Detail information of AT1G10200_circ_g.5


General Information
CircRNA Name AT1G10200_circ_g.5
ID in PlantcircBase ath_circ_001836
Alias 1:3347021-3347441
Organism Arabidpsis thaliana
Position chr1: 3347021-3347441  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G10200
Parent gene annotation WLIM1
Parent gene strand -
Alternative splicing AT1G10200_circ_g.1 AT1G10200_circ_g.2 AT1G10200_circ_g.3 AT1G10200_circ_g.4 AT1G10200_circ_g.6 AT1G10200_circ_g.7
Support reads 2/2
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered AT1G10200.2:3
AT1G10200.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCGAAGCTTTTCTCAAGACTTCCAGTTCTCTTGAAGTTTTGATCGAAATGTGGTCTGCAGTAG
AGAACTCCTTCAAAGGAGTTGTAATTGCTAAGCTGActtctcaattggatacacggttttgtcg
caaccaacgcatttctctcgtgttccaccaaacatattcgaaactttggttccagcaggtctct
gttaaact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTCAATTGGATACACGGTTTTGTCGCAACCAACGCATTTCTCTCGTGTTCCACCAAACATA
TTCGAAACTTTGGTTCCAGCAGGTCTCTGTTAAACTTCTCTCATGTTAAATGTTAAAAAAATTC
AAGAACCTCAAAAACAGAAAAAGGGTTTTGTTCTGCTGTCCGAAAGTACCTCTCCCTCCAAAGG
CCTATCAGGTTTCCCAATCTTTGGTGTCCCTGTACATATATATGAATCAAACTTTAGATAGATA
ATTCCAAATTTGAAATCCCCACTCACAAAGCTTTTCACATTTTGATCTGTTTTTGGTAATTTAC
CTTCGAAGCTTTTCTCAAGACTTCCAGTTCTCTTGAAGTTTTGATCGAAATGTGGTCTGCAGTA
GAGAACTCCTTCAAAGGAGTTGTAATTGCTAAGCTGA
Conservation Information
Conserved circRNAs NA
PMCS 0.186921259
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020