Detail information of BGIOSGA034325_circ_g.2


General Information
CircRNA Name BGIOSGA034325_circ_g.2
ID in PlantcircBase osi_circ_001141
Alias NA
Organism Oryza sativa ssp. indica
Position chr11: 5058122-5059470  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method DCC
Parent gene BGIOSGA034325
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034325_circ_igg.1 BGIOSGA034325_circ_g.1 BGIOSGA034325_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   AG-GT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCACAAAATCCCAATAAACAATAGTTGACTATAAGTAGATTGTGACCATAAGTAATAGTGTTCC
TATATATACTCCTACAAACACTTGTAAGATGCCATGgacgctctaataaatcatagaaattata
agaaaaaagaaaaatattcgaccatcgattttcatttaatctggtggacctattattttcaacc
attaaatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACGCTCTAATAAATCATAGAAATTATAAGAAAAAAGAAAAATATTCGACCATCGATTTTCATT
TAATCTGGTGGACCTATTATTTTCAACCATTAAATCTATCTTAAAAATTACTAATTAAATTTAT
CAATAAAAAGGCCCATGTCATAATGCCACTATCGTCCAATATACATGCACATAGGTACGTAGGT
ATTCCTCCTTAAAAAAAAGTATGTACCTACATACAGTACATACACATGTATTTCTCTGTAAGAA
AAAAAATATGTACTTATGTACGGTATGTACACACGTCGGGTCCCACATCCTTATTTTTTCTTTT
TTTTTTCTCATTTAGACTTGATGGAAAACCAAACTAATAATTAAACCCATATTAACTATGCTTT
AAGTTGTAAAACAATATATGCTATTTCGAGTTGTATTCAAATTAGGCGCATGTCATCGAAACAT
AAAAAACATAAATAAATTAAAAGTATAGATTATATGGTTGTTAAATTAGACTTACATTTTCCAA
AATAAAAACAACTTCAACTGTGGGTAGAATTTCAAAAATTATTCACTCCCTATTGTAAAAAATA
CTTATATGGAAAAAGGATTTTACTAAATTTATCACAAATATATTTTCATGTATTATGTGTTTAC
TCTATTCATATATTACTAGAAAATTGAATATCAAATATATTCATTGGACACCATATTAATATCC
TTTTTCTCCTACTTAGCCTTCGTTCGATCTGGCTCATTGATTTAGCTTATATATGCCACGCGAA
AAGACACAAGTCATTAGCACATGATTAATCGAGTATTAAATATTACAAACTTGAAAATGGATTT
TATTTTTTTTAGAAAACTTCTATAATAAAAATTATTTTGTAAAATACACACCATTTAGCAATTC
GGTAAACGTGGTCACGATAAATAACGGAGTACTCCAATCCGATAAGTACTTTAGAACTTAACCA
TAATTTATTACTTATGTACTAAAACTAAATATGTAGTATATAATATACTTTTGTGAATCAAGAA
TGGTATAATATATCATCATATGTCCCCGCTAAATCCCATGTATAAGTTCTATATATAAACCAGT
GTCACCAATCGTCAAGTTATATTGCTTATGATACATCCATGCACAATGCACCTAATAATTAGTT
GACATCCAGTAAACACGTGTGTCATCAAGCACCAAAGATAAAAGGATGGTACTAAGTGGGAAAC
CATTAACAATAAATCATAGGTAAATAGAGGATGCCACAAAATCCCAATAAACAATAGTTGACTA
TAAGTAGATTGTGACCATAAGTAATAGTGTTCCTATATATACTCCTACAAACACTTGTAAGATG
CCATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019