Detail information of 5_circ_ag.3


General Information
CircRNA Name 5_circ_ag.3
ID in PlantcircBase ath_circ_041445
Alias NA
Organism Arabidpsis thaliana
Position chr5: 15377431-15381263  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method circRNA_finder, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G38410_circ_g.1 AT5G38410_circ_g.2 5_circ_ag.4 AT5G38410_circ_g.5 5_circ_ag.6 5_circ_ag.7 AT5G38410_circ_g.8 5_circ_ag.9 5_circ_ag.10 AT5G38410_circ_g.11 AT5G38410_circ_g.12 AT5G38410_circ_g.13 5_circ_ag.14 5_circ_ag.15 5_circ_ag.16 5_circ_ag.17 5_circ_ag.18 AT5G38410_circ_g.19 5_circ_ag.20 AT5G38410_circ_g.21 AT5G38410_circ_g.22 AT5G38410_circ_g.23 AT5G38410_circ_g.24 AT5G38410_circ_g.25 AT5G38410_circ_g.26 AT5G38410_circ_g.27 5_circ_ag.28 5_circ_ag.29 5_circ_ag.30 5_circ_ag.31 5_circ_ag.32 5_circ_ag.33 5_circ_ag.34 AT5G38410_circ_g.35 AT5G38410_circ_g.36 AT5G38410_circ_g.37 AT5G38410_circ_g.38 AT5G38410_circ_g.39 AT5G38420_circ_g.1 AT5G38420_circ_g.2 AT5G38420_circ_g.3 AT5G38420_circ_g.4 AT5G38420_circ_g.5 AT5G38420_circ_g.6 AT5G38420_circ_g.7 5_circ_ag.8 5_circ_ag.9 AT5G38420_circ_g.10 AT5G38420_circ_g.11 5_circ_ag.12 AT5G38420_circ_g.13 5_circ_ag.14 AT5G38430_circ_g.1 AT5G38430_circ_g.2 AT5G38430_circ_g.3
Support reads 4
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTCCAGAATAATCAACGCTGAATATTCCAGAAAGGGGATTAAGCTTCGGTGAAGCTTGGGGGC
TTGTAGGCAATGAAACTGATGCATTGGACTTGACGGagaaaaagaacacagacaataggaaatg
aaatgagcagagataattcataagaatgttttagaaaagaaattaagcttcggtgaagcttggg
ggcttgta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGAAAAAGAACACAGACAATAGGAAATGAAATGAGCAGAGATAATTCATAAGAATGTTTTAGAA
AAGAAATTAAGCTTCGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGGACTTGA
CGGGTGTTGTCGAATCCGATGATCCTAATGAAGGCGCCCGGGTACTCCTTCTTGCATTCTTCAA
CTTCCTTCAACACTTGAGCGGAGTCGGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTA
CCGTCCATCGTAGTATCCGGGAGTGTTTCCGTGCTCACGGTACACAAATCCGTGCTATAAACAC
ATAAGAAAACCATTCAATACAATTGATATTGGAGGATATGCACAAGGTGATATAGTCTATTTCG
GTTCTACAAAATCCGGTTATAGGCTAATATTTCTAGCAATGAAAACGAATAAATAATAATGATT
AGTAGACAAAAGAAAACTTTTGTGTTTATTACCTCTAACTCGAATTCAACACAAGGAATCCACT
TGTTGCGGAGAAGGTAGTCAACTTCCTTAGCCAATTCGACGTCACTAAGGTCAGGGAGGTAAGA
TAGAGTCTCAAACTTCTTCTTTCCAATTGGTGGCCACACCTATAATCCCCAAATCCAATTCCAA
ATTAATATATCCTATGTTTTGTTTTATTGCACATGACAAAAGACAGTTTTTATTGATGATATTA
CCTTCATGCAGCTAACTCTTCCCCCGTTGCTTGCGATGGAAGTGATGTCCTTGTTGGTCTTGCG
GGTGACCGGGAATGCAGCGGATGACTTCAAGCCGGTGAATGGAGCGACCATGGTGGCCTGAGCC
GGGGATGTAACCACAGCGGCGGAGGAGAGCATAGAGGAAGCCATTACTACTTCTTGTTGTTTCT
CTTCTTCTTTTGCTCGTTTACTTACTGACTTGTTTTCCTACTGGTGTTGTCATCTTTATATAAT
GAGAACCCCCTAAAGGCGAAAAGCCCTCATGATCAAAGGGTCCATGATTCATGATAACGTCGTT
TACTGCCACAGGATTAAGGAAAGGTGTTGACACCCTTATCGGTACGCACCACTAGGATAAGGCC
ACGTGGCAGAAAACTCCATTATCTTATCTTTTCTCTTGTGGGGGAAATGAAGTGAATGTGCGGT
TACTGGTCTCCACTTGATCGGTTGCTTTTGGCTCCTTTCGTTTGGGAGAAAAGAAACCAGACGC
ATTACCTTAAATTTAATGCTTTTGGTCTTTTGGACCTCTTATTTACCATGTATGATTTAATTTG
GCTTAACACTTTCTTTGGAAATAAGGTCGCATTAAAAAATAGTTATAACAAAATTATTTAAATT
TGATATTTACATAAATATATTGTATGATATTTATCCGGACAAAAAAAAAAGCTTTAACCATCTC
CAATATTTGTTTCTATTATTTTCTTTCTGAATATAGAGGAAAAAATATAATAGAGATTTATATT
TTAACTTCAATGGTTCCTCAAAAATTCGTTAGAAAAAATAAATAAGAGAAAAAATAAAAATCTC
TATTTTTTGCTTTAGAAAAAAAATTAGAAATTTCTATTTTACAAATGAAAATAGAGATGAGTTA
GAGTTAAATAAATACAAAAATAGAGTATATAAATAAAAATAGAGATAGATTCGAGATGCTCTTA
AAAATATTCATTACTCTTTCCGTTTTATTAATATCAATTGTTAAGATTTTTCAGGCAGACTTAT
AAATAAGATTCCATTTCAGACTAATGGAAGTAAACCTATCAAAAGAATTCTAACGTGCTGTAGA
GAGACTCCTTCGTCATCGTCCCTTTTGTGAAAGAGTAAATTAAAGAATCCATAATGAGCATAGT
GTAAGAAGAACCATTTATCTATTAGATATATTCTAGTACTGGTAGACTGTCGATTCTGGATACA
TCCTGAAAATCATTTACCACAATAAATTGTCGATAATCTTTTTGTTGGAAAAGTTATATATTAT
CTTCAAATGATAATATATTAGTCGACAAAAGAAAAGCGAGACAAAATTTGAATACATTGATTTC
GGTTAATTCAATACTTTCACTTCATTTTTAGCAAATAGTACTTTTATTTCTGATTTTTATGTGG
CTAGGATAAAAGCAAAACCTTACTGGTTGGAGAGAGTAAATATTTGAGTCGATACTAACAACAA
CTACATCATGCAAGATATGTTTGTGGGACAAAGAGACCGAGCGAACAAACGAAACGGCAAAACC
ATCATCTACATGTATCAAGTGCGCGGTAAACCCCTCATGGAAGAATTTCCAAGAAAACCTCCCA
AAGTCCATGGTATCTTCTATATGAGGTAATGCACGCTGCCTCTAGATCAACAAGTAATATCAGC
TCACGATTATCTTGCGACTCTGATCACATCACAATAACAATGGGGAACCCACATACGCAACCGT
TCTCCTTGGAGTACCATGCCATTGCACTTACGGCCCCCTCAAGCACAAATATGGCACCTCAAGC
TGATTTCCACCATGCAAACTTGAGTATGTAATCAAAGGTGTAGAACGGAGTCAAGAACTCATCT
TAAAGTCACATAAAACTATGGTCATGCACTCATGGATCACGACTACTACCTTCAGGCTCACAAA
TTAATGCCCCCTTTTCAATCATATATATGAGAAGAAACGTGTACAAAGTACACATTAACTGGTC
ACGAAAAAACTTTCGTGTAGGGAAAAGGATCACAAGGTCCACTCCACTCCGCACCTCAGCTAAA
TAAATCATTTTTCGAAAGTGAGATAGTCTTAACTCTTAAGTCTTAACCCATCCATCTAAGTTAC
TAGTTTCTGTCTTTTATAAGTCATTTTGTTTCTTTTTCTTGGATTTTAATTGAAGCCAAAATGT
GTGAATTAAATCCGGGAGATGGAAAAAATGTTCGATAATTTGAATTATTATTTTTATATGTATT
TTGTATTTGAATCATGAATTTTTTATATTTCGTTTGCATAGAAGAATCCAAAAACATATGATTT
TTTGTCAAAACAAAAACTTAAAACCAAACATATAGTAGATGCGACGTTTTCATTATCATTTGGA
ATCTAGTTTTATTTAGAACTTTTTGGGAACGTTAACTACTTTTCCTTCTAAATAACTGTTTCAG
CTTTTAATGCATAACCAATGATCAAATTTAACGTAAACAAAATTTCCAAAATTTAGTAACTTCA
TGCTTGACAAATTTCAGTCTTTGTCGATCCTTGCTTTATGTAATGCTATTTCTTGACTTAATAT
CCCACTTAGGGGTTTGGAATACATGTTTTATGTTTATAATTTTAAAAGATGCATTTGAATTTTC
TGTATATACTACCTTTTCCAAATCTCCAATGGCTATGTCATCTGAAAAATGGTTACACTCCCTT
ACATAAACTTTTCTCTAAATATCGAGGTTTGATTGATTGCTTTCATGTGCAAAATTTCTTAAAA
CAATGTAGCAAGTTTTTCTTTTTTTATTAGAGTTTATTGGTTAGTCTAGGGAGTCAAAAGCAAG
AATTATGAGGATAATTTAAAGGAGCCACAATGTTGTTTAAAGGAGCTAAACGAAAAATAAGATT
TCAAAGATTTAAGGGCAAAAATGAAATGAAATGATAACTATAATTATAGAGAAACTGATAGGAA
TAACATTTTCACTTTCAAACAATAGTTCCTCAACTGTTAAGTCGGCAAATAATTTCTTAAATTT
GCATTGACCACATAGAAATGGGTTCCAGAATAATCAACGCTGAATATTCCAGAAAGGGGATTAA
GCTTCGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGGACTTGACGG
Conservation Information
Conserved circRNAs NA
PMCS 0.234770935
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017