Detail information of Os03g0210400_circ_g.2


General Information
CircRNA Name Os03g0210400_circ_g.2
ID in PlantcircBase osa_circ_018454
Alias NA
Organism Oryza sativa
Position chr3: 5762576-5766700  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0210400
Parent gene annotation RNA-processing protein, HAT helix domain containing protein. (Os
03t0210400-01)
Parent gene strand -
Alternative splicing Os03g0210450_circ_g.1 Os03g0210450_circ_g.2 Os03g0210450_circ_g.3 Os03g0210450_circ_g.4 Os03g0210450_circ_g.5 Os03g0210400_circ_g.1 Os03g0210400_circ_g.3 Os03g0210400_circ_g.4 Os03g0210400_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0210400-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTTCTCTGTCTCATCAATAAGCGCAGTCCAAGCATTGAAGTCTAAGCAATTCGCTGTAACGG
CATTCCACAACCTTGCTTCTTCTGCTGAAAGCACAGctcaataattgattttgtcaaatcgcat
tgttcgagaaaaccagttagcgtctcctttgccttctcgatgtcaccgatggcctgcacatttt
taagaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAATAATTGATTTTGTCAAATCGCATTGTTCGAGAAAACCAGTTAGCGTCTCCTTTGCCTTC
TCGATGTCACCGATGGCCTGCACATTTTTAAGAAATACATCAAATTCTGCAAAAAGAGCTAGTG
GAGACAAAAAGGAAGGGGAAAATAATTGTAATCAGATCCAATCAGCCACTTAACGAGTTAACAT
GACACAACTGGTCATCCCGTAGGCTCAAACGTTTAATATATATACAACACTTCAAACATAAATA
ATGAAGAATGCCAAATGACAACATTCTATTTAATGCTGTTTTGAGTGTTTTCTTATCAGCTAAT
CATGCATGTTCCATTAACAGTGTCAGATGACACAAAAGAGACATGTGCAATATTTCTGTTATCT
CAAAAGTAGCAATAAAGATACACTTACCAAAGATAAGAATCGTGAGTACTGAATCAGCAAAGTA
GGCAAAATCTGGCTCCGATCCTTTTCCTTTTCAGCGGCAATGGCCTTCTCATAAATTGAGCAAG
CAGATTCTTTATCTCCCTGCAAGATGAAAAAGATAAATGAACCTTTTAACACAAAAAAAAAGGA
AACAATAATGCCGTAGTTTGATTCGGGAGATACCAATCGGTGCTCCATATTAGAATGCTTAACA
ATGGCTTCTAAAAGGCCAGGGTACAGATCAGAATAAAGATGCTGGTATTCTACACGTGCTCCAG
AGACATCTCCACTAAGCTCCTTGAATCTTGCACTGAACAGATGGATCTCTGCCTGCTTCTGTTA
AAGAATAGAAGAAACAGTGTTATTCAGTAAATCTAAAACGATTGCAGTATAAACTACATGCATT
ACGTTGCAATAAATAAAATACTGATTGTCGATACAGTCTCAGGCCCCAATCAGATTATCAATGG
CAAATGGTAATCATGACAGACAGATGCTATTAGTTTATTCTTTGTGTTTTCAGCACGTCAATAA
TCAAACAAGGTTTCAGAAGGAGTCTACTGTCTACTCAAATCACAATAACAAAAGCAATTTACAA
GTAAAGGGTAGATATGCGTTAAGCAGCCTGCAAACTAATAATTCAGACCACTTTCTTATATTTC
TTATTTATCTCCATGCAGAGTACCTATATAGAATCAAGAATCACAAGATTTTCATTTCGCAGAT
ACAGAATCTTTGACAGTGAAAGAACACAAGATGAAATGAGAAACAGAACTTTTAGATCAGTTGT
CAGACCTTGCTGATTGATATCGTATGATGATGTTAGTGGCATGTAGATAGAAGGATATACACAA
GATCCATATCAAAAAAGTGTGCAGGAGAAAAAACATAATGGTAAAAGGTAAATTATACTGACTG
TATATGTGATACCTTGACAAAAACATGAGTGGCACGAGCCAGAGCATTGTTTGCTAGTTCTATG
CTTCCTCTAGCTTCCATGCATAGCACATAACGGATCCAAAACTCTGAATAACTAGCACATGCAA
TAACACATCTTTCATACAGCTTGATAACCTGAAAACAAATATTGGGTAACATCAGAAAACTTGA
GCGGAAGTAATAAAGGAAATAAAGGGAATAACAATAAAATATTGACAAAAAAACAGAAGAAGTT
CACACAGGTTACTCCATTAGCTGATTAGGGAGGCCCCTCCATAAGGAGGGACCATCCTTGCCTG
ATAGATAGATGGTTAAGAAGGAGAGCATTAAGCAATTACCTGCATATATGAGATTAAAAATTCA
AACAACTGATATTTGGTAGCACATATCATTAACCCAGAACGGCCACTGACAAATGAAAGTTTGG
AGTACTTAGCCTCATCGAAACCAAACATTATGTCCATGCTCTATCCTCAGTTCAATATGCCATT
ACAAAGGAAGCTTCGTCCAAATACTAGCCGTTAAAGCATATAATGGAGCCAATAAGACTAAAAT
TGTAAGTTACAAGACTCCAGGTACTGCATGAAGTCTACTGAATGAAAAAGTAAAGGACTATTTC
CATTGCAAAAGCATACCTTATTTATGTCTTCTTCTTTCTCAATAAGATCAAGATAGTTGTGCCA
ATTTTCAAGCTCTGGATTGTCAAGGGGCTTGACATGAAAATATGGTCTTCTAATTGCTAGCTCA
AAACCAATAATCTTAGACTCATACTCTTTAGCCTTGTTATACATTTCTTCTCTAACAGAAACGT
ATTTTGCCAGGTTATCTGCCTCTGTTGAACCTGAAATTTCGGGTTGAGCAGACATATCTACATC
ACCAGGTTGTGTCTCTCCATCAAGCGTCTGAGCAGTGTTCTCGGCAGTAACAGAATACATGGCA
GCTTCCTCTGAGGTAAGTATTTCTGATAAACTTCGTGTTGCGGCCAACTCCTTTAGGCTGAGTA
GAAATTAAAACAAATGACCATTAGTACAAGTATAAAATTTACTTCACTATGTTTCATTAAGAAT
ATAACAATTATCATCCAAAATACCACGTTACATTTATATGGCTATTTCTTTTGTTGTAATTGGT
TTATATGACTCTAATTCCTTAATCACCCTGACAATTGATAGACCACTAATCAACGACTTATTCA
TAAAAAGTAATACAATTCAAAAATAAACTGCACAAATACCCAATGATCTTACCAATGGAAATAC
CGATCAAGCTGTGTTATAGGATGCTCCAATATTCTCGTATATATGATGGCTAGATGACTCCATG
CCTGCAGTGATTCTTCGTACTTAATGTACTCATCCCACAAAATATTGGAACGATAGTCTGTTCC
AACATATGCCAAACCCCGTTCGAACAGTCTGTAAAAGACAATGTGAGAAAATTTGTTAATGTAG
AAATAAAATCTTTTACAATGAATGATGGCCGGCTGCTGCACTCAGTGGTATCTACATCCTACAT
TTACATCCACGAAGGATCATATCATTCTTGACAGAAAAGTCCCAAGTTTACTTATAAATTGCTA
GTATATTCGAAGGCACATATATCAAACATTCCAACATAGATTTCCTATAGGGTGAGTTTAGTTC
TCTACCCTCCCAAAATTTGGTACTGCCAAAACCTAGGCAAGAATTGGTGCAGCCAAATTTTGGT
GGGTAGAGTTTTGCTACAACTGTGTCCTTTGGTTTGCTACTAATTAGGAGCCAAATTTTGGTAG
GGTTGCCAAAATTGGCTTCAATTCAAACAAGTGCAATACTATTTAAGTTGGCAAAAGACTTGGT
AGGGAAGATTTTTGGCAGCAATCCAAAAAATGGACATGAATCACACACAGCTATCAGCTACAAG
AGGAAACAAATAGGAATAGATAGAGTGTGATTGCTACCTTCTGATGATATCTGGGTCTTCATAT
GTAGAAATTGCAAACTGACAATAGTTATACCAAATGTCCACGGAATAAGTAACAGCAAGAACTG
CACGTTCATAAACCTCTATAACTTTTGTGACACCATCAAGACGTGCTTCATGATCTGCATATTT
CTTCCAGTATCCAAAGCAGAGAGGGAACTCCGCAAGGAATGCATCATACACTTTTCTTAGTTTC
AAGATATTGCTCTGGGCAAGAATAGATAAAAAAAATTATTAGCACAAAAAGAACTACTCTTGCC
ATATAATTCCGACTTAATTTACTTAACTAAAACATAAATGAACAAATATTTACAAAAACTATCA
TAGGACAAATGATAACAATTCATTTTTTTCCCTGAGAAACTTGGATAAGAGCTCTACCATTTCA
ATAAGAGAGATAGGAAAGTAAAGTTACAAATGACAGCTCAACATGGCAAACTATGCCAAAACAC
ATCAAGCATTGTGAACCTATATAAACATAGATTACCTATATGAGATGATGCAAATCCACAAGGC
AGATTCATGGAACCAGATTCTCCAAGATATAGATGCATATAATCATAAGGTAAATCTATCATTC
ATGTGAATGAATGAGAAAATGAGAAGTTACAAATTTAGAGTGCCTATGCATACAACAAGTTGCA
GAATAAAGTAATAACAGATTTTATGGTGACGGCAACAGTAAAAACATTACCTCAGCAGTTTTCT
CTGTCTCATCAATAAGCGCAGTCCAAGCATTGAAGTCTAAGCAATTCGCTGTAACGGCATTCCA
CAACCTTGCTTCTTCTGCTGAAAGCACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.151173168
Functional Information
Coding potential Y
Potential coding position 5764877-5766646(-)
Potential amino acid sequence MYSVTAENTAQTLDGETQPGDVDMSAQPEISGSTEADNLAKYVSVREEMYNKAKEYESKIIGFE
LAIRRPYFHVKPLDNPELENWHNYLDLIEKEEDINKVIKLYERCVIACASYSEFWIRYVLCMEA
RGSIELANNALARATHVFVKKQAEIHLFSARFKELSGDVSGARVEYQHLYSDLYPGLLEAIVKH
SNMEHRLGDKESACSIYEKAIAAEKEKDRSQILPTLLIQYSRFLSLAIGDIEKAKETLTGFLEQ
CDLTKSIIELCFQQKKQGCGMPLQRIA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017