Detail information of BGIOSGA034325_circ_g.1


General Information
CircRNA Name BGIOSGA034325_circ_g.1
ID in PlantcircBase osi_circ_001140
Alias NA
Organism Oryza sativa ssp. indica
Position chr11: 5058063-5059442  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method DCC
Parent gene BGIOSGA034325
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034325_circ_igg.1 BGIOSGA034325_circ_g.2 BGIOSGA034325_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-CT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAATAAATCATAGGTAAATAGAGGATGCCACAAAATCCCAATAAACAATAGTTGACTATAAGT
AGATTGTGACCATAAGTAATAGTGTTCCTATATATAtcctacaaacccttttaatttaccacaa
gtaccatataaacgctcatataccatcatgtgacgctctaataaatcatagaaattataagaaa
aaagaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCCTACAAACCCTTTTAATTTACCACAAGTACCATATAAACGCTCATATACCATCATGTGACGC
TCTAATAAATCATAGAAATTATAAGAAAAAAGAAAAATATTCGACCATCGATTTTCATTTAATC
TGGTGGACCTATTATTTTCAACCATTAAATCTATCTTAAAAATTACTAATTAAATTTATCAATA
AAAAGGCCCATGTCATAATGCCACTATCGTCCAATATACATGCACATAGGTACGTAGGTATTCC
TCCTTAAAAAAAAGTATGTACCTACATACAGTACATACACATGTATTTCTCTGTAAGAAAAAAA
ATATGTACTTATGTACGGTATGTACACACGTCGGGTCCCACATCCTTATTTTTTCTTTTTTTTT
TCTCATTTAGACTTGATGGAAAACCAAACTAATAATTAAACCCATATTAACTATGCTTTAAGTT
GTAAAACAATATATGCTATTTCGAGTTGTATTCAAATTAGGCGCATGTCATCGAAACATAAAAA
ACATAAATAAATTAAAAGTATAGATTATATGGTTGTTAAATTAGACTTACATTTTCCAAAATAA
AAACAACTTCAACTGTGGGTAGAATTTCAAAAATTATTCACTCCCTATTGTAAAAAATACTTAT
ATGGAAAAAGGATTTTACTAAATTTATCACAAATATATTTTCATGTATTATGTGTTTACTCTAT
TCATATATTACTAGAAAATTGAATATCAAATATATTCATTGGACACCATATTAATATCCTTTTT
CTCCTACTTAGCCTTCGTTCGATCTGGCTCATTGATTTAGCTTATATATGCCACGCGAAAAGAC
ACAAGTCATTAGCACATGATTAATCGAGTATTAAATATTACAAACTTGAAAATGGATTTTATTT
TTTTTAGAAAACTTCTATAATAAAAATTATTTTGTAAAATACACACCATTTAGCAATTCGGTAA
ACGTGGTCACGATAAATAACGGAGTACTCCAATCCGATAAGTACTTTAGAACTTAACCATAATT
TATTACTTATGTACTAAAACTAAATATGTAGTATATAATATACTTTTGTGAATCAAGAATGGTA
TAATATATCATCATATGTCCCCGCTAAATCCCATGTATAAGTTCTATATATAAACCAGTGTCAC
CAATCGTCAAGTTATATTGCTTATGATACATCCATGCACAATGCACCTAATAATTAGTTGACAT
CCAGTAAACACGTGTGTCATCAAGCACCAAAGATAAAAGGATGGTACTAAGTGGGAAACCATTA
ACAATAAATCATAGGTAAATAGAGGATGCCACAAAATCCCAATAAACAATAGTTGACTATAAGT
AGATTGTGACCATAAGTAATAGTGTTCCTATATATA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019