Detail information of Os02g0641800_circ_g.5


General Information
CircRNA Name Os02g0641800_circ_g.5
ID in PlantcircBase osa_circ_015757
Alias NA
Organism Oryza sativa
Position chr2: 25769332-25773091  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os02g0641800
Parent gene annotation Similar to RNA helicase (Fragment). (Os02t0641800-01);Similar to
ATP-dependent RNA helicase dhh1. (Os02t0641800-02)
Parent gene strand +
Alternative splicing Os02g0641800_circ_g.2 Os02g0641800_circ_g.3 Os02g0641800_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0641800-02:7
Os02t0641800-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCAAGCTATATATTGCCAATAATTTGACAGAGTTCCAGCGTGTATTCACTTTCTCTAAGGGTA
ATAAGAAGACAATTCTTGTAAATACCAGCTCATCAGgatgttacagccaccaaaggaaatgagt
ttgaagactattttctcaagcgtgaacttctgatgggaatatatgagaaaggatttgaaagacc
ctctccga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1226
Transcript exons: 25769332-25769566,25769799-25770037,25771207-25771458,25
771550-25771730,25772371-25772459,25772776-25772849,2577
2936-25773091
GATGTTACAGCCACCAAAGGAAATGAGTTTGAAGACTATTTTCTCAAGCGTGAACTTCTGATGG
GAATATATGAGAAAGGATTTGAAAGACCCTCTCCGATCCAAGAAGAAAGCATTCCTATTGCATT
AACTGGTAGTGATATTCTAGCCAGAGCAAAAAATGGAACTGGCAAGACTGCTGCATTTTGTATC
CCTGCACTAGAAAAGATTGATCAAGAGAAAAACGCTATTCAAGTTGTTATATTGGTTCCCACAA
GGGAGCTGGCTTTGCAAACGTCACAAGTTTGTAAAGAGCTTGGGAAACATCTGAAGATCCAGGT
CATGGTCACCACTGGAGGAACCAGCCTGAAAGATGATATCATTCGTCTCTATCAACCTGTCCAT
TTACTTGTTGGAACGCCTGGGCGTATTTTGGACCTTACAAAGAAAGGTATCTGCATTTTGAAGG
ACTGCTCTATGCTTATCATGGATGAGGCAGACAAGCTTCTCTCTCCTGAGTTCCAGCCTTCCGT
GGAACAGCTGATTCGTTACCTTCCAGCGAGCCGGCAAATTTTGATGTTCTCGGCAACGTTCCCT
GTGACTGTGAAGGAGTTCAAGGACAAATACCTGCCTAAACCTTATGTTATTAACCTTATGGATG
AACTTACACTGAAGGGAATTACACAGTTTTATGCTTTTGTAGAAGAAAGGCAGAAAGTTCATTG
CCTTAACACTCTCTTTTCCAAGCTTCAAATCAACCAATCAATAATCTTCTGCAACTCTGTAAAT
CGTGTTGAGCTTCTGGCAAAGAAGATCACGGAGCTTGGTTACTCTTGCTTCTACATCCATGCAA
AGATGCTGCAAGACCATCGTAATAGAGTTTTCCATGATTTCCGTAATGGGGCATGCAGGAACCT
GGTTTGTACAGATCTTTTCACAAGGGGAATTGACATTCAAGCTGTTAATGTTGTTATCAATTTT
GATTTCCCCAAAACCGCTGAAACATACCTCCACAGGGTTGGTAGATCTGGGAGATTTGGCCATC
TTGGCCTGGCTGTGAATTTGATCACCTATGAGGATCGGTTTAACTTGTATAGGATTGAGCAAGA
GCTTGGGACTGAGATAAAACCAATTCCTCCTCAGATTGACCAAGCTATATATTGCCAATAATTT
GACAGAGTTCCAGCGTGTATTCACTTTCTCTAAGGGTAATAAGAAGACAATTCTTGTAAATACC
AGCTCATCAG

Genomic sequence GATGTTACAGCCACCAAAGGAAATGAGTTTGAAGACTATTTTCTCAAGCGTGAACTTCTGATGG
GAATATATGAGAAAGGATTTGAAAGACCCTCTCCGATCCAAGAAGAAAGCATTCCTATTGCATT
AACTGGTAGTGATATTCTAGCCAGAGCAAAAAATGGAACTGGCAAGACTGCTGCATTTTGTATC
CCTGCACTAGAAAAGATTGATCAAGAGAAAAACGCTATTCAAGGTTTGTTCCAGAATCCAAACT
ATTAAACTTATTTTGTACCAACTCTCACAGTCAAACATGCTATAAACCTGTGCCTTTATAATGC
CTGTTGGACCTCCTTTGGTACCGTTTATTTTATATTATTACTTTTTTTGGGGTGTTGGGGGGGG
GGTGGCCTGTAGGGGATCTTCTTTAGTAAATATAATATTATATTGTGCAAGAATGGTTCAATGA
TTGCTCTTGTTATTTGTAGTTGTTATATTGGTTCCCACAAGGGAGCTGGCTTTGCAAACGTCAC
AAGTTTGTAAAGAGCTTGGGAAACATCTGAAGATCCAGGTCATGGTCACCACTGGAGGAACCAG
CCTGAAAGATGATATCATTCGTCTCTATCAACCTGTCCATTTACTTGTTGGAACGCCTGGGCGT
ATTTTGGACCTTACAAAGAAAGGTATCTGCATTTTGAAGGACTGCTCTATGCTTATCATGGATG
AGGTAATTCATCTATTCTTTGCAATTGATATTATATTCTCATGAAAACTGTTCAGCAGTTCAGT
ACTCAGTGCCTTCCCAGTTGTATATGTTATTTCATGGCTCAAAAGATTATTTTATAAGGAGAAA
TTAGGGATTGGGCTAAAAAGAATAGTAAAAATCTCATTTACAATCAAACAATTAGTGACAAAAA
AAATTAGTGTTTCTATATACTTAATGCAAGTATTTTTTTTAGTTGCTCTTTCCTAAGTTTTTCC
TTCAAATTAATGTTTGCATCCTTCTTGGGTTGTGCTGAACCAATGAACCCCGTTTCTTGTGTTT
ACAACTGATTATTCTGCTTGCCAATACCCATATGCTGAATTCTTGTTATTACACTATCCCTTGT
TTGTACTTCTTTCCAGATATGTTTGTCTTTAGTAAATTTCACGAAAGCCCAGGTTTTCAGGCAT
CTGTAATGCAAAACCCATTGTATTTTAATTTGTTTTAATGAACCCCAGATTTTGGGAAACACTT
GACTACCTATTGCACTATTTTACTTGGATTGTAAATTTATTGCTTAAGACAACAGCAATGACAA
CACAACTAGGAATATTTTGGAACATCCTGCATACAGGGAAAAATAAGCACAAAAAAAAGATTTG
AGTAGCCCATTCAGAGTGTGCGGTGTGTCTATGATAGGTACTTGGCCACCGGGAGGTAGGGACT
TAGGGTGCGTTCACGAAACGAGAAAGCTCATTAACACATGATTAATTAAGTATTAACTACTATA
AACTTGAAAAATGGATTTATTTGTTTTTTAAAAGAAACTTCTACATATATTTTTTTTTTCACAA
AACACACTTTAGCACTTTGGAAAGCTAATGGAAAACAAGGAAGTTGTTGCTTGGAGTTGAAGCT
TAGAGCAGGGCCTTAGTATTAGTCCTTCTAAAAAGAACCAGTGTAATGGTTCATGAGGCGAAGT
AGTATCTTCAAGTGAGAACTGAGAAACATCGTGGTTTTTCTTTTTTGCACCATTTAAGATTCTA
GTGAACTATATGAACCTCTGTTTTTTGAGAATCTACGTTGCATGATTTGGCTTGATAACGATAA
TTTGTTTTGGTTGTGTAGCATTGAACATTTTAGTTGATAAGAATTTTTATCTTCTTACGAGTGA
AATATTGCCTTCTGTTCAGGCAGACAAGCTTCTCTCTCCTGAGTTCCAGCCTTCCGTGGAACAG
CTGATTCGTTACCTTCCAGCGAGCCGGCAAATTTTGATGTTCTCGGCAACGTTCCCTGTGACTG
TGAAGGAGTTCAAGGACAAATACCTGCCTAAACCTTATGTTATTAACCTTATGGATGAACTTAC
ACTGAAGGGAATTACACAGTTTTATGCTTTTGTAGAAGAAAGGCAGAAAGTTCATTGCCTTAAC
ACTCTCTTTTCCAAGGTTTTACCGATGAGCACCTTTGCTTTGTGTTCAGTTAGCCACTTTTACC
TCCCTTATAGCCTGTAAATCATGCACATTTGTTTTGATGCAGCTTCAAATCAACCAATCAATAA
TCTTCTGCAACTCTGTAAATCGTGTTGAGCTTCTGGCAAAGAAGATCACGGAGCTTGGTTACTC
TTGCTTCTACATCCATGCAAAGATGCTGCAAGACCATCGTAATAGAGTTTTCCATGATTTCCGT
AATGGGGCATGCAGGAACCTGGTTTGTACAGGTATGGAATTCTCCGTGTTCCGCATCAACTCTT
GACTGGTTCTATTCTTGATGGATATTTGTTACTGTTCACTGTCTAGTGAAATCTCATTAATGTC
CTACTAGAACTAATTGTTTCAGCCGATCTGAATGTATTTTGTTACTTCATCCCTGCTTTTGTAT
ATTCTTTTTCTTCTTAAAAAGAAGCGTTGATGACAGTGTTGGTGTGCTTTATTTACCCGCAATC
CAGATGTTCCGTAGATGGATTTATGTGAATACGCATGTGTTATATCTTATTTTACTAATGTATT
CATTATTTGTACATGTGCATATGTTGTTGTTAGCTGGTGGTATAATTAAAATGTATGCAACCTT
TTTGATCCAAGTGTAATTAATTTTCAAACTCACAATGTGTCATACATATATTTGAGATGTGTGG
CAACACAGGTACAATGAAAAGGAGGAAACAATATGCTAATTTTAATACTTCACTACCAAGTTCT
GTTTCTTGCAAGCCTCCATAATTCACTTATATGGAATAGTTTTGAAATGTTGTGATTTTGTGCA
AGTATATAGAAATGTGTGGATATATTGCTTACGGCTACACGAAATTCTGATATTCTTTCTTCTA
TTTTAACTTTTCATTTCTTTTTTCTTTGCAGATCTTTTCACAAGGGGAATTGACATTCAAGCTG
TTAATGTTGTTATCAATTTTGATTTCCCCAAAACCGCTGAAACATACCTCCACAGGGTATGGCA
TTTGAATAAATTCAGCTTTTGATCTTAGGCTTTAATCTAATTAGGATGTCATATGCTGCTATGA
GAATAATATTCTAGAAACTAATCTTAACCAGTAAGATGTTTGTACTAAGAAGAAAATGCACACA
CAAGTGTTAGATCAAATGTGGAAACATGCACACATATGTTTTATCATGTAATTGGTTGCCCCTG
TAATTTGTTCATAGTTTGGAACTAAATACCAACTGTTATTGTCATGGTATCTCTCCTTTGCAAT
GTTGTGTAGGCAGTGCAGTTCTTTAACTGTTATTTTGTTGGCCTTTTTCTAGGTTGGTAGATCT
GGGAGATTTGGCCATCTTGGCCTGGCTGTGAATTTGATCACCTATGAGGATCGGTTTAACTTGT
ATGAACAATTACCCACCACAATTTTATTCATGTATTTTATTCTGACGTTTGGTTCATTGAACTA
AGTTTTCTTTCTGGGAACAGGTATAGGATTGAGCAAGAGCTTGGGACTGAGATAAAACCAATTC
CTCCTCAGATTGACCAAGCTATATATTGCCAATAATTTGACAGAGTTCCAGCGTGTATTCACTT
TCTCTAAGGGTAATAAGAAGACAATTCTTGTAAATACCAGCTCATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.360242305
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017