Detail information of Os11g0707000_circ_ag.3


General Information
CircRNA Name Os11g0707000_circ_ag.3
ID in PlantcircBase osa_circ_043512
Alias NA
Organism Oryza sativa
Position chr11: 28935254-28939076  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRI-long
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0707000_circ_g.11 Os11g0707000_circ_g.12 Os11g0707000_circ_g.13 Os11g0707000_circ_g.14 Os11g0707000_circ_g.15 Os11g0707000_circ_g.16 Os11g0707000_circ_g.17 Os11g0707000_circ_g.18 Os11g0707000_circ_g.19 Os11g0707000_circ_g.20 Os11g0707000_circ_g.21 Os11g0707000_circ_g.22 Os11g0707000_circ_g.23 Os11g0707000_circ_g.24 Os11g0707000_circ_g.25 Os11g0707000_circ_g.26 Os11g0707000_circ_g.27 Os11g0707000_circ_g.28 Os11g0707000_circ_g.29 Os11g0707000_circ_ag.1 Os11g0707000_circ_ag.2 Os11g0707000_circ_g.4 Os11g0707000_circ_g.5 Os11g0707000_circ_g.6 Os11g0707000_circ_ag.7 Os11g0707000_circ_ag.8 Os11g0707000_circ_g.9 Os11g0707000_circ_g.10 Os11g0707000_circ_g.11 Os11g0707000_circ_g.12 Os11g0707000_circ_g.13 Os11g0707000_circ_g.14
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTAATTAATTAATCAAAATGTGCATGCAACGCAGCATTATATTTCAAGCATTATTGAATGTG
CTTAATTACGTACGTTCTGAGACCCTGGCTGAGGTAgagctcacactggaaggattttccctga
cccttgcctccccagatacccaggatgagtgggaccttgatgttggggagggtcatgaagttct
tggagatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 192
Transcript exons: 28935254-28935422,28939054-28939076
GAGCTCACACTGGAAGGATTTTCCCTGACCCTTGCCTCCCCAGATACCCAGGATGAGTGGGACC
TTGATGTTGGGGAGGGTCATGAAGTTCTTGGAGATGTGGACGACGAGCTTGTCCATGAAAGCAG
GGGCGATGTAGAAGCCTCCCATGGTGTTGTCGAAGTCGTACGTTCTGAGACCCTGGCTGAGGTA

Genomic sequence GAGCTCACACTGGAAGGATTTTCCCTGACCCTTGCCTCCCCAGATACCCAGGATGAGTGGGACC
TTGATGTTGGGGAGGGTCATGAAGTTCTTGGAGATGTGGACGACGAGCTTGTCCATGAAAGCAG
GGGCGATGTAGAAGCCTCCCATGGTGTTGTCGAAGTCGTACCTGGAGGTATGTATGCATATATC
CAGTCAGTCAATTCGATTCAATTCAGCATATATATGAATATGATGAATAAAATCGATTGGTGTG
GTGTACAAATTAGATTTAGTACGTACGTTCTGAGACCCTGGCTGAGGTACTCGTAGGAGCTGAG
GACGGCCTCGTGGGTGCCATCACCCGTGGGAGCCTGGAAAAGGGAGTCGACGAAACCCTTCCCC
CTGGTGATGTCCTGCTGGTCATCGGAGATGTCGTAGGCGAGACCCTTCCACCTGTCCTGGTCGG
TCTGCTTGCCCTCGTCCAGCTCCTTGGCCATCACCTTGAACCTGTTGATGTTGGAGCTCTTGCC
ATGGTAGTTCACCGCCGATGTCACCTGCTTCTTCAGCTTCTTCCCCAGGAAGTTGGTCGGAGTG
GACGCCTGCACATCCATTAATCTCGCAAGTAAGTATCCTCATTTAATTTGCAGCAAAAACATGT
ACTTATCAAGCTAGCTAGCTAGCTGCGTATGTATGTGTACCGGAGCTCCAACGGTGGAGGAGAA
GGCAGCAGCCATCTTAATTTGCTGAAAGTCGATGATTGTAGAGGATCACTGATGATGGCCGGCC
GCTGCTGCTCAAAGTGTAGAGGCCGAGCTGCGGTAGGCCTTAAATAATACAATAGAATTGGACG
TCGCCATGGAAGTTGGAGGCTGTGAGAGGCACACACTCGTCCCTGTGGATCAGCTTCCAGATCC
TCCACAGGCCACACGCTGAAGATTGGGTTCTGCACACGTGGCGCAATCTCGGCCGGCCGATCCA
CAGCATAGCATGACTTGGACCTGGATCGGAGTCTGTGAGCGAGTTAGGAGTATATTGTATTAGT
GTAGGTAGGAAGGATCTCTTGGCTTCAGTTCCTTGACCTTTCCTCACCACAGAATTCACCCATT
TCTGATCAACTCTTTCTCTCTGTTTTTTCTTTTCTTTCCTTGCCTCACATTCGTCTCCCGGCCG
GCAGCTAGCGACCAGTTGCTTCATCAGCTCAGCTACTACATAACCTCTTCATTTTGCATCACCA
CAGAAAAGCCTTTTGCTGCCTCTCGTTGCCCGGCTTCTTGGATGAGGCATGGCATGCAAATTGT
ATTCTAGTTGGACTACCACAAATATTTTGCTCTGCTACCTGCACATATTCTGCTTTCTCGATAA
CCATCAGGCTAGGACTGTCATTTGGCACCACACAAACTTCTCTTAACATACAACATAAGCATTG
TACGTTTTTTCCCCTTTGATGGTTTCCGTTACCACAAAAATACAAAAATTCTAATTTTGCACTG
CTGTTGATATTGTTTTTTGGTGAAGCATCAATCGGAGGCAGCTAAATCTGCAGCAGTGCCTTAA
GATGAATTTATTTGTGGTTCATAGCTTTCGTTCCTCCTAAGCCTCTATATTGCTTTTCGTAACT
TTTGAAAATTAATTGTTTGCTCATGTCATGTCAGTAGTAATCTTTTATGCAAGTCATGTGAAAT
TTCTCCTAGCTAGCTTGTCCCTACTAAGACGTTTGAGATGGAGGCAAGTGATTGGTAACGACAC
TTGTAAGGTCGAGTCTCCAGTACATTGGAAAATAACAGTCATCTCACTAGGCAAGTACTAGCGC
ACATATTGGAATTGGATAACATTCCCCAACTTGTGCATCATTACAGATTTACAGTGATACGCTA
ATTGTTATCGTGCAACATGATGAATAGCACAGGAACTTTGATATAGCATGCATCTGTAGTAACA
AATGCAACCCGCAAGTTGAGAATACATCCATATATAGGGAAGTGGATTTGGATCCCTCAAGGAA
ATATTCCCTCGTTGATTGCATGTCACTCAAGTGGTTATGAAAAAAATTGAGAAGATATATTAAC
ATGTGATATATCACTCTACAAACATGCAAATAAAAATTCAACTTCGACATCTCGTAACGAAAAA
AACAAATTTAACTCTGAATATACATTAACTAGCTGTTGTTTAATTTGTATTTTTCATTACAATT
TGTAGAAGTTGAACTTGAACTTGTATATTTGTGGAGTGTTATATCACATGTTAATAGACCTTCT
CAATTTTTTTTCAAATTTTTTTATAATCATTTGAATGACATGCAAATAACTAGGGGATATCCCC
GTATATAGTCAGCATGTGTATATATCAATCAGCGATATGATGGCACATCCACAGTATCCAGAGA
TCGTACGTATCGTTGCATATGCATACAGTACTGCTAGTACACTAGTGGATAATTAATGAACTAT
GTGACAAACGATTGGATTATGTGCAAAAATACTAATAATGTATTAGTATATGACAAGTGTAATT
TCACCACATATCACATACTTCGAGGTATTAAAATTTGTAGTGTAAAATTTTAGTATGTACTATA
CTTTAAAAATTCTCATACGATTAATTTAAATAATACTAGTTAATTTGGGTGCAGTAGTGACAAA
TTAAACGTTCCTCTTTGTTAAGGGTACAGGCTATATAGGGTGCGAAGTACAAGGAAGCATATCG
ATGGTGTTCATATATATATATATATATATATTCATTAATCAAGTGCAAAATTAAGAAGCTGGTG
GTGAATTGGTGATGGATTGAGTTCAGTTGTAGACGCAGCTGCCGTCGTCGCTCCTGGCGGTAGG
GTCGTAGTTGGCGGCGCGTTGGTCGGTGCATCCCGCCGGCACGGGGACGGGCGACTGCTGCTCG
GCCTTGCCGTAGAACTCGCCGGAGTCGTGGTTGGCGTCTCCGAGCGCCGCCTCGCTGAGGTACT
TATCGGCGAGCCGCACCCTCTTGACGTTCTCCTGCTCCCTCACCAGCATGTGCCGGCCCGTACT
CCATCAGCTTGTCGATCGTCATCTTGGGCTGCTCCAACTCGATCCGGCGGAGTTCACCAGCCTC
CTGCCGATGTTCTCCACCCCGATCTCCGCCACCCACCGCCGCACCTCGTCGCCGTACACCCGCG
CCCGCAGCGCCCCGAAGAAGTCGATGGGAACGCGTCGGGGACCTTGTCGCTGCGGAAGATGCCC
CTGCACACGCCAATGCGGTCCTCGCGGGTGGGAGCCCAGTAGAACTTGTCCATGCGCCCGTCGC
GGATGAGCGGGAGAAGTCGTTGCCGGTGACGATGATGGGGACGGGGGTTGTACATCCCTGGGAG
CTGCACGTTGGTGGGGTTGTCCGCGATGTTCATCAGCGTCGCGTTCACCATCTGGTTGTTCACC
GTGTACTGCGTCGTGCCGCCCCGCGTCCAGGTCGTTGATGAACAGCACGCACATCTTCCCCTTG
TTGATCATGTCCGCCGCCTCGCGGTACCGCTGCCGGATCAGCTTCGCGGGCTCTCCGGCGCTCA
TCATGATGAGGCTGCATGCATGCAGTTGTACTACTATTACAACACACGCAGCATGCAATGCAGT
TGTACTTCCTACTCTCACTTGATCCCCATCTTGGCGAAGACGAGATCACACTGGAACGACTTGC
CCTGGATGTTGGGCAGCTTCATCAAGTTCTTGGAGATGTGTCCATGGTGTTGTCCAGGTTGTAC
CTGCAGCAATTAATTAATTAATTAATCAAAATGTGCATGCAACGCAGCATTATATTTCAAGCAT
TATTGAATGTGCTTAATTACGTACGTTCTGAGACCCTGGCTGAGGTA
Conservation Information
Conserved circRNAs NA
PMCS 0.138951966
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study