Detail information of Zm00001d044648_circ_g.2


General Information
CircRNA Name Zm00001d044648_circ_g.2
ID in PlantcircBase zma_circ_001606
Alias circ1826
Organism Zea mays
Position chr3: 233939887-233944170  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d044648
Parent gene annotation Alpha-L-arabinofuranosidase 1
Parent gene strand -
Alternative splicing Zm00001d044648_circ_g.1 Zm00001d044648_circ_g.3 Zm00001d044648_circ_g.4 Zm00001d044648_circ_g.5 Zm00001d044648_circ_g.6 Zm00001d044648_circ_g.7 Zm00001d044648_circ_g.8 Zm00001d044648_circ_g.9 Zm00001d044648_circ_g.10
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered Zm00001d044648_T004:10
Zm00001d044648_T002:10
Zm00001d044648_T006:3
Zm00001d044648_T005:10
Zm00001d044648_T001:10
Zm00001d044648_T003:10
Zm00001d044648_T007:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCATGGCGCCGCTTGACTCGCGGAAAATCGTCTGCATCCAGTAGCTAGGAGTTCCATAGTGT
TGCCAGGAGTTGAAGACAATAGCGTCCGGGTTCCACcgtttggtcattgtcgttcacgaagagt
ggagcgtaacttgccatctgaacgatatcactgcaaaaaggtcatctaactcacagtaaagact
atccttgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTTTGGTCATTGTCGTTCACGAAGAGTGGAGCGTAACTTGCCATCTGAACGATATCACTGCAA
AAAGGTCATCTAACTCACAGTAAAGACTATCCTTGGTAGTAGTAGAACCCCAAGCCCGCCAACG
AAAATAAGGATCAGATGAACCAACTTGCAACCAAAAGGAGAGATCACCTGTTCTTCTCCAGACC
AGTGAGGAAAGCAGCTTCAGCCAACGAAGCAAGAAGACTGCCTCTACCCGCGTCACTTCTCCAG
ACAGCGTACTCGCTCACAAAAGCCTGTGTTCGAATCATTTCAGCAACATTTTTACTGTATGGAC
AGGGTACTGGTGATGTCATAAATAAGCAAGAAAATCACTGGAGCTTCAGGGTCTTCAGAGAAAC
ATGCAAATAGAACCACACGTCACATAAGCTCCCTATGAGTATTCCTCATCGTTATACAGAATCA
CAACACCTCGGAGAATTGTACCCTCCATCTCTTAAGGATTTTGCAAAGCATCAAAGGACCCATT
TTTTTATATACTACCCAAAGAACATCACAAGTGAATGCCAGGAATCCCTGATCGATGTAAATGA
CTGGTCGTGAAAGAGGGCTGTCTCATAAGAGTCCTTGTGAAAATGAGACTTAAGACTTACCTTA
GGTCCACTACGAGATGTTCTGTCAAATGTGCTCCTCATGTTAAACAAAGTCTTAGAATCAGTAT
AGACCTAAGAGAAAGAAGCACTGGTTAAATTTAAGAGAAGGCAAGCTGACCTTGACATCGAATA
ATTAGACAGAACCACAGAATCAAGGCAGAGAAAAAAATGAAACAAACAGACTTGGCAGTAAGGA
CTTTACATGGAAATCATACAAATCCGCAGGATGGTCAAGTGGTCTAGATGAACCATCACAGTTT
GAAATCATCTGAATGTCTGGATAGGCCTCTCTTATAGCATTGTAGAATTTGAGGTAATTACCTG
TTTAACAGACATAAAGACTATCATTCCATGCAACTAAAAGCAGGCTTAATATGTACAAAAAAAA
TGTAGGTGAAGTATTTCCTTTGTCGACTTCCACTGGGAGTTATGTTCAGTTTAAAGTCTCTTTG
CTAGTACAGAGACATCAAGTACATAATTGCCACTGTGCTGAAGACCCCTTTTTTTTTACGAAAC
TTGTGGAGAAGACATTTTCAACTTATTTAAAGGAAGCAAATACAAATGTAGTTGATAAGTTTAC
CACGGTAGAACTTTTTCCCGCAATCTTCATTTCCAATTGCGACATGTTTGACCAGGAAAGGTTC
AGGGTGCCCCATTGCAGCCCTAACAGAGCCCCATGTTGAATCTGCACTCCCCCTTGCAAATTCC
AGACTGTCCAATACATCCTGTAGAAAACAAACAGTTCAATAAAATTAAAGGTAGAAGAATTATA
AGTATAAGAATTACCTAAGTCAATAGGAGATAATGGTATCTTATTGAGTCTGTTACTATTCATA
TAAACAGAATTAATTAGTTCATGGACAATCTTGGTAAAGGTGAGCGTATAACTCAAGTTAAGCG
TCATCTCGGCATGTGAACTACCTGAATGAAAAGTAAAGGGTCACCCACTACTGTTATATCTTTT
TCAGCATTCATGAAGACAACTAAAAGAGAATAAAACTTCAGCATTATTCAAAACTGATAATATG
TGTTGCTTTTTTTATGGGGTGTGGGGTGTCCCCGAGTGTGCAGTGCCTTCTTCAGGACATCGAG
GAGGCAGATGTGTGGTGTAAGGCAGGTGCTTCAGGCCTGCGTGTCATCTGGCCTCCTTAGGTTT
TTTAGTGTGGTGGTTGTTGAGTTGAGTTCTTCCTAACGAATGTTTTTCTGTATCTTCGTTTGTG
GCCACTGTGAGGTGGTGCTTCTATACTGACCTACTTTGGTCCTTATTTCTTTCTTCTTAATATA
AATATACACAGCTCTTCTGCGTGTTCGATAAAAAAATGTGATGGTTCTCACTGTTATCTGAGCA
ATAAAGTTTTAATCTTTTTTTTTCTCAGATACACAGGATTTGTATTAACGAATAAGTTCTAATC
TTGGATATGGTTTGTAGCTAAAAAAAAAGACAAATGATATTATAATATCTAAGTATTTATTTAC
AATGGTAATTTGCACCCATGGCTGAGAAAGTACAACACATTAAAAAAATGAAGGTCCTTATATC
ATTATATCAATAAATTTTCAAGGCTGCTTAGTCTACTCGAGGTATAACTAGGGAGCTAAAAAGA
TACCTTTACAAAAGGGGCAATAGCTACAGTATCAACTTCATCATTGTGGCTTATTCCTGAGTTA
TAAGAGAGAAATTCCATCAGTTTAGAAGCCCCGTGTTGATAAAAGATTTAACAAATCTGAAAAC
AATTACCATTGTTGAATACCCATATTGGGGCAGCACCCAGGTCCTCCGCAAGCTTTGACGTAGA
TTTCAATATAATACTTAGGGGGTCATGATAGGAAAGAAAAATAAATAAAGTGAAGCAGTGTAAA
CTGGTACCTGAAGGAACTCATAATATCCAAGCCCATCATCAGTCCAGTAATGCCAAACATCCCC
GAAGTGTCCAGGCCTCTCTTCCCATGGACCAATTGATTCTCTCCATCTGAATGCATTTCTTAGC
CAGTCACCTTCTACAAAACAACCTCCTACAGTAGTCGCATGGAATCTATCAAATATCTGAAACA
TCTATGAACACGTAATATATGTCCAAACATGAAGAACTTGATTTTAAATGTGAAAACACAGTGC
ATACCAGGAAACCTCAAGAATCGTGGTTTCAAATCCAAAAGCATGGATATAAGTTCTGTGCGGA
AACCATGTCCCTGTGTGTACAGAGAGAACCAGCTATAAATATTCAGGTAAAGTTTTGCACAGTG
AGAATTACCATACACTAGAAAGAGATTGTTTTTGTTTCTAGGTCTTTGGCAAGATAAATGAATC
TAATACATTTGGTACACTAAATAGATAGCTAACATATAAATTCAGACACACAGGGTATCCATCA
GAAACAATTAATTGGTGGTTACACTCATCAAACAAACCAAAGCAGTGAACTGGGTGCCATACCA
TCCTTGTATTGTGGTTACTGATCATCTCATCCTTATAAGCTGGCTGCTGGCCACTTATCACCAG
CCACCATTAACACAAGATAATTTTTAAGACGAAGAAACCTCTTAAGCATCTCTTAAGCATTACA
ATATGTCAATATGTGATGGAAACATTGTACCGGCAGCAGCAAGAAACTTGCGGTCAGTATACTC
ATTAAACATTGACAGCCACATACCGTGATTCATGATAAAGTTCTTTACCATGAAGGCATCCATC
GACAATTTGTTTAATCCACAGGAGGCTGTCGTTCTCACCATCAATGTACCATCATCCCGTACAG
TAGATGGTGATGAACATGCAAAGCAAACACGTACAGGAGAAAGGAAACCAACCAACACCAAGCA
AAAACCTGATGTGGTTTTTATTTCATGAAGCAACAGTACGTAGTACGTTATCCTGTATCGTGGT
ACACCAGTACAAAGCCTTTTTTATCGATCAAGATCGCTAACAGCACACCACACTCCACACCCTC
TGGTTGCTGCCATCCGCGCGCTGTTTGTGTACTGTAATGTGCAGCACACACATCATATCTCCGC
CACAAGCTTGGGCTCAGCCAGCGCCAGATCGAAGGCGGTGAAGGAGTGAGGAGCCAGCGTGACC
TGCATCTGCTCCGCGGCGTTGCTCAGCTGGCTTTTCACCGGCGCAACCTGCAAGCAGCAAGCTT
TGGGGTTCAGAACAAGCTCCACACGTCGCTCCTTCCATTCAGAAACCAACAAGCTTAGTGCATG
CATGGACCATCGGTACGCATACCTTGTTCGGGTTACTGAAGGAGTTCTCGTCCATGACGTTGCC
AGACGTGAGGACGGTGGCGGTTGATCCCAGCGCGTTGACGCTGGCCCCGAGTCCGCTCGTGGAG
ACCGTGAGGTTAACGGTGTCCGACCCGAAGTTCACGACCTGCACAGCAGAAGCCACTTGAGAAC
GAAACACCTTTAGCCGCGCAGGCTAGGACGGATGCGATGCGACAGACTCTACTACTTGCCTTCA
CTCTCAGGAAGCTATTCTCTGCATCCTGCCACGTGATCGCAGACGCGGCCAGCGAACTCGAGTA
CCGGGAACTGATATTAACCGGATGAATCATGGCGCCGCTTGACTCGCGGAAAATCGTCTGCATC
CAGTAGCTAGGAGTTCCATAGTGTTGCCAGGAGTTGAAGACAATAGCGTCCGGGTTCCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.0422568
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b