Detail information of AT3G14990_circ_g.8


General Information
CircRNA Name AT3G14990_circ_g.8
ID in PlantcircBase ath_circ_021857
Alias NA
Organism Arabidpsis thaliana
Position chr3: 5048631-5048711  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT3G14990
Parent gene annotation Protein DJ-1 homolog A
Parent gene strand +
Alternative splicing AT3G14990_circ_g.1 AT3G14990_circ_g.2 AT3G14990_circ_g.3 AT3G14990_circ_g.4 AT3G14990_circ_g.5 AT3G14990_circ_g.6 AT3G14990_circ_g.7
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G14990.3:1
AT3G14990.1:1
AT3G14990.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTAACCAAACAAACTGGTCATTTGAAGATACACCACAGctgcttcgtcctaaccctggtgag
gagtttacttttactga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTTCGTCCTAACCCTGGTGAGGAGTTTACTTTTACTGAGCTTAACCAAACAAACTGGTCAT
TTGAAGATACACCACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.201643932
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017