Detail information of Os04g0588200_circ_g.2


General Information
CircRNA Name Os04g0588200_circ_g.2
ID in PlantcircBase osa_circ_025015
Alias NA
Organism Oryza sativa
Position chr4: 29723235-29726699  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0588200
Parent gene annotation Similar to emb2411 (embryo defective 2411); ATP binding / ATP-de
pendent DNA helicase/ DNA binding. (Os04t0588200-00)
Parent gene strand +
Alternative splicing Os04g0588200_circ_g.1
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0588200-00:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCATGCCGTGAAGTCATTATTGATGAGAGGGGAATCTATTTTGCTAACCTCATATACCAATTCA
GCTATAGATAATTTGCTTATGAAGTTGAAGGCTGAGgtaatggatattgaggagatggcctggg
ctccaagatatggtttgaaagggattattgatgcttctattagatcaagggtttcatgcaatgg
tagttcat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1290
Transcript exons: 29723235-29723387,29724196-29724251,29724328-29724388,29
724460-29724570,29724814-29724948,29725021-29725251,2972
5805-29725879,29725965-29726086,29726185-29726257,297263
42-29726446,29726532-29726699
GTAATGGATATTGAGGAGATGGCCTGGGCTCCAAGATATGGTTTGAAAGGGATTATTGATGCTT
CTATTAGATCAAGGGTTTCATGCAATGGTAGTTCATACGACAGAGTAATGCCTCTGGAGTTCAA
AACTGGTAAAGGAACTAGTGGTCAGACAGCTGTGGAACACACTGCCCAAGTGATATTGTACACG
CTATTGATGACGGAGAGATACTTGAACAAGGATATTGACTTGGGTCTTCTGTATTATCTTCACA
CAGACCAAACATTGGGCATCAAAGTCAAGAGGTCTGATTTAATTGGATTAATAATGCGTCGGAA
TGAGCTTGCCACTGAGATCCTGAAGGCATCGATTTCACAGAGTTTTCCCCCGATGATACAGGCG
CATGGAGGCAATGCTGCAACTAGTGGGCTTGGTGATTTATTTGATAATCTCGTGAATCACTTGA
CAGTTGCACATCATACCTTTCTTAAACACTGGGACAGATTGATCGATCTTGAAGCTAGAGTTTC
TCAGGTCAAGAAGAAGGAAATTTTCCAGCCACATCATTCAAATACTGGGAGCAGGCATTCTTCC
CCATCTTATTTTGTCCTTGATGTTACAAATGGACATTCAATAGATTCATCTGGAAAAAGCAAAA
GATACATATATACTTTTCTGCGCCAGAAGTTGCAGCCTGAGACAGCTGATCAGCCAGGAGAACA
TGTTGAAAGTGTAGATTTTAGCCTCAAATGCGGTGATTCTGTGGTGCTTAGCACAAAATCTGGG
CGAATAGCTGTTGCAAATGGATACATAAGGGACCTCAGCCGTGCCCATATAACGGTTTCATTGC
CACGACGTCTGAGACTTCCAGGAAGTAATTCCTTGTTAGAGCAAGGAGATCTCCAATGTGAAGT
TTGGCGTATAGATAAGGATGAGTCTGTTTCTTCATTTGCTACCATGAGACTCAACCTTGTCCAA
CTATTTGCTGAGAATCCACAAAACTCTCACCTAAGGAAGTTGATTGTTGACCTCGAGGCTCCCA
GATTTGATAGTGGAGGACTCCTAAGTCAAGATCCGGCACTATCATATATACAATCATTGCCAAA
TTTGAACAATGACCAACAGAGATCGCTGCATAAAATTCTAGCAGCAAAAGATTATGCGCTTATC
CTAGGAATGCCTGGAACAGGCAAAACATATACGATGGTGCATGCCGTGAAGTCATTATTGATGA
GAGGGGAATCTATTTTGCTAACCTCATATACCAATTCAGCTATAGATAATTTGCTTATGAAGTT
GAAGGCTGAG

Genomic sequence GTAATGGATATTGAGGAGATGGCCTGGGCTCCAAGATATGGTTTGAAAGGGATTATTGATGCTT
CTATTAGATCAAGGGTTTCATGCAATGGTAGTTCATACGACAGAGTAATGCCTCTGGAGTTCAA
AACTGGTAAAGGAACTAGTGGTCAGGTAAGCATATGCTCCTGGATAGTGGATCCACTTGAAGAT
ATATTATATCTTTTTCTGGCATGAGATATTTTTGTCACCGGGGTTCTGGAAACTATTTATGCAA
TAAATTAGTGAAGTATTGCAACAACCAGGCTTCTTGAAAGATTGTGCTGATTCCATAATCCATA
TTAATTCTTACAAGTAGTCATGCTCTCAATTTTTTAATCAAAACCTGACGAGTTCATTGAGGTT
TATATTGCACAGGCCAGAACTGTTGTTTTCTGTCTGTTTTCCATAATGTAATTACTGGTTGCTT
ACTTGAATTAGATTCCCTGCTCTATTTTATCCAAAACTTTAAGCTTTAGTTACAATTGACTAGA
AACCTGTCAACCACCTAGTCATGTCCATTCTGTGGCAACAACCAATCAATAATAATGTCCTACA
ACAACTAATCGTACCTTAAAAAAACCCAATCATAGTTCATTACAAAATAATAATTAATCAATAA
TCCGGAGCCTCAGTTCCATTCTACTTTCACAAGGTCAACATCCTTCAGTAGTTTTGATAATTAA
TACATGTCACATGTAGCGGCATCCAAATATATATTTTGATACCTTTTTTGAAATGTGATTGTGA
CTATTAGTGTTATCTTTACTTTATGTCCATTTCTGAAAAGAATATTGTGTTATTTTTGTGGTGT
TTCACATACTGTGTAGCACTCTAGTGTCTCCTATTTACCTAACCATGTCTGAAAAAACAACAAT
TTAGTCCTTCAGAATAGATCCAGTTACTTCTCTATTGCTCTTCACAATGGTTTATATATTTCCA
GACAGCTGTGGAACACACTGCCCAAGTGATATTGTACACGCTATTGATGACGGAGAGGTATGAT
CTATCTATTTCTTCCACTGCAGGCTTTCCATATATATATATTCCTTACCATGCTTTTCCATGTC
TTCAGATACTTGAACAAGGATATTGACTTGGGTCTTCTGTATTATCTTCACACAGACCAAACAT
TGGTAATCTTCTAAAACGACACTCAACATAAATTCTGTACCCATCCTTATCCATTTCTTGTTAA
TTTCTGAAGGGCATCAAAGTCAAGAGGTCTGATTTAATTGGATTAATAATGCGTCGGAATGAGC
TTGCCACTGAGATCCTGAAGGCATCGATTTCACAGAGTTTTCCCCCGATGATACAGGTGGAACT
AAAAACTTGTACATAAGTAATTCATTTGTTAGAACTCAAACAAAATCTTTCTTTCAGAGTCCAT
CTACATGTAATGGATGTCGACACCTGGTTTCATGCACCATATACCACAAGGTTCAATAACTCTA
TTCTTTTTAATATAAATGTGTTTTTTGATACAGTCCTGTTGGTACAAATTTGTTCAATTACATA
ATATATACATGTGAAAAGCCATACTTATATTCTGATGCAACAGGCGCATGGAGGCAATGCTGCA
ACTAGTGGGCTTGGTGATTTATTTGATAATCTCGTGAATCACTTGACAGTTGCACATCATACCT
TTCTTAAACACTGGGACAGATTGATCGATCTTGAAGCTAGAGTTTCTCAGGTATCTTTAGCTTT
TCTCACGTGCCGTGTATTTGATTTGTACTCTCTTGATCTCATCTCATGCAAAATTCAGGTCAAG
AAGAAGGAAATTTTCCAGCCACATCATTCAAATACTGGGAGCAGGCATTCTTCCCCATCTTATT
TTGTCCTTGATGTTACAAATGGACATTCAATAGATTCATCTGGAAAAAGCAAAAGATACATATA
TACTTTTCTGCGCCAGAAGTTGCAGCCTGAGACAGCTGATCAGCCAGGAGAACATGTTGAAAGT
GTAGATTTTAGCCTCAAATGCGGTGATTCTGTGGTAAACCTTGTACACTTTCTGTATTCAATAT
TCAGCAACATTACTATGTTAGCTATTTCAAGTTCCCAGCAACATTGATATTTTTATTGCATATA
TTTGGCACACCATATTGCAAATTTGTAATGTATGGCTCCATCTCATTTTGTTTGGAGTGTAGGG
TTCTTTCCGTTTGAACTGTTATGTGCTTAATGTTGGTAAGGAAGTAGAACTATAGGTTCATAGA
ATATGCTCAGTGCATATAAGGAGGTTAAATGGCAAATATAATACCAGTTGAAAACTTCTGCAGC
TACTGCTAACCGATCAATCAGCAACAGCCAGCTAACACTTTGGAGTATTGTAGCGTTATATTAC
TTTGTTTTTATCCTCCTGTTTTGTGATGTTTACTTTAGTGCTGTAGGCCTATGGCCACAAAGGG
GTCATTTTTTTATGCGTTATTACACATATAGTAGCTCACACCCCTTTGCTTCATGGATACTTAG
CTATTATAGTGATGCATGCTGGTTTATTTTTCTCCATAATGAAGTGTGTCATGTTTTCTTCTAC
TTTTCATTAGGTGCTTAGCACAAAATCTGGGCGAATAGCTGTTGCAAATGGATACATAAGGGAC
CTCAGCCGTGCCCATATAACGGTATTACCTGACCTTGCGAACCTGCTTAGGCATCCATTTCAAT
TTATTAGGTTGATTATTAATATTTCAACTGGAATTTTTGTAGGTTTCATTGCCACGACGTCTGA
GACTTCCAGGAAGTAATTCCTTGTTAGAGCAAGGAGATCTCCAATGTGAAGTTTGGCGTATAGA
TAAGGATGAGTCTGTTTCTTCATTTGCTACCATGAGGTTGGCCCTTGTTTTATTTTTTTTGTTG
AAGGTTCTGAATTAGTAATTTAGAAAAGTTCCTTCTTCCTAAATAAAGTTTGTATTTGAACTGT
TGCCAGACTCAACCTTGTCCAACTATTTGCTGAGAATCCACAAAACTCTCACCTAAGGAAGTTG
ATTGTTGACCTCGAGGTCTGTTCGTCCACTAGCCTATTCGTGCTATGTTTCTCCATACTGTTTT
TGTTGTCTGTAATTTCCTTATTTGGATGTTGATAGGCTCCCAGATTTGATAGTGGAGGACTCCT
AAGTCAAGATCCGGCACTATCATATATACAATCATTGCCAAATTTGAACAATGACCAACAGAGA
TCGCTGCATAAAGTAAATCTTTGGTCTTTAGTTCATTATTTTTTTTCTTCTGAAAATTCAATGT
CACTATGTAAAGCGTACACTATGTTGCTTTCAGATTCTAGCAGCAAAAGATTATGCGCTTATCC
TAGGAATGCCTGGAACAGGCAAAACATATACGATGGTGCATGCCGTGAAGTCATTATTGATGAG
AGGGGAATCTATTTTGCTAACCTCATATACCAATTCAGCTATAGATAATTTGCTTATGAAGTTG
AAGGCTGAG
Conservation Information
Conserved circRNAs osi_circ_014712
PMCS 0.23452847
Functional Information
Coding potential Y
Potential coding position 29723239-29726696(+)
Potential amino acid sequence MDIEEMAWAPRYGLKGIIDASIRSRVSCNGSSYDRVMPLEFKTGKGTSGQTAVEHTAQVILYTL
LMTERYLNKDIDLGLLYYLHTDQTLGIKVKRSDLIGLIMRRNELATEILKASISQSFPPMIQAH
GGNAATSGLGDLFDNLVNHLTVAHHTFLKHWDRLIDLEARVSQVKKKEIFQPHHSNTGSRHSSP
SYFVLDVTNGHSIDSSGKSKRYIYTFLRQKLQPETADQPGEHVESVDFSLKCGDSVVLSTKSGR
IAVANGYIRDLSRAHITVSLPRRLRLPGSNSLLEQGDLQCEVWRIDKDESVSSFATMRLNLVQL
FAENPQNSHLRKLIVDLEAPRFDSGGLLSQDPALSYIQSLPNLNNDQQRSLHKILAAKDYALIL
GMPGTGKTYTMVHAVKSLLMRGESILLTSYTNSAIDNLLMKLKAEVMDIEEMAWAPRYGLKGII
DASIRSRVSCNGSSYDRVMPLEFKTGKGTSGQTAVEHTAQVILYTLLMTERYLNKDIDLGLLYY
LHTDQTLGIKVKRSDLIGLIMRRNELATEILKASISQSFPPMIQAHGGNAATSGLGDLFDNLVN
HLTVAHHTFLKHWDRLIDLEARVSQVKKKEIFQPHHSNTGSRHSSPSYFVLDVTNGHSIDSSGK
SKRYIYTFLRQKLQPETADQPGEHVESVDFSLKCGDSVVLSTKSGRIAVANGYIRDLSRAHITV
SLPRRLRLPGSNSLLEQGDLQCEVWRIDKDESVSSFATMRLNLVQLFAENPQNSHLRKLIVDLE
APRFDSGGLLSQDPALSYIQSLPNLNNDQQRSLHKILAAKDYALILGMPGTGKTYTMVHAVKSL
LMRGESILLTSYTNSAIDNLLMKLKAEVMDIEEMAWAPRYGLKGIIDASIRSRVSCNGSSYDRV
MPLEFKTGKGTSGQTAVEHTAQVILYTLLMTERYLNKDIDLGLLYYLHTDQTLGIKVKRSDLIG
LIMRRNELATEILKASISQSFPPMIQAHGGNAATSGLGDLFDNLVNHLTVAHHTFLKHWDRLID
LEARVSQVKKKEIFQPHHSNTGSRHSSPSYFVLDVTNGHSIDSSGKSKRYIYTFLRQKLQPETA
DQPGEHVESVDFSLKCGDSVVLSTKSGRIAVANGYIRDLSRAHITVSLPRRLRLPGSNSLLEQG
DLQCEVWRIDKDESVSSFATMRLNLVQLFAENPQNSHLRKLIVDLEAPRFDSGGLLSQDPALSY
IQSLPNLNNDQQRSLHKILAAKDYALILGMPGTGKTYTMVHAVKSLLMRGESILLTSYTNSAID
NLLMKLKAEVMDIEEMAWAPRYGLKGIIDASIRSRVSCNGSSYDRVMPLEFKTGKGTSGQTAVE
HTAQVILYTLLMTERYLNKDIDLGLLYYLHTDQTLGIKVKRSDLIGLIMRRNELATEILKASIS
QSFPPMIQAHGGNAATSGLGDLFDNLVNHLTVAHHTFLKHWDRLIDLEARVSQVKKKEIFQPHH
SNTGSRHSSPSYFVLDVTNGHSIDSSGKSKRYIYTFLRQKLQPETADQPGEHVESVDFSLKCGD
SVVLSTKSGRIAVANGYIRDLSRAHITVSLPRRLRLPGSNSLLEQGDLQCEVWRIDKDESVSSF
ATMRLNLVQLFAENPQNSHLRKLIVDLEAPRFDSGGLLSQDPALSYIQSLPNLNNDQQRSLHKI
LAAKDYALILGMPGTGKTYTMVHAVKSLLMRGESILLTSYTNSAIDNLLMKLKAE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017