Detail information of Os04g0568800_circ_g.3


General Information
CircRNA Name Os04g0568800_circ_g.3
ID in PlantcircBase osa_circ_024938
Alias NA
Organism Oryza sativa
Position chr4: 28588123-28588278  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene Os04g0568800
Parent gene annotation Similar to OSIGBa0139P06.4 protein. (Os04t0568800-01)
Parent gene strand -
Alternative splicing Os04g0568800_circ_ag.1 Os04g0568800_circ_g.2 Os04g0568800_circ_igg.1 Os04g0568800_circ_ig.1
Support reads 2
Tissues seed
Exon boundary   Yes-No
Splicing signals   AA-AC
Number of exons covered Os04t0568800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTCTGGATCCAATGATAGGTCTCGCCTTTAAGGTTGAATTTCTTTGGGGCTTCACATAATTTT
GCGTTGTATCTTTCctccacaagctgcccatcttcgagaatatcgaacacgatgcaaagtaatt
tctcatatagtctaaagttgagatgata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCACAAGCTGCCCATCTTCGAGAATATCGAACACGATGCAAAGTAATTTCTCATATAGTCTA
AAGTTGAGATGATAGCTCTGGATCCAATGATAGGTCTCGCCTTTAAGGTTGAATTTCTTTGGGG
CTTCACATAATTTTGCGTTGTATCTTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.176284188
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017