRIAVANGYIRDLSRAHITV SLPRRLRLPGSNSLLEQGDLQCEVWRIDKDESVSSFATMRLNLVQLFAENPQNSHLRKLIVDLE APRFDSGGLLSQDPALSYIQSLPNLNNDQQRSLHKILAAKDYALILGMPGTGKTYTMVHAVKSL LMRGESILLTSYTNSAIDNLLMKLKAEVMDIEEMAWAPRYGLKGIIDASIRSRVSCNGSSYDRV MPLEFKTGKGTSGQTAVEHTAQVILYTLLMTERYLNKDIDLGLLYYLHTDQTLGIKVKRSDLIG LIMRRNELATEILKASISQSFPPMIQAHGGNAATSGLGDLFDNLVNHLTVAHHTFLKHWDRLID LEARVSQVKKKEIFQPHHSNTGSRHSSPSYFVLDVTNGHSIDSSGKSKRYIYTFLRQKLQPETA DQPGEHVESVDFSLKCGDSVVLSTKSGRIAVANGYIRDLSRAHITVSLPRRLRLPGSNSLLEQG DLQCEVWRIDKDESVSSFATMRLNLVQLFAENPQNSHLRKLIVDLEAPRFDSGGLLSQDPALSY IQSLPNLNNDQQRSLHKILAAKDYALILGMPGTGKTYTMVHAVKSLLMRGESILLTSYTNSAID NLLMKLKAEVMDIEEMAWAPRYGLKGIIDASIRSRVSCNGSSYDRVMPLEFKTGKGTSGQTAVE HTAQVILYTLLMTERYLNKDIDLGLLYYLHTDQTLGIKVKRSDLIGLIMRRNELATEILKASIS QSFPPMIQAHGGNAATSGLGDLFDNLVNHLTVAHHTFLKHWDRLIDLEARVSQVKKKEIFQPHH SNTGSRHSSPSYFVLDVTNGHSIDSSGKSKRYIYTFLRQKLQPETADQPGEHVESVDFSLKCGD SVVLSTKSGRIAVANGYIRDLSRAHITVSLPRRLRLPGSNSLLEQGDLQCEVWRIDKDESVSSF ATMRLNLVQLFAENPQNSHLRKLIVDLEAPRFDSGGLLSQDPALSYIQSLPNLNNDQQRSLHKI LAAKDYALILGMPGTGKTYTMVHAVKSLLMRGESILLTSYTNSAIDNLLMKLKAE(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |