Plant Circular RNA Database

Detail information of Os03g0210450_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os03g0210450_circ_g.1
					
						ID in PlantcircBase
						osa_circ_018448
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 5761684-5763337  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ui-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0210450						
					
						Parent gene annotation
						
							Hypothetical gene. (Os03t0210450-00)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os03g0210450_circ_g.2 Os03g0210450_circ_g.3 Os03g0210450_circ_g.4 Os03g0210450_circ_g.5 Os03g0210400_circ_g.1 Os03g0210400_circ_g.2 Os03g0210400_circ_g.3 Os03g0210400_circ_g.4 Os03g0210400_circ_g.5 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0210400-01:5
Os03t0210400-01:5
Os03t0210450-00:5

General Information
CircRNA Name	Os03g0210450_circ_g.1
ID in PlantcircBase	osa_circ_018448
Alias	NA
Organism	Oryza sativa
Position	chr3: 5761684-5763337 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ui-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0210450
Parent gene annotation	Hypothetical gene. (Os03t0210450-00)
Parent gene strand	+
Alternative splicing	Os03g0210450_circ_g.2 Os03g0210450_circ_g.3 Os03g0210450_circ_g.4 Os03g0210450_circ_g.5 Os03g0210400_circ_g.1 Os03g0210400_circ_g.2 Os03g0210400_circ_g.3 Os03g0210400_circ_g.4 Os03g0210400_circ_g.5
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0210400-01:5 Os03t0210400-01:5 Os03t0210450-00:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACAGATCAGAATAAAGATGCTGGTATTCTACACGTGCTCCAGAGACATCTCCACTAAGCTCCTT
GAATCTTGCACTGAACAGATGGATCTCTGCCTGCTTctgtggtgcataagcagctccccattgt
tgccccgatgcttcagatgtcgctggccaaactggaggattatgagcatttggatcagttccca
caactggc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 765
Transcript exons: 5761684-5761947,5762315-5762464,5762576-5762656,5762987-
5763103,5763185-5763337
CTGTGGTGCATAAGCAGCTCCCCATTGTTGCCCCGATGCTTCAGATGTCGCTGGCCAAACTGGA
GGATTATGAGCATTTGGATCAGTTCCCACAACTGGCTGAGTACCATCCCCAATCCTAGCCAATT
TATCTCTGTCTGACATGATAACATCATCAGCTCTTCGCTTCTTTGATGACAGCATGCTTCTCTT
CCGCGAAAAATGAGTAAGATGCCGATTGGTAGCCTTCTTGATCGCTTGTGCATCCCCAAATAGA
TCCAAAAACTCTAAAAATATGGAAGATATGTCTTCCTTGTCAGCTAGACTTGTGACTTCCCCTT
CGGTTGGTTCAGCTGTAAGAAACTTCTCGACCAGTGAATCTAAAAATTCAATACGCTTTTCAGA
TGGAAGGATCGACTCTAGTTGCATGATAGCCTCAATAATTGATTTTGTCAAATCGCATTGTTCG
AGAAAACCAGTTAGCGTCTCCTTTGCCTTCTCGATGTCACCGATGGCCAAAGATAAGAATCGTG
AGTACTGAATCAGCAAAGTAGGCAAAATCTGGCTCCGATCCTTTTCCTTTTCAGCGGCAATGGC
CTTCTCATAAATTGAGCAAGCAGATTCTTTATCTCCCAATCGGTGCTCCATATTAGAATGCTTA
ACAATGGCTTCTAAAAGGCCAGGGTACAGATCAGAATAAAGATGCTGGTATTCTACACGTGCTC
CAGAGACATCTCCACTAAGCTCCTTGAATCTTGCACTGAACAGATGGATCTCTGCCTGCTT
						
					

						Genomic sequence
						
							CTGTGGTGCATAAGCAGCTCCCCATTGTTGCCCCGATGCTTCAGATGTCGCTGGCCAAACTGGA
GGATTATGAGCATTTGGATCAGTTCCCACAACTGGCTGAGTACCATCCCCAATCCTAGCCAATT
TATCTCTGTCTGACATGATAACATCATCAGCTCTTCGCTTCTTTGATGACAGCATGCTTCTCTT
CCGCGAAAAATGAGTAAGATGCCGATTGGTAGCCTTCTTGATCGCTTGTGCATCCCCAAATAGA
TCCAAAAACTGTAGAGAATTTAAACACACGTCACTAACTCAGCAATCGTAGTGGGTCAACCAAA
AGAACAAATAAAACAGATGCTGCCATGCAGGACAATTCAGATTAGGAAAAGAAGTACAAGCAGT
GCAATCATTTGATTCATATTCCTAGAGAATTATGATCCATTCTTCTCTGCTAGACAAACTAGTA
CTGAGGCCGTAGCTACTAGTAGGTCTCCAGTATCTCATTAACAGGCAGGCAAACAAAAAACAAA
ACATACATAAACTATCTCTAATTTGCAGTTTTAATGCTCCTGAGCTAAAAACTTCAAGATGGGT
AACTTAATATGGAAGATACTTTAAAGAGAACTGCCATGTAGCTTTGAAGAATTACCTCTAAAAA
TATGGAAGATATGTCTTCCTTGTCAGCTAGACTTGTGACTTCCCCTTCGGTTGGTTCAGCTGTA
AGAAACTTCTCGACCAGTGAATCTAAAAATTCAATACGCTTTTCAGATGGAAGGATCGACTCTA
GTTGCATGATAGCCTGCCAAAAAATGGACAAAATGATACAGAAGCAGAGAATAGCAGCGGGTAC
GAAGAAAGCGAAGGTGGTAAATAGAAAACTCAAGTAGATTTAGAAGGGGAAAAATCGTACCTCA
ATAATTGATTTTGTCAAATCGCATTGTTCGAGAAAACCAGTTAGCGTCTCCTTTGCCTTCTCGA
TGTCACCGATGGCCTGCACATTTTTAAGAAATACATCAAATTCTGCAAAAAGAGCTAGTGGAGA
CAAAAAGGAAGGGGAAAATAATTGTAATCAGATCCAATCAGCCACTTAACGAGTTAACATGACA
CAACTGGTCATCCCGTAGGCTCAAACGTTTAATATATATACAACACTTCAAACATAAATAATGA
AGAATGCCAAATGACAACATTCTATTTAATGCTGTTTTGAGTGTTTTCTTATCAGCTAATCATG
CATGTTCCATTAACAGTGTCAGATGACACAAAAGAGACATGTGCAATATTTCTGTTATCTCAAA
AGTAGCAATAAAGATACACTTACCAAAGATAAGAATCGTGAGTACTGAATCAGCAAAGTAGGCA
AAATCTGGCTCCGATCCTTTTCCTTTTCAGCGGCAATGGCCTTCTCATAAATTGAGCAAGCAGA
TTCTTTATCTCCCTGCAAGATGAAAAAGATAAATGAACCTTTTAACACAAAAAAAAAGGAAACA
ATAATGCCGTAGTTTGATTCGGGAGATACCAATCGGTGCTCCATATTAGAATGCTTAACAATGG
CTTCTAAAAGGCCAGGGTACAGATCAGAATAAAGATGCTGGTATTCTACACGTGCTCCAGAGAC
ATCTCCACTAAGCTCCTTGAATCTTGCACTGAACAGATGGATCTCTGCCTGCTT
						
					

			
		

Sequences
Splice junction sequence	ACAGATCAGAATAAAGATGCTGGTATTCTACACGTGCTCCAGAGACATCTCCACTAAGCTCCTT GAATCTTGCACTGAACAGATGGATCTCTGCCTGCTTctgtggtgcataagcagctccccattgt tgccccgatgcttcagatgtcgctggccaaactggaggattatgagcatttggatcagttccca caactggc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 765 Transcript exons: 5761684-5761947,5762315-5762464,5762576-5762656,5762987- 5763103,5763185-5763337 CTGTGGTGCATAAGCAGCTCCCCATTGTTGCCCCGATGCTTCAGATGTCGCTGGCCAAACTGGA GGATTATGAGCATTTGGATCAGTTCCCACAACTGGCTGAGTACCATCCCCAATCCTAGCCAATT TATCTCTGTCTGACATGATAACATCATCAGCTCTTCGCTTCTTTGATGACAGCATGCTTCTCTT CCGCGAAAAATGAGTAAGATGCCGATTGGTAGCCTTCTTGATCGCTTGTGCATCCCCAAATAGA TCCAAAAACTCTAAAAATATGGAAGATATGTCTTCCTTGTCAGCTAGACTTGTGACTTCCCCTT CGGTTGGTTCAGCTGTAAGAAACTTCTCGACCAGTGAATCTAAAAATTCAATACGCTTTTCAGA TGGAAGGATCGACTCTAGTTGCATGATAGCCTCAATAATTGATTTTGTCAAATCGCATTGTTCG AGAAAACCAGTTAGCGTCTCCTTTGCCTTCTCGATGTCACCGATGGCCAAAGATAAGAATCGTG AGTACTGAATCAGCAAAGTAGGCAAAATCTGGCTCCGATCCTTTTCCTTTTCAGCGGCAATGGC CTTCTCATAAATTGAGCAAGCAGATTCTTTATCTCCCAATCGGTGCTCCATATTAGAATGCTTA ACAATGGCTTCTAAAAGGCCAGGGTACAGATCAGAATAAAGATGCTGGTATTCTACACGTGCTC CAGAGACATCTCCACTAAGCTCCTTGAATCTTGCACTGAACAGATGGATCTCTGCCTGCTT
Genomic sequence	CTGTGGTGCATAAGCAGCTCCCCATTGTTGCCCCGATGCTTCAGATGTCGCTGGCCAAACTGGA GGATTATGAGCATTTGGATCAGTTCCCACAACTGGCTGAGTACCATCCCCAATCCTAGCCAATT TATCTCTGTCTGACATGATAACATCATCAGCTCTTCGCTTCTTTGATGACAGCATGCTTCTCTT CCGCGAAAAATGAGTAAGATGCCGATTGGTAGCCTTCTTGATCGCTTGTGCATCCCCAAATAGA TCCAAAAACTGTAGAGAATTTAAACACACGTCACTAACTCAGCAATCGTAGTGGGTCAACCAAA AGAACAAATAAAACAGATGCTGCCATGCAGGACAATTCAGATTAGGAAAAGAAGTACAAGCAGT GCAATCATTTGATTCATATTCCTAGAGAATTATGATCCATTCTTCTCTGCTAGACAAACTAGTA CTGAGGCCGTAGCTACTAGTAGGTCTCCAGTATCTCATTAACAGGCAGGCAAACAAAAAACAAA ACATACATAAACTATCTCTAATTTGCAGTTTTAATGCTCCTGAGCTAAAAACTTCAAGATGGGT AACTTAATATGGAAGATACTTTAAAGAGAACTGCCATGTAGCTTTGAAGAATTACCTCTAAAAA TATGGAAGATATGTCTTCCTTGTCAGCTAGACTTGTGACTTCCCCTTCGGTTGGTTCAGCTGTA AGAAACTTCTCGACCAGTGAATCTAAAAATTCAATACGCTTTTCAGATGGAAGGATCGACTCTA GTTGCATGATAGCCTGCCAAAAAATGGACAAAATGATACAGAAGCAGAGAATAGCAGCGGGTAC GAAGAAAGCGAAGGTGGTAAATAGAAAACTCAAGTAGATTTAGAAGGGGAAAAATCGTACCTCA ATAATTGATTTTGTCAAATCGCATTGTTCGAGAAAACCAGTTAGCGTCTCCTTTGCCTTCTCGA TGTCACCGATGGCCTGCACATTTTTAAGAAATACATCAAATTCTGCAAAAAGAGCTAGTGGAGA CAAAAAGGAAGGGGAAAATAATTGTAATCAGATCCAATCAGCCACTTAACGAGTTAACATGACA CAACTGGTCATCCCGTAGGCTCAAACGTTTAATATATATACAACACTTCAAACATAAATAATGA AGAATGCCAAATGACAACATTCTATTTAATGCTGTTTTGAGTGTTTTCTTATCAGCTAATCATG CATGTTCCATTAACAGTGTCAGATGACACAAAAGAGACATGTGCAATATTTCTGTTATCTCAAA AGTAGCAATAAAGATACACTTACCAAAGATAAGAATCGTGAGTACTGAATCAGCAAAGTAGGCA AAATCTGGCTCCGATCCTTTTCCTTTTCAGCGGCAATGGCCTTCTCATAAATTGAGCAAGCAGA TTCTTTATCTCCCTGCAAGATGAAAAAGATAAATGAACCTTTTAACACAAAAAAAAAGGAAACA ATAATGCCGTAGTTTGATTCGGGAGATACCAATCGGTGCTCCATATTAGAATGCTTAACAATGG CTTCTAAAAGGCCAGGGTACAGATCAGAATAAAGATGCTGGTATTCTACACGTGCTCCAGAGAC ATCTCCACTAAGCTCCTTGAATCTTGCACTGAACAGATGGATCTCTGCCTGCTT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.229029096

Conservation Information
Conserved circRNAs	NA
PMCS	0.229029096

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							5763255-5761821(+)
5763201-5761686(-)
5761930-5763267(-)
5761710-5763293(-)
						
					

						Potential amino acid sequence
						
							MLVFYTCSRDISTKLLESCTEQMDLCLLLWCISSSPLLPRCFRCRWPNWRIMSIWISSHNWLST
IPNPSQFISV*(+)
MEHRLGDKESACSIYEKAIAAEKEKDRSQILPTLLIQYSRFLSLAIGDIEKAKETLTGFLEQCD
LTKSIIEAIMQLESILPSEKRIEFLDSLVEKFLTAEPTEGEVTSLADKEDISSIFLEFLDLFGD
AQAIKKATNRHLTHFSRKRSMLSSKKRRADDVIMSDRDKLARIGDGTQPVVGTDPNAHNPPVWP
ATSEASGQQWGAAYAPQKQAEIHLFSARFKELSGDVSGARVEYQHLYSDLYPGLLEAIVKHSNM
EHRLGDKESACSIYEKAIAAEKEKDRSQILPTLLIQYSRFLSLAIGDIEKAKETLTGFLEQCDL
TKSIIEAIMQLESILPSEKRIEFLDSLVEKFLTAEPTEGEVTSLADKEDISSIFLEFLDLFGDA
QAIKKATNRHLTHFSRKRSMLSSKKRRADDVIMSDRDKLARIGDGTQPVVGTDPNAHNPPVWPA
TSEASGQQWGAAYAPQKQAEIHLFSARFKELSGDVSGARVEYQHLYSDLYPGLLEAIVKHSNME
HRLGDKESACSIYEKAIAAEKEKDRSQILPTLLIQYSRFLSLAIGDIEKAKETLTGFLEQCDLT
KSIIEAIMQLESILPSEKRIEFLDSLVEKFLTAEPTEGEVTSLADKEDISSIFLEFLDLFGDAQ
AIKKATNRHLTHFSRKRSMLSSKKRRADDVIMSDRDKLARIGDGTQPVVGTDPNAHNPPVWPAT
SEASGQQWGAAYAPQKQAEIHLFSARFKELSGDVSGARVEYQHLYSDLYPGLLEAIVKHSNMEH
RLGDKESACSIYEKAIAAEKEKDRSQILPTLLIQYSRFLSLAIGDIEKAKETLTGFLEQCDLTK
SIIEAIMQLESILPSEKRIEFLDSLVEKFLTAEPTEGEVTSLADKEDISSIFLEFLDLFGDAQA
IKKATNRHLTHFSRKRSMLSSKKRRADDVIMSDRDKLARIGDGTQPVVGTDPNAHNPPVWPATS
EASGQQWGAAYAPQ(-)
MHKRSRRLPIGILLIFRGREACCHQRSEELMMLSCQTEINWLGLGMVLSQLWELIQMLIILQFG
QRHLKHRGNNGELLMHHRSRQRSICSVQDSRSLVEMSLEHV*(-)
MGSCLCTTEAGRDPSVQCKIQGA*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	5763255-5761821(+) 5763201-5761686(-) 5761930-5763267(-) 5761710-5763293(-)
Potential amino acid sequence	MLVFYTCSRDISTKLLESCTEQMDLCLLLWCISSSPLLPRCFRCRWPNWRIMSIWISSHNWLST IPNPSQFISV(+) MEHRLGDKESACSIYEKAIAAEKEKDRSQILPTLLIQYSRFLSLAIGDIEKAKETLTGFLEQCD LTKSIIEAIMQLESILPSEKRIEFLDSLVEKFLTAEPTEGEVTSLADKEDISSIFLEFLDLFGD AQAIKKATNRHLTHFSRKRSMLSSKKRRADDVIMSDRDKLARIGDGTQPVVGTDPNAHNPPVWP ATSEASGQQWGAAYAPQKQAEIHLFSARFKELSGDVSGARVEYQHLYSDLYPGLLEAIVKHSNM EHRLGDKESACSIYEKAIAAEKEKDRSQILPTLLIQYSRFLSLAIGDIEKAKETLTGFLEQCDL TKSIIEAIMQLESILPSEKRIEFLDSLVEKFLTAEPTEGEVTSLADKEDISSIFLEFLDLFGDA QAIKKATNRHLTHFSRKRSMLSSKKRRADDVIMSDRDKLARIGDGTQPVVGTDPNAHNPPVWPA TSEASGQQWGAAYAPQKQAEIHLFSARFKELSGDVSGARVEYQHLYSDLYPGLLEAIVKHSNME HRLGDKESACSIYEKAIAAEKEKDRSQILPTLLIQYSRFLSLAIGDIEKAKETLTGFLEQCDLT KSIIEAIMQLESILPSEKRIEFLDSLVEKFLTAEPTEGEVTSLADKEDISSIFLEFLDLFGDAQ AIKKATNRHLTHFSRKRSMLSSKKRRADDVIMSDRDKLARIGDGTQPVVGTDPNAHNPPVWPAT SEASGQQWGAAYAPQKQAEIHLFSARFKELSGDVSGARVEYQHLYSDLYPGLLEAIVKHSNMEH RLGDKESACSIYEKAIAAEKEKDRSQILPTLLIQYSRFLSLAIGDIEKAKETLTGFLEQCDLTK SIIEAIMQLESILPSEKRIEFLDSLVEKFLTAEPTEGEVTSLADKEDISSIFLEFLDLFGDAQA IKKATNRHLTHFSRKRSMLSSKKRRADDVIMSDRDKLARIGDGTQPVVGTDPNAHNPPVWPATS EASGQQWGAAYAPQ(-) MHKRSRRLPIGILLIFRGREACCHQRSEELMMLSCQTEINWLGLGMVLSQLWELIQMLIILQFG QRHLKHRGNNGELLMHHRSRQRSICSVQDSRSLVEMSLEHV(-) MGSCLCTTEAGRDPSVQCKIQGA*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0210450_circ_g.1

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