Detail information of Os06g0690700_circ_g.3


General Information
CircRNA Name Os06g0690700_circ_g.3
ID in PlantcircBase osa_circ_032129
Alias Os_ciR10585
Organism Oryza sativa
Position chr6: 28791621-28794696  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os06g0690700
Parent gene annotation Similar to Potential cadmium/zinc-transporting ATPase HMA1 (EC 3
.6.3.3) (EC 3.6.3.5). (Os06t0690700-01);Similar to HMA1 (Heavy m
etal ATPase 1); copper-exporting ATPase. (Os06t0690700-02)
Parent gene strand -
Alternative splicing Os06g0690700_circ_g.1 Os06g0690700_circ_g.2 Os06g0690700_circ_g.4 Os06g0690700_circ_g.5 Os06g0690700_circ_g.6
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0690700-02:4
Os06t0690700-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTCATCTAGCCATCTTTGCAATTTGGGCTTGTTTAGCTGGCCTTCTTCTGTCAACTGGACGAT
TCTGTTGAGTGTTGAATCCTCCCACGACTTGGTGACctccctcccttgaaactgcttttacttt
attcaacttgtcctctggctttaaacagcagtgaacttcgtcgatacaaacagctttagcaact
cttagagc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1039
Transcript exons: 28791621-28791837,28792446-28792610,28792798-28792903,28
793483-28793724,28794146-28794258,28794501-28794696
CTCCCTCCCTTGAAACTGCTTTTACTTTATTCAACTTGTCCTCTGGCTTTAAACAGCAGTGAAC
TTCGTCGATACAAACAGCTTTAGCAACTCTTAGAGCACTTGATTCATGATCTCCCGTAAGCATC
ATGATGCGAAGTTTAGCCTTGTCTCTTAAGGTAGATATAACTTCACATACACCAGAACGGGGTT
CATCCTCAAAGTGAAAAAGGGTGACCTTTTTATCCACTGTTAGAGCAGCCTGGACAAATTCAGG
CCCAAATGCAGAAGCTTTTACAGCCTCTTTTATCTGCTCAGATTCACCACTGGATCTGTATAGC
GAAGAAATGTATTCCACAGAACCAATTGATGCCTTAGAAAGTTCATCTTCATTGTTTCCAGCCT
TTACACCGCTCAAAGTAGCAACAACTCCTCTACCAGGTAAGCACTCAAAGCTTTCTACAGCAAC
CAGTGGGAGGTCCTTCCCAACAGAATGATCTAAAACTGCCCTTCCAATAGGATGAGTTGTTCCC
TTCTCCATAGCTGCAGCAACAGCTAGAGCTTCACTTTCACAGTTAGGAGTACAACAAGCCTGAT
CACTAAAATCATTTGTCACATCTGAATGCCCATGAATGGGTTCGATAGCTTTGCACATGAGCTT
CCCTGTTGTTAATGTTCCTGTCTTGTCAAAAGCAATAGACTGACAAGCAGAAAGAGCATCCAGC
ACATGTCCGCCTTTCAACAAAATTCCCTTGCTTGCAAGAGAACTGATCGCAGTTGCATATGCTA
ATGGAGCTACAGCCAATGCACATGGAGATGCAGCAACCATAAGTCCTAGCCCACGGTAAATTGA
GCCCCTACAAACTGAGTTGCCAAAAAAGGGCCACTTAAAGAGTAATGGTCCCAGAAGTGCGACA
ACTAAAGACAGGACCACAACAACTCTGCTATAGTGCTCTCCAAACTCATCTAGCCATCTTTGCA
ATTTGGGCTTGTTTAGCTGGCCTTCTTCTGTCAACTGGACGATTCTGTTGAGTGTTGAATCCTC
CCACGACTTGGTGAC

Genomic sequence CTCCCTCCCTTGAAACTGCTTTTACTTTATTCAACTTGTCCTCTGGCTTTAAACAGCAGTGAAC
TTCGTCGATACAAACAGCTTTAGCAACTCTTAGAGCACTTGATTCATGATCTCCCGTAAGCATC
ATGATGCGAAGTTTAGCCTTGTCTCTTAAGGTAGATATAACTTCACATACACCAGAACGGGGTT
CATCCTCAAAGTGAAAAAGGGTGACCTGAAATGAATTTTTCATCAGCAGATGGACAATGCATGG
CAGAGTACTTATGAAATAACCTAAATGGTGATAAAAAAAATGCAAACGGTTCATCTGCAAGGAA
ACTGAGCATGAAAGTGTGAACGGAAGTGACATTAGATAATAACAGTCTGTATTTCCATGTTACA
TGACCAAGATATTTGAACTTGTATGCAGCAATAAAGACTAGCAGCACCTCCTGGTTGTCTATTA
AAATTTAATTTTACTCCTGTTGCATTTCATGATTGATCTCCTAGCCACTTTGATACCAACTGAA
ATATATCACTTTCTATAAAAAAAATGCATATTACAATTTACAGTCAGCAAACATATGAACATTT
GGTTTTTAATCTCAGATTCACTCGAAAGAAAAAAAAAAAAGGCAAACCATCTGAACTTGATAGG
CTGAAGGCATATCCACCTTAGCTCCTAAACTACCATGTTGAATTACTTTAGCATTTATGCAATT
ATATAATACACCTATATTTACAGCAGACATCTGGACAGATTACTGTGGAACAATATAAAAATAA
TTTTAGAAAGGGAGAAGTATGCTGACAAATGAGAAGATTGTAATGTAATTAACTCACCTTTTTA
TCCACTGTTAGAGCAGCCTGGACAAATTCAGGCCCAAATGCAGAAGCTTTTACAGCCTCTTTTA
TCTGCTCAGATTCACCACTGGATCTGTATAGCGAAGAAATGTATTCCACAGAACCAATTGATGC
CTTAGAAAGTTCATCTTCATTGTTTCCAGCCTGTAACACATATATGAGGTATCAAGCTAACATA
CTAAAGATCAATCTTCTCAATAATTTGTATTTAAAAAACAAATTCTAGTGCTGTTTGTTTTCAA
ATCTATGAAACTACATTGCATTACATGACCCTTTTTTATGTCCAATTTTCAAGATAACCAAGCT
GATTGGAATATACTATATAATCTACCTTTACACCGCTCAAAGTAGCAACAACTCCTCTACCAGG
TAAGCACTCAAAGCTTTCTACAGCAACCAGTGGGAGGTCCTTCCCAACAGAATGATCTAAAACT
GCCCTGTGAATAATGCAATCAGGATGTGAGTTAGTATGTCAGATTATCCATCATTCTACAAAAT
TCATAACATACATTAGAAAAATGAAAAACAGAATCATACAGTGGCCTAAGAATCTCAACATAAT
TCTTAAAATAGTGGCAAAAAAAAAATTGGTCTCAACCTAGCAAACCTGATTTCAAATAAGTTGT
GGCATCAGACTTCAGGCATAGGCCTAGCGTTGAAAAAGAAGTTGACAATTTAATCAAGCTGATC
TGAAGTAAGCATATCTCAGGTTGATAGATACAATGAATTAGGTACTGGTTAAATAGCACTAAGG
ACGTTATCAAAAAAATAGCACTAAGGACCACTATGACTTTGGTCAAACTTCAAAGACCATTTGT
ATGAGCACAAAGTGTTGGCAAATACTTCATGCCAATGTTATGGCATCAAAAGAGGTCAACTAGT
GATGAACCATGGTATTATTACAATTAGCATGCAAAATTAAATATATACTACTACATGACTTCAT
CATCTAGCGTAAATAAAAAAAATCAAATAAGCAAAAAGACAGACAATGAGAATTTTGTCCATGC
TCTCACCTTCCAATAGGATGAGTTGTTCCCTTCTCCATAGCTGCAGCAACAGCTAGAGCTTCAC
TTTCACAGTTAGGAGTACAACAAGCCTGATCACTAAAATCATTTGTCACATCTGAATGCCCATG
AATGGGTTCGATAGCTTTGCACATGAGCTTCCCTGTTGTTAATGTTCCTGTCTTGTCAAAAGCA
ATAGACTGACAAGCAGAAAGAGCATCCAGCACATGTCCGCCTTTCAACAAAATTCCCTACAGAT
CACCCCCAAAGAAAGGTTTGTGAACAATTTTACTATGCAGAAGACTCTTGGAGAAGGTCATCAG
ACATGCCATATTGAACTAAAAAATATTTTGGCGAAAACTGCTAACATAACATGGTTTCATAGCA
TGCACTTAAAGCAACAATGGCTATCTTCCTGCTATTGGTTACAATGCAGCAATAATCATTTCAA
GAAATGATTCCAATTAATATCCCCTGATCTCTTCTAAGATTTGTGCACATAACTCTAGTATAGA
TAATGCAAAGGAAAAGAAGCAGCCTAGTAGACTAATAAAATTCCGAATAAAAATACCAGATTCT
TCATGTAATTTAGTAATTGAGTAAGCTTTCTCTTGCATGGAAAGAAGAAAAATGGCCAGTAGAA
CTCAAACGATGGAAACTTTCAAACAATACCTTGCTTGCAAGAGAACTGATCGCAGTTGCATATG
CTAATGGAGCTACAGCCAATGCACATGGAGATGCAGCAACCATAAGTCCTAGCCCACGGTAAAT
TGAGCCCCTACAAACTAAAGAAAATGTCAGTGCACAGAAAGCTTGATCATATAGTCAAATCAAT
CAGTTCAGTGCAAATTGCATGATCATCAAACTTCTTTCTCCTACAATTAAACATATTGGTTCAG
TACCCAGATCATTAAGAATAGCTCCCACCTAAAGCATATTCTACAATTATCAAAGGACCTAGTC
AGATTTGATCAATTATATCTGTGACAAGACATCTACAACACATAGTGTGACATTAGAAAAATAC
CTGAGTTGCCAAAAAAGGGCCACTTAAAGAGTAATGGTCCCAGAAGTGCGACAACTAAAGACAG
GACCACAACAACTCTGCTATAGTGCTCTCCAAACTCATCTAGCCATCTTTGCAATTTGGGCTTG
TTTAGCTGGCCTTCTTCTGTCAACTGGACGATTCTGTTGAGTGTTGAATCCTCCCACGACTTGG
TGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.108239337
Functional Information
Coding potential Y
Potential coding position 28794225-28794601(-)
Potential amino acid sequence MVAASPCALAVAPLAYATAISSLASKGILLKGGHVLDALSACQSIAFDKTGTLTTGKLMCKAIE
PIHGHSDVTNDFSDQACCTPNCESEALAVAAAMEKGTTHPIGRAVLDHSVGKDLPLVAVESFEC
LPGRGVVATLSGVKAGNNEDELSKASIGSVEYISSLYRSSGESEQIKEAVKASAFGPEFVQAAL
TVDKKVTLFHFEDEPRSGVCEVISTLRDKAKLRIMMLTGDHESSALRVAKAVCIDEVHCCLKPE
DKLNKVKAVSREGGHQVVGGFNTQQNRPVDRRRPAKQAQIAKMAR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015