Detail information of BGIOSGA002654_circ_g.3


General Information
CircRNA Name BGIOSGA002654_circ_g.3
ID in PlantcircBase osi_circ_001769
Alias 1:1097423|1099425
Organism Oryza sativa ssp. indica
Position chr1: 1097423-1099425  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA002654
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA002654_circ_g.2 BGIOSGA002654_circ_g.4 BGIOSGA002654_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA002654-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTTTTGGTGCTATTTTTAATTGCCTTGATCCCATATTAACCATTGTTTCGGGACTTAGTGTG
AGAGATCCATTCTTGACTCCATTTGACAAGAAGGATggtttcacttatcctgttcggagtcgat
ttctagaagatattctcgaaattactgggcacagattaactccttacaatcaaattgatgacta
tggtcaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTTCACTTATCCTGTTCGGAGTCGATTTCTAGAAGATATTCTCGAAATTACTGGGCACAGAT
TAACTCCTTACAATCAAATTGATGACTATGGTCAAGAGAAAAGTTGGAAGATGCAAAAGCAAGC
TCTAAGGAAGAGGAAGAGCCAAATTGCTTCGGTTGTAGAAGTATGTAGTTCCTGCATTTTTATG
CCCACTATTTCCTGTTCAGAGCTTTGGTCTCCCCTCTAAACTCATCTTTTGAGCAGGATACAGT
TCAAGCTGCTGATTTAAGGGACTACAGTGCACGAACTCGTGACTCACTATCCTGTTGGAATCCT
GATTCGATTGGTTTTAACTTGATAGAAAATGTCTTATGCCATATATGCCAAAAGGAAAGAGCTG
GCGCAGTTCTTGTATTTATGACTGGGTGGGATGACATCAATGCACTGAAAGAGCAGCTGCAAGC
AAACCCATTGCTTGGAGACCCTAGTAAAGTTTTACTGCTTGCATGTCATGGTTCAATGGCTAGC
TCAGAGCAGGTATTACAACAATGGTGATCTAATTTATATGTTTATTGTTACTTTTAGCACAGCC
ATGCTCAGTTCTCTGTTTTAAGCAATGGAATATTGATTGGCCTACCGTTTTCAATTTGATGTGC
TTAAGCGATAAGGTGTTGTCCAGTAACATGTGGCAGTACTTGTTTGATATAACGATATTTGAAA
CTTGCCTGCAGTCCTTATAACTTGCTTTGCTAATGCCAGTTCTACAATATTGCGTTTGGAATTT
CTATGTCCTAAGTTAATGTATGAATGTCATGTTTTGTAGGCTTATAACTTCTGTTAATGTGTTC
AACATATTATTGAAGCCCATATATTTCCTCATGTTTTACTCCATGATTATCATGTCATCCCATG
ATATGGTTCTGTTAGTGCTATTTAACTTATTCAGGTCATTTGCAGCCATATACAGAAAGCACCA
AATGATATCTGTGTCTTCTCTTATACCATTTATCATATATTGATATTACTGCCTCTTTGCTGTG
CAGAAACTAATATTTGATAGACCTGAGCCTGGTGTAAGGAAAATTGTTCTTGCAACCAATTTGG
CTGAAACAAGTATTACTATCAATGATGTAGTTTTTGTGGTTGATTGTGGCAAAGCAAAAGAGAC
ATCTTATGATGCATTGAACAACACTCCATGTTTGCTTCCAACCTGGATCTCCAAGGCTTCTGCC
AGACAGGTGTTTTTCTCTTGTTGGAGTATTACTAATTTTATTTTTTTCGTAACACTTTGAATGA
ATTTGCATTTTCTGGAATCAATATGCTAATAAATATTTTTTTAAACTTTAACACGCATATCATC
AACTTCTATCATATCATTTTGGCTAATTAAATTGTATAACAATTTAGAGACGAGGAAGAGCTGG
TCGAGTCCAACCAGGGGAGTGTTACCATCTATATCCACAATGTGTGTATGAAGCATTTGCTGAC
TATCAGTTGCCAGAACTCCTGAGAACTCCTCTGCAATCCCTCTGTTTGCAAATAAAAAGCTTGC
GCCTTGGGAGCATCTCTGAATTTTTATCCAGAGCTTTGCAATCACCTGAGTCTCTATCGGTACT
TGATTTCCGTATTAATCACAAGCCGCAAAAGTCTATCCTGTGTCTTGGAATGACTTGATAAATT
AATTTGAATTTTTTCAGGTAGAAAATGCCATTGAATATCTCAAAGTCATTGGAGCGTTTGATCG
TAATGAAGAGTTAACAATTCTAGGTATCAGATCCATCCTTCAAATCATCCGTTTATCACTGCTT
TATTGAATCATCTTGAGCATTTGTAGCATGTGCTAACTATACCCACGGATTGGCATTACCAGGA
AAGCACTTATCCATGCTTCCAGTTGAGCCTAAATTGGGGAAGATGCTGATTTTTGGTGCTATTT
TTAATTGCCTTGATCCCATATTAACCATTGTTTCGGGACTTAGTGTGAGAGATCCATTCTTGAC
TCCATTTGACAAGAAGGAT
Conservation Information
Conserved circRNAs osa_circ_000141*
PMCS
Functional Information
Coding potential Y
Potential coding position 1097538-1099422(+)
Potential amino acid sequence MQKQALRKRKSQIASVVEDTVQAADLRDYSARTRDSLSCWNPDSIGFNLIENVLCHICQKERAG
AVLVFMTGWDDINALKEQLQANPLLGDPSKVLLLACHGSMASSEQKLIFDRPEPGVRKIVLATN
LAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQRRGRAGRVQPGECYHLYP
QCVYEAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPESLSVENAIEYLKVIGAF
DRNEELTILGKHLSMLPVEPKLGKMLIFGAIFNCLDPILTIVSGLSVRDPFLTPFDKKDGFTYP
VRSRFLEDILEITGHRLTPYNQIDDYGQEKSWKMQKQALRKRKSQIASVVEDTVQAADLRDYSA
RTRDSLSCWNPDSIGFNLIENVLCHICQKERAGAVLVFMTGWDDINALKEQLQANPLLGDPSKV
LLLACHGSMASSEQKLIFDRPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNT
PCLLPTWISKASARQRRGRAGRVQPGECYHLYPQCVYEAFADYQLPELLRTPLQSLCLQIKSLR
LGSISEFLSRALQSPESLSVENAIEYLKVIGAFDRNEELTILGKHLSMLPVEPKLGKMLIFGAI
FNCLDPILTIVSGLSVRDPFLTPFDKKDGFTYPVRSRFLEDILEITGHRLTPYNQIDDYGQEKS
WKMQKQALRKRKSQIASVVEDTVQAADLRDYSARTRDSLSCWNPDSIGFNLIENVLCHICQKER
AGAVLVFMTGWDDINALKEQLQANPLLGDPSKVLLLACHGSMASSEQKLIFDRPEPGVRKIVLA
TNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQRRGRAGRVQPGECYHL
YPQCVYEAFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPESLSVENAIEYLKVIG
AFDRNEELTILGKHLSMLPVEPKLGKMLIFGAIFNCLDPILTIVSGLSVRDPFLTPFDKKDGFT
YPVRSRFLEDILEITGHRLTPYNQIDDYGQEKSWKMQKQALRKRKSQIASVVEDTVQAADLRDY
SARTRDSLSCWNPDSIGFNLIENVLCHICQKERAGAVLVFMTGWDDINALKEQLQANPLLGDPS
KVLLLACHGSMASSEQKLIFDRPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALN
NTPCLLPTWISKASARQRRGRAGRVQPGECYHLYPQCVYEAFADYQLPELLRTPLQSLCLQIKS
LRLGSISEFLSRALQSPESLSVENAIEYLKVIGAFDRNEELTILGKHLSMLPVEPKLGKMLIFG
AIFNCLDPILTIVSGLSVRDPFLTPFDKKD(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021