Plant Circular RNA Database

Detail information of 5_circ_ag.20

			
						 General Information
					
						CircRNA Name
						5_circ_ag.20
					
						ID in PlantcircBase
						ath_circ_041462
					
						Alias
						5:15377956-15381672
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 15377956-15381672  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT5G38410_circ_g.1 AT5G38410_circ_g.2 5_circ_ag.3 5_circ_ag.4 AT5G38410_circ_g.5 5_circ_ag.6 5_circ_ag.7 AT5G38410_circ_g.8 5_circ_ag.9 5_circ_ag.10 AT5G38410_circ_g.11 AT5G38410_circ_g.12 AT5G38410_circ_g.13 5_circ_ag.14 5_circ_ag.15 5_circ_ag.16 5_circ_ag.17 5_circ_ag.18 AT5G38410_circ_g.19 AT5G38410_circ_g.21 AT5G38410_circ_g.22 AT5G38410_circ_g.23 AT5G38410_circ_g.24 AT5G38410_circ_g.25 AT5G38410_circ_g.26 AT5G38410_circ_g.27 5_circ_ag.28 5_circ_ag.29 5_circ_ag.30 5_circ_ag.31 5_circ_ag.32 5_circ_ag.33 5_circ_ag.34 AT5G38410_circ_g.35 AT5G38410_circ_g.36 AT5G38410_circ_g.37 AT5G38410_circ_g.38 AT5G38410_circ_g.39 AT5G38420_circ_g.1 AT5G38420_circ_g.2 AT5G38420_circ_g.3 AT5G38420_circ_g.4 AT5G38420_circ_g.5 AT5G38420_circ_g.6 AT5G38420_circ_g.7 5_circ_ag.8 5_circ_ag.9 AT5G38420_circ_g.10 AT5G38420_circ_g.11 5_circ_ag.12 AT5G38420_circ_g.13 5_circ_ag.14 AT5G38430_circ_g.1 AT5G38430_circ_g.2 AT5G38430_circ_g.3 						
					
						Support reads
						3
					
						Tissues
						leaf
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	5_circ_ag.20
ID in PlantcircBase	ath_circ_041462
Alias	5:15377956-15381672
Organism	Arabidpsis thaliana
Position	chr5: 15377956-15381672 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT5G38410_circ_g.1 AT5G38410_circ_g.2 5_circ_ag.3 5_circ_ag.4 AT5G38410_circ_g.5 5_circ_ag.6 5_circ_ag.7 AT5G38410_circ_g.8 5_circ_ag.9 5_circ_ag.10 AT5G38410_circ_g.11 AT5G38410_circ_g.12 AT5G38410_circ_g.13 5_circ_ag.14 5_circ_ag.15 5_circ_ag.16 5_circ_ag.17 5_circ_ag.18 AT5G38410_circ_g.19 AT5G38410_circ_g.21 AT5G38410_circ_g.22 AT5G38410_circ_g.23 AT5G38410_circ_g.24 AT5G38410_circ_g.25 AT5G38410_circ_g.26 AT5G38410_circ_g.27 5_circ_ag.28 5_circ_ag.29 5_circ_ag.30 5_circ_ag.31 5_circ_ag.32 5_circ_ag.33 5_circ_ag.34 AT5G38410_circ_g.35 AT5G38410_circ_g.36 AT5G38410_circ_g.37 AT5G38410_circ_g.38 AT5G38410_circ_g.39 AT5G38420_circ_g.1 AT5G38420_circ_g.2 AT5G38420_circ_g.3 AT5G38420_circ_g.4 AT5G38420_circ_g.5 AT5G38420_circ_g.6 AT5G38420_circ_g.7 5_circ_ag.8 5_circ_ag.9 AT5G38420_circ_g.10 AT5G38420_circ_g.11 5_circ_ag.12 AT5G38420_circ_g.13 5_circ_ag.14 AT5G38430_circ_g.1 AT5G38430_circ_g.2 AT5G38430_circ_g.3
Support reads	3
Tissues	leaf
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGTATATTACCTCCAACTCGAATTCAACACAAGGAATCCACTTGTTGCGGAGAAGGTAGTCAAC
TTCCTTAGCCAATTCAACGTCACTAAGGTCAGGGAGgtagtcaacttccttagccaattcgacg
tcactaaggtcagggaggtaagatagagtctcaaacttcttctttccaattggtggccacacct
ataatccc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTAGTCAACTTCCTTAGCCAATTCGACGTCACTAAGGTCAGGGAGGTAAGATAGAGTCTCAAAC
TTCTTCTTTCCAATTGGTGGCCACACCTATAATCCCCAAATCCAATTCCAAATTAATATATCCT
ATGTTTTGTTTTATTGCACATGACAAAAGACAGTTTTTATTGATGATATTACCTTCATGCAGCT
AACTCTTCCCCCGTTGCTTGCGATGGAAGTGATGTCCTTGTTGGTCTTGCGGGTGACCGGGAAT
GCAGCGGATGACTTCAAGCCGGTGAATGGAGCGACCATGGTGGCCTGAGCCGGGGATGTAACCA
CAGCGGCGGAGGAGAGCATAGAGGAAGCCATTACTACTTCTTGTTGTTTCTCTTCTTCTTTTGC
TCGTTTACTTACTGACTTGTTTTCCTACTGGTGTTGTCATCTTTATATAATGAGAACCCCCTAA
AGGCGAAAAGCCCTCATGATCAAAGGGTCCATGATTCATGATAACGTCGTTTACTGCCACAGGA
TTAAGGAAAGGTGTTGACACCCTTATCGGTACGCACCACTAGGATAAGGCCACGTGGCAGAAAA
CTCCATTATCTTATCTTTTCTCTTGTGGGGGAAATGAAGTGAATGTGCGGTTACTGGTCTCCAC
TTGATCGGTTGCTTTTGGCTCCTTTCGTTTGGGAGAAAAGAAACCAGACGCATTACCTTAAATT
TAATGCTTTTGGTCTTTTGGACCTCTTATTTACCATGTATGATTTAATTTGGCTTAACACTTTC
TTTGGAAATAAGGTCGCATTAAAAAATAGTTATAACAAAATTATTTAAATTTGATATTTACATA
AATATATTGTATGATATTTATCCGGACAAAAAAAAAAGCTTTAACCATCTCCAATATTTGTTTC
TATTATTTTCTTTCTGAATATAGAGGAAAAAATATAATAGAGATTTATATTTTAACTTCAATGG
TTCCTCAAAAATTCGTTAGAAAAAATAAATAAGAGAAAAAATAAAAATCTCTATTTTTTGCTTT
AGAAAAAAAATTAGAAATTTCTATTTTACAAATGAAAATAGAGATGAGTTAGAGTTAAATAAAT
ACAAAAATAGAGTATATAAATAAAAATAGAGATAGATTCGAGATGCTCTTAAAAATATTCATTA
CTCTTTCCGTTTTATTAATATCAATTGTTAAGATTTTTCAGGCAGACTTATAAATAAGATTCCA
TTTCAGACTAATGGAAGTAAACCTATCAAAAGAATTCTAACGTGCTGTAGAGAGACTCCTTCGT
CATCGTCCCTTTTGTGAAAGAGTAAATTAAAGAATCCATAATGAGCATAGTGTAAGAAGAACCA
TTTATCTATTAGATATATTCTAGTACTGGTAGACTGTCGATTCTGGATACATCCTGAAAATCAT
TTACCACAATAAATTGTCGATAATCTTTTTGTTGGAAAAGTTATATATTATCTTCAAATGATAA
TATATTAGTCGACAAAAGAAAAGCGAGACAAAATTTGAATACATTGATTTCGGTTAATTCAATA
CTTTCACTTCATTTTTAGCAAATAGTACTTTTATTTCTGATTTTTATGTGGCTAGGATAAAAGC
AAAACCTTACTGGTTGGAGAGAGTAAATATTTGAGTCGATACTAACAACAACTACATCATGCAA
GATATGTTTGTGGGACAAAGAGACCGAGCGAACAAACGAAACGGCAAAACCATCATCTACATGT
ATCAAGTGCGCGGTAAACCCCTCATGGAAGAATTTCCAAGAAAACCTCCCAAAGTCCATGGTAT
CTTCTATATGAGGTAATGCACGCTGCCTCTAGATCAACAAGTAATATCAGCTCACGATTATCTT
GCGACTCTGATCACATCACAATAACAATGGGGAACCCACATACGCAACCGTTCTCCTTGGAGTA
CCATGCCATTGCACTTACGGCCCCCTCAAGCACAAATATGGCACCTCAAGCTGATTTCCACCAT
GCAAACTTGAGTATGTAATCAAAGGTGTAGAACGGAGTCAAGAACTCATCTTAAAGTCACATAA
AACTATGGTCATGCACTCATGGATCACGACTACTACCTTCAGGCTCACAAATTAATGCCCCCTT
TTCAATCATATATATGAGAAGAAACGTGTACAAAGTACACATTAACTGGTCACGAAAAAACTTT
CGTGTAGGGAAAAGGATCACAAGGTCCACTCCACTCCGCACCTCAGCTAAATAAATCATTTTTC
GAAAGTGAGATAGTCTTAACTCTTAAGTCTTAACCCATCCATCTAAGTTACTAGTTTCTGTCTT
TTATAAGTCATTTTGTTTCTTTTTCTTGGATTTTAATTGAAGCCAAAATGTGTGAATTAAATCC
GGGAGATGGAAAAAATGTTCGATAATTTGAATTATTATTTTTATATGTATTTTGTATTTGAATC
ATGAATTTTTTATATTTCGTTTGCATAGAAGAATCCAAAAACATATGATTTTTTGTCAAAACAA
AAACTTAAAACCAAACATATAGTAGATGCGACGTTTTCATTATCATTTGGAATCTAGTTTTATT
TAGAACTTTTTGGGAACGTTAACTACTTTTCCTTCTAAATAACTGTTTCAGCTTTTAATGCATA
ACCAATGATCAAATTTAACGTAAACAAAATTTCCAAAATTTAGTAACTTCATGCTTGACAAATT
TCAGTCTTTGTCGATCCTTGCTTTATGTAATGCTATTTCTTGACTTAATATCCCACTTAGGGGT
TTGGAATACATGTTTTATGTTTATAATTTTAAAAGATGCATTTGAATTTTCTGTATATACTACC
TTTTCCAAATCTCCAATGGCTATGTCATCTGAAAAATGGTTACACTCCCTTACATAAACTTTTC
TCTAAATATCGAGGTTTGATTGATTGCTTTCATGTGCAAAATTTCTTAAAACAATGTAGCAAGT
TTTTCTTTTTTTATTAGAGTTTATTGGTTAGTCTAGGGAGTCAAAAGCAAGAATTATGAGGATA
ATTTAAAGGAGCCACAATGTTGTTTAAAGGAGCTAAACGAAAAATAAGATTTCAAAGATTTAAG
GGCAAAAATGAAATGAAATGATAACTATAATTATAGAGAAACTGATAGGAATAACATTTTCACT
TTCAAACAATAGTTCCTCAACTGTTAAGTCGGCAAATAATTTCTTAAATTTGCATTGACCACAT
AGAAATGGGTTCCAGAATAATCAACGCTGAATATTCCAGAAAGGGGATTAAGCTTCGGTGAAGC
TTGGGGGCTTGTAGGCAATGAAACTGATGCATTGGACTTGACGGGTGTTGTCGAATCCGATGAT
CCTAATGAAGGCGCCAGGGTACTCCTTCTTGCATTCTTCAACTTCCTTCAACACTTGAGCGGAG
TCGGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTATCGTCCATCATAGTATCCGGGAG
TGTTTCCGTGCTCACGGTACACAAATCCGTGCTATATATAAAGAAAACCATTCAATACAATTGA
TATATATATTGGTGATAGTCTATTTCGGTTATCCACTTAAGTTTCTAGCAATGAAGAAGAAGAA
TAAAGGATGCTTAGAGACAAAGGAAAAGTTCAGTGTATATTACCTCCAACTCGAATTCAACACA
AGGAATCCACTTGTTGCGGAGAAGGTAGTCAACTTCCTTAGCCAATTCAACGTCACTAAGGTCA
GGGAG
						
					

			
		

Sequences
Splice junction sequence	TGTATATTACCTCCAACTCGAATTCAACACAAGGAATCCACTTGTTGCGGAGAAGGTAGTCAAC TTCCTTAGCCAATTCAACGTCACTAAGGTCAGGGAGgtagtcaacttccttagccaattcgacg tcactaaggtcagggaggtaagatagagtctcaaacttcttctttccaattggtggccacacct ataatccc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTAGTCAACTTCCTTAGCCAATTCGACGTCACTAAGGTCAGGGAGGTAAGATAGAGTCTCAAAC TTCTTCTTTCCAATTGGTGGCCACACCTATAATCCCCAAATCCAATTCCAAATTAATATATCCT ATGTTTTGTTTTATTGCACATGACAAAAGACAGTTTTTATTGATGATATTACCTTCATGCAGCT AACTCTTCCCCCGTTGCTTGCGATGGAAGTGATGTCCTTGTTGGTCTTGCGGGTGACCGGGAAT GCAGCGGATGACTTCAAGCCGGTGAATGGAGCGACCATGGTGGCCTGAGCCGGGGATGTAACCA CAGCGGCGGAGGAGAGCATAGAGGAAGCCATTACTACTTCTTGTTGTTTCTCTTCTTCTTTTGC TCGTTTACTTACTGACTTGTTTTCCTACTGGTGTTGTCATCTTTATATAATGAGAACCCCCTAA AGGCGAAAAGCCCTCATGATCAAAGGGTCCATGATTCATGATAACGTCGTTTACTGCCACAGGA TTAAGGAAAGGTGTTGACACCCTTATCGGTACGCACCACTAGGATAAGGCCACGTGGCAGAAAA CTCCATTATCTTATCTTTTCTCTTGTGGGGGAAATGAAGTGAATGTGCGGTTACTGGTCTCCAC TTGATCGGTTGCTTTTGGCTCCTTTCGTTTGGGAGAAAAGAAACCAGACGCATTACCTTAAATT TAATGCTTTTGGTCTTTTGGACCTCTTATTTACCATGTATGATTTAATTTGGCTTAACACTTTC TTTGGAAATAAGGTCGCATTAAAAAATAGTTATAACAAAATTATTTAAATTTGATATTTACATA AATATATTGTATGATATTTATCCGGACAAAAAAAAAAGCTTTAACCATCTCCAATATTTGTTTC TATTATTTTCTTTCTGAATATAGAGGAAAAAATATAATAGAGATTTATATTTTAACTTCAATGG TTCCTCAAAAATTCGTTAGAAAAAATAAATAAGAGAAAAAATAAAAATCTCTATTTTTTGCTTT AGAAAAAAAATTAGAAATTTCTATTTTACAAATGAAAATAGAGATGAGTTAGAGTTAAATAAAT ACAAAAATAGAGTATATAAATAAAAATAGAGATAGATTCGAGATGCTCTTAAAAATATTCATTA CTCTTTCCGTTTTATTAATATCAATTGTTAAGATTTTTCAGGCAGACTTATAAATAAGATTCCA TTTCAGACTAATGGAAGTAAACCTATCAAAAGAATTCTAACGTGCTGTAGAGAGACTCCTTCGT CATCGTCCCTTTTGTGAAAGAGTAAATTAAAGAATCCATAATGAGCATAGTGTAAGAAGAACCA TTTATCTATTAGATATATTCTAGTACTGGTAGACTGTCGATTCTGGATACATCCTGAAAATCAT TTACCACAATAAATTGTCGATAATCTTTTTGTTGGAAAAGTTATATATTATCTTCAAATGATAA TATATTAGTCGACAAAAGAAAAGCGAGACAAAATTTGAATACATTGATTTCGGTTAATTCAATA CTTTCACTTCATTTTTAGCAAATAGTACTTTTATTTCTGATTTTTATGTGGCTAGGATAAAAGC AAAACCTTACTGGTTGGAGAGAGTAAATATTTGAGTCGATACTAACAACAACTACATCATGCAA GATATGTTTGTGGGACAAAGAGACCGAGCGAACAAACGAAACGGCAAAACCATCATCTACATGT ATCAAGTGCGCGGTAAACCCCTCATGGAAGAATTTCCAAGAAAACCTCCCAAAGTCCATGGTAT CTTCTATATGAGGTAATGCACGCTGCCTCTAGATCAACAAGTAATATCAGCTCACGATTATCTT GCGACTCTGATCACATCACAATAACAATGGGGAACCCACATACGCAACCGTTCTCCTTGGAGTA CCATGCCATTGCACTTACGGCCCCCTCAAGCACAAATATGGCACCTCAAGCTGATTTCCACCAT GCAAACTTGAGTATGTAATCAAAGGTGTAGAACGGAGTCAAGAACTCATCTTAAAGTCACATAA AACTATGGTCATGCACTCATGGATCACGACTACTACCTTCAGGCTCACAAATTAATGCCCCCTT TTCAATCATATATATGAGAAGAAACGTGTACAAAGTACACATTAACTGGTCACGAAAAAACTTT CGTGTAGGGAAAAGGATCACAAGGTCCACTCCACTCCGCACCTCAGCTAAATAAATCATTTTTC GAAAGTGAGATAGTCTTAACTCTTAAGTCTTAACCCATCCATCTAAGTTACTAGTTTCTGTCTT TTATAAGTCATTTTGTTTCTTTTTCTTGGATTTTAATTGAAGCCAAAATGTGTGAATTAAATCC GGGAGATGGAAAAAATGTTCGATAATTTGAATTATTATTTTTATATGTATTTTGTATTTGAATC ATGAATTTTTTATATTTCGTTTGCATAGAAGAATCCAAAAACATATGATTTTTTGTCAAAACAA AAACTTAAAACCAAACATATAGTAGATGCGACGTTTTCATTATCATTTGGAATCTAGTTTTATT TAGAACTTTTTGGGAACGTTAACTACTTTTCCTTCTAAATAACTGTTTCAGCTTTTAATGCATA ACCAATGATCAAATTTAACGTAAACAAAATTTCCAAAATTTAGTAACTTCATGCTTGACAAATT TCAGTCTTTGTCGATCCTTGCTTTATGTAATGCTATTTCTTGACTTAATATCCCACTTAGGGGT TTGGAATACATGTTTTATGTTTATAATTTTAAAAGATGCATTTGAATTTTCTGTATATACTACC TTTTCCAAATCTCCAATGGCTATGTCATCTGAAAAATGGTTACACTCCCTTACATAAACTTTTC TCTAAATATCGAGGTTTGATTGATTGCTTTCATGTGCAAAATTTCTTAAAACAATGTAGCAAGT TTTTCTTTTTTTATTAGAGTTTATTGGTTAGTCTAGGGAGTCAAAAGCAAGAATTATGAGGATA ATTTAAAGGAGCCACAATGTTGTTTAAAGGAGCTAAACGAAAAATAAGATTTCAAAGATTTAAG GGCAAAAATGAAATGAAATGATAACTATAATTATAGAGAAACTGATAGGAATAACATTTTCACT TTCAAACAATAGTTCCTCAACTGTTAAGTCGGCAAATAATTTCTTAAATTTGCATTGACCACAT AGAAATGGGTTCCAGAATAATCAACGCTGAATATTCCAGAAAGGGGATTAAGCTTCGGTGAAGC TTGGGGGCTTGTAGGCAATGAAACTGATGCATTGGACTTGACGGGTGTTGTCGAATCCGATGAT CCTAATGAAGGCGCCAGGGTACTCCTTCTTGCATTCTTCAACTTCCTTCAACACTTGAGCGGAG TCGGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTATCGTCCATCATAGTATCCGGGAG TGTTTCCGTGCTCACGGTACACAAATCCGTGCTATATATAAAGAAAACCATTCAATACAATTGA TATATATATTGGTGATAGTCTATTTCGGTTATCCACTTAAGTTTCTAGCAATGAAGAAGAAGAA TAAAGGATGCTTAGAGACAAAGGAAAAGTTCAGTGTATATTACCTCCAACTCGAATTCAACACA AGGAATCCACTTGTTGCGGAGAAGGTAGTCAACTTCCTTAGCCAATTCAACGTCACTAAGGTCA GGGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.239769815

Conservation Information
Conserved circRNAs	NA
PMCS	0.239769815

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 5_circ_ag.20

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