Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G10200_circ_g.4 |
ID in PlantcircBase | ath_circ_001835 |
Alias | At_ciR3866, AT1G10200_C1 |
Organism | Arabidpsis thaliana |
Position | chr1: 3347021-3347437 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, find_circ, CIRI2 |
Parent gene | AT1G10200 |
Parent gene annotation |
WLIM1 |
Parent gene strand | - |
Alternative splicing | AT1G10200_circ_g.1 AT1G10200_circ_g.2 AT1G10200_circ_g.3 AT1G10200_circ_g.5 AT1G10200_circ_g.6 AT1G10200_circ_g.7 |
Support reads | 2/2 |
Tissues | leaf/root, aerial, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G10200.1:3 AT1G10200.2:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.488237956 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
3347084-3347023(-) 3347390-3347434(+) |
Potential amino acid sequence |
MFGGTREKCVGCDKTVYPIEKLSNYNSFEGVLYCRPHFDQNFKRTGSLEKSFEGTPKIGKPDRP LEGERPAGTKVSNMFGGTREKCVGCDKTVYPIEKLSNYNSFEGVLYCRPHFDQNFKRTGSLEKS FEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIEKLSNYNSFEGVLYCRPHF DQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPIEK(-) MWSAVENSFKGVVIAKLLNWIHGFVATNAFLSCSTKHIRNFGSSRSLSLQRPIRFPNLWCPFEA FLKTSSSLEVLIEMWSAVENSFKGVVIAKLLNWIHGFVATNAFLSCSTKHIRNFGSSRSLSLQR PIRFPNLWCPFEAFLKTSSSLEVLIEMWSAVENSFKGVVIAKLLNWIHGFVATNAFLSCSTKHI RNFGSSRSLSLQRPIRFPNLWCPFEAFLKTSSSLEVLIEMWSAVENSFKGVVIAK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
---|---|
References | Ye et al., 2015;Chu et al., 2017;Zhang et al., 2019 |