Detail information of Os02g0641800_circ_g.2


General Information
CircRNA Name Os02g0641800_circ_g.2
ID in PlantcircBase osa_circ_015754
Alias Os_ciR7940
Organism Oryza sativa
Position chr2: 25768223-25769566  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os02g0641800
Parent gene annotation Similar to RNA helicase (Fragment). (Os02t0641800-01);Similar to
ATP-dependent RNA helicase dhh1. (Os02t0641800-02)
Parent gene strand +
Alternative splicing Os02g0641800_circ_g.3 Os02g0641800_circ_g.4 Os02g0641800_circ_g.5
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0641800-01:2
Os02t0641800-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTGATATTCTAGCCAGAGCAAAAAATGGAACTGGCAAGACTGCTGCATTTTGTATCCCTGCAC
TAGAAAAGATTGATCAAGAGAAAAACGCTATTCAAGttcacaagactggaaggcccaattgaag
cttccacctcaagatacacgatacaggacagaggtaaatcgcatttataaaattttcccctatt
ttttcttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 296
Transcript exons: 25768223-25768283,25769332-25769566
TTCACAAGACTGGAAGGCCCAATTGAAGCTTCCACCTCAAGATACACGATACAGGACAGAGGAT
GTTACAGCCACCAAAGGAAATGAGTTTGAAGACTATTTTCTCAAGCGTGAACTTCTGATGGGAA
TATATGAGAAAGGATTTGAAAGACCCTCTCCGATCCAAGAAGAAAGCATTCCTATTGCATTAAC
TGGTAGTGATATTCTAGCCAGAGCAAAAAATGGAACTGGCAAGACTGCTGCATTTTGTATCCCT
GCACTAGAAAAGATTGATCAAGAGAAAAACGCTATTCAAG

Genomic sequence TTCACAAGACTGGAAGGCCCAATTGAAGCTTCCACCTCAAGATACACGATACAGGACAGAGGTA
AATCGCATTTATAAAATTTTCCCCTATTTTTTCTTCAAAGCCAGGCAACCGGTGCTTTGTATGC
TAAGGATTACACTTGACAATTGTAATTGCAAAACATGTTGACTGTCATCTGCGCTTTGCCCTAC
CTATCAATTGTTATTCTGCCAAACAATTCAGTGTGGCAGGAGTTCCTTTACCTTTATGATTTTT
TGGTGTCGCACATTGTAAGCTAATTACTATCTCCAGTCACAAATACATGTCTTGAAAATTGACA
TGGCCTTCCAAATACAGCTTTGACACTAATTTCTAATTTAATGTATTAATAGAACCCACTAAAG
TTATAATGTTATGAAAAATCACCTTTCAAGACAAATTTACATATATTATGTTCATGTATCCAAT
CTAAATATTGTAAATGGTCTTGAAAGTTTTACTAAATGCTTGTCCAAAACAAGAATTATTTGTG
ACCCAAGGGATTATTAATTCCGATGATTGAAATTTAATTTGCTAAACTGGGTTTGAACATCTTT
TCACACCCATGAGATATCCTAATGTTGCTAATCGATGCTCTTTATTTCTGTTATCCAATTCAAA
CAAACAAAGTTTAATCCTATGTGGTCATTGTAATATCATGTTGATACCTTCTTGTCTAAAACAA
AATAATACCTTGATGACTTAAAACATGCACATTAAGTGTTGTTAAGCTGGAATGCCCCAAGCTC
CTTACTATCCTGGAGGCCACATGACTCAGTTAAATAATTAAAGTTTCATCTTACTGAGTTACTG
TGCTCTTATATGTTTTCCCTTGTGCTCTTTAATCTTATTTGTATAATTTTATCTTTGTATAGTT
CTTCCCCACTGTCTTGATTGAAAGAATAATTGAATTTTCAAAAGAATGTGCTCTCATGGCTTGA
GTTTGCTCTGGATATCGACATTCTTATTTTCTTGCTCTTATTTTTTTTGCCTATTCTTTTATTT
TATTTGGAGATATTATTTATGAGTTTATATGATGTTGGTGTCATACTCTCTGCATACTTTATTA
TATTCTGCTGTTGTTGCACAGGATGTTACAGCCACCAAAGGAAATGAGTTTGAAGACTATTTTC
TCAAGCGTGAACTTCTGATGGGAATATATGAGAAAGGATTTGAAAGACCCTCTCCGATCCAAGA
AGAAAGCATTCCTATTGCATTAACTGGTAGTGATATTCTAGCCAGAGCAAAAAATGGAACTGGC
AAGACTGCTGCATTTTGTATCCCTGCACTAGAAAAGATTGATCAAGAGAAAAACGCTATTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.290722191
Functional Information
Coding potential Y
Potential coding position 25769393-25768245(+)
Potential amino acid sequence MGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQEKNAIQVHKTGR
PN*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017