Detail information of Zm00001d044648_circ_g.9


General Information
CircRNA Name Zm00001d044648_circ_g.9
ID in PlantcircBase zma_circ_007940
Alias zma_circ_0001415
Organism Zea mays
Position chr3: 233942295-233946661  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d044648
Parent gene annotation Alpha-L-arabinofuranosidase 1
Parent gene strand -
Alternative splicing Zm00001d044648_circ_g.1 Zm00001d044648_circ_g.2 Zm00001d044648_circ_g.3 Zm00001d044648_circ_g.4 Zm00001d044648_circ_g.5 Zm00001d044648_circ_g.6 Zm00001d044648_circ_g.7 Zm00001d044648_circ_g.8 Zm00001d044648_circ_g.10
Support reads NA
Tissues leaf, root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Zm00001d044648_T005:12
Zm00001d044648_T002:4
Zm00001d044648_T004:12
Zm00001d044648_T003:12
Zm00001d044648_T007:10
Zm00001d044648_T006:10
Zm00001d044648_T001:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGGAAATTCCATCAGTTTAGAAGCCCCGTGTTGATAAAAGATTTAACAGATCTGAAAACAATT
ACCATTGTTGAATACCCAGATTGGGGCAGCACCCAGgtcctccgcaagctttgacgtagatttc
aatataatacttagggggtcatgataggaaagaaaaataaataaagtgaagcagtgtaaactgg
tacctgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCCTCCGCAAGCTTTGACGTAGATTTCAATATAATACTTAGGGGGTCATGATAGGAAAGAAAA
ATAAATAAAGTGAAGCAGTGTAAACTGGTACCTGAAGGAACTCATAATATCCAAGCCCATCATC
AGTCCAGTAATGCCAAACATCCCCGAAGTGTCCAGGCCTCTCTTCCCATGGACCAATTGATTCT
CTCCATCTGAATGCATTTCTTAGCCAGTCACCTTCTACAAAACAACCTCCTACAGTAGTCGCAT
GGAATCTATCAAATATCTGAAACATCTATGAACACGTAATATATGTCCAAACATGAAGAACTTG
ATTTTAAATGTGAAAACACAGTGCATACCAGGAAACCTCAAGAATCGTGGTTTCAAATCCAAAA
GCATGGATATAAGTTCTGTGCGGAAACCATGTCCCTGTGTGTACAGAGAGAACCAGCTATAAAT
ATTCAGGTAAAGTTTTGCACAGTGAGAATTACCATACACTAGAAAGAGATTGTTTTTGTTTCTA
GGTCTTTGGCAAGATAAATGAATCTAATACATTTGGTACACTAAATAGATAGCTAACATATAAA
TTCAGACACACAGGGTATCCATCAGAAACAATTAATTGGTGGTTACACTCATCAAACAAACCAA
AGCAGTGAACTGGGTGCCATACCATCCTTGTATTGTGGTTACTGATCATCTCATCCTTATAAGC
TGGCTGCTGGCCACTTATCACCAGCCACCATTAACACAAGATAATTTTTAAGACGAAGAAACCT
CTTAAGCATCTCTTAAGCATTACAATATGTCAATATGTGATGGAAACATTGTACCGGCAGCAGC
AAGAAACTTGCGGTCAGTATACTCATTAAACATTGACAGCCACATACCGTGATTCATGATAAAG
TTCTTTACCATGAAGGCATCCATCGACAATTTGTTTAATCCACAGGAGGCTGTCGTTCTCACCA
TCAATGTACCATCATCCCGTACAGTAGATGGTGATGAACATGCAAAGCAAACACGTACAGGAGA
AAGGAAACCAACCAACACCAAGCAAAAACCTGATGTGGTTTTTATTTCATGAAGCAACAGTACG
TAGTACGTTATCCTGTATCGTGGTACACCAGTACAAAGCCTTTTTTATCGATCAAGATCGCTAA
CAGCACACCACACTCCACACCCTCTGGTTGCTGCCATCCGCGCGCTGTTTGTGTACTGTAATGT
GCAGCACACACATCATATCTCCGCCACAAGCTTGGGCTCAGCCAGCGCCAGATCGAAGGCGGTG
AAGGAGTGAGGAGCCAGCGTGACCTGCATCTGCTCCGCGGCGTTGCTCAGCTGGCTTTTCACCG
GCGCAACCTGCAAGCAGCAAGCTTTGGGGTTCAGAACAAGCTCCACACGTCGCTCCTTCCATTC
AGAAACCAACAAGCTTAGTGCATGCATGGACCATCGGTACGCATACCTTGTTCGGGTTACTGAA
GGAGTTCTCGTCCATGACGTTGCCAGACGTGAGGACGGTGGCGGTTGATCCCAGCGCGTTGACG
CTGGCCCCGAGTCCGCTCGTGGAGACCGTGAGGTTAACGGTGTCCGACCCGAAGTTCACGACCT
GCACAGCAGAAGCCACTTGAGAACGAAACACCTTTAGCCGCGCAGGCTAGGACGGATGCGATGC
GACAGACTCTACTACTTGCCTTCACTCTCAGGAAGCTATTCTCTGCATCCTGCCACGTGATCGC
AGACGCGGCCAGCGAACTCGAGTACCGGGAACTGATATTAACCGGATGAATCATGGCGCCGCTT
GACTCGCGGAAAATCGTCTGCATCCAGTAGCTAGGAGTTCCATAGTGTTGCCAGGAGTTGAAGA
CAATAGCGTCCGGGTTCCACCTGATCTCGTTTTGTTCGAAACAAAATCATCGCAGCGTTAGAGC
AACGGGAAAAGAACAAGTAGAGGGTAAAAAAAACCAAGAATACTAACGTTTGGTCATTGTCGTT
CACGAAGAGTGGAGCGTAACTTGCCATCTGAACGATATCACTGCAAAAAGGTCATCTAACTCAC
AGTAAAGACTATCCTTGGTAGTAGTAGAACCCCAAGCCCGCCAACGAAAATAAGGATCAGATCA
ACCAACTTGCAACCAAAAGGAGAGATCACCTGTTCTTCTCCAGACCAGTGAGGAAAGCAGCTTC
AGCCAACGAAGCAAGAAGACTGCCTCTACCCGCGTCACTTCTCCAGACAGCGTACTCGCTCACA
AAGGCCTGTGTTCGAATCATTTCAGCAACATTTTTACTGTATGGACAGGGTACTGGTGATGTCA
TAAATAAGCAAGAAAATCACTGGAGTTTCAGGGTCTTCAGAGAAACATGCAAATAGAACCACAC
GTCACATAAGCTCCTTATGAGTATTGCTCATCGTTATTCAGAATCACAACACCTCGGAGAATTG
TACCCTCCATCTCTTAAGGATTTTGCAAAGCATCAAAGGACCCATTTTTTATATACTACCCAAA
GAACATCCCAACTCCCAAGTGAATGCCAGGAATCCCTGATCGATGTAAATGACTGGTCGTGAAA
GAGGGCAGTCTCATAAGAGTCCTTGTGAAAATGAGACTTAGACTTACCTTAGGTCCACTACGTG
ATGTTCTGTCAAATGTGCTCCTCATGTTAAACAAAGTCTTAGAATCAGTATAGACCTAAGAGAA
AGAAGCACTGTTTAAATTTAAGAGAAGGCAAGCTGACCTTGACATCGAATAATTAGACAGAACC
ACAGAATCAAGGCAGAGAAAAAAATGAAACAAACAGACTTGGCAGTAAGGACTTTACATGGAAA
TCATACAAATCCGCAGGATGGTCAAGTGGTCTAGATGAACCATCACAGTTTGAAATCATCTGAA
TGTCTGGATAGGCCTCTCTTATAGCATTGTAGAATTTGAGGTAATTACCTGTTTAACAGACATA
AAGACTATCATTCCATGCAACTAAAAACAGGCTTAATATGTACAAAAAAATGTAGGTGAAGTAT
TTCCTTTGTCGACTTCCACTGGGAGTTATGTTCAGTTTAAAGTCTCTTTGCTAGTACAGAGACA
TCAAGTACATAATTGCCACTGTGCTGAAGACCCTTTTTTTTACGAAACTTGTGGAGAAGACATT
TTCAACTTATTTAAAGGAAGCAAATACAAATGTAGTTGATAAGTTTACCACGGTAGAACTTTTT
CCCGCAATCTTCATTTCCAATTGCGACATGTTTGACCAGGAAAGGTTCAGGGTGCCCCATTGCA
GCCCTAACAGAGCCCCATGTTGAATCTGCACTCCCCCTTGCAAATTCTAGACTGTCCAATACAT
CCTGTAGAAAACAAACAGTTCAATAAAATTAAAGGTAGAAGAATTATAAGTATAAGAATTACCT
AAGTCTATAGGAGATAATGGTATCTTATTGAGTCTGTTACTATTCATATAAACAAAATTAATTA
GTTCATGGACAATCTTGATAAAGGTGAGTGTATAACTCAAGTTAAGCGTCATCTCGGCATGTGA
ACTACCTGAATGAAAAGTAAAGGGTCACCCACTACTGTTATATCTTTTTCAGCATTCATGAAGA
CAGCTAAAAGAGAATAAAACTTCAGCATTATTCAAAACTGATAATATGTGTTGTTTTTTTTATG
GGGTGTCCCCGAGTGTGCAGGGCCTTCTTCAGGACATCGAGGAGGCAGTTGTGTGGTGTAAGGC
AGGTGCTTCAGGCCTGTGTGCCATCTGGCCTCCTTAGGTTTTTAGTGTGGTGGTTGTTGAGTTC
TTCCTAACGAATGTTTTTCTGTATCTTCGTTTTTGGCCACCGTGAGGTGGTGCTTCTGTACTGA
CCTACTTTGGTCCTTGTTTCTTTCTTCTTAATATAAATATACACAGCTCTTCTGTGTGTTCGAT
AAAAAAATGTGATGGTTCTCACTGTGATCTGAGCAATAAAGTTTTAATCTTTTTTTTTCTCAGA
TACACAGGATTTGTATTAACAAATAAGTTCTAATCTTGGATATGGTTTGTAGCTAAAAAAGACA
AATGGTATTATAATATCTAAGTATTTATTTACAATGGTAATTTGCACCCATGGCTGAGAAAGTA
CAACACATTAAAAAAATGAAGGTCCTTATATCATTTAAATTTTGAAGGCTTTATATCAACAAAT
GCTTAGTCTACTCGAGGTATAACTAGGGAGCTAAAAAGATACCTTTACAAAAGGGGCAATAGCT
ACAGTATCAACTTCATCATTGTGGCTTATTCCTGAGTTATAAGAGGGAAATTCCATCAGTTTAG
AAGCCCCGTGTTGATAAAAGATTTAACAGATCTGAAAACAATTACCATTGTTGAATACCCAGAT
TGGGGCAGCACCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.354853197
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b