Detail information of Os04g0503550_circ_g.6


General Information
CircRNA Name Os04g0503550_circ_g.6
ID in PlantcircBase osa_circ_024486
Alias NA
Organism Oryza sativa
Position chr4: 25130051-25131818  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0503500
Parent gene annotation Leucine-rich repeat, cysteine-containing subtype containing prot
ein. (Os04t0503500-01);Leucine-rich repeat, cysteine-containing
subtype containing protein. (Os04t0503500-02)
Parent gene strand -
Alternative splicing Os04g0503550_circ_g.4 Os04g0503550_circ_g.5 Os04g0503550_circ_g.7 Os04g0503550_circ_g.8 Os04g0503550_circ_g.9 Os04g0503550_circ_g.10 Os04g0503550_circ_g.11
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0503550-00:4
Os04t0503500-02:4
Os04t0503550-00:4
Os04t0503500-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGATGGTCAACATAAAGGTGTTACCTGATAAATGTTTCATATCAGAATCTGTGATGCCATTAC
AATACCTCAAATTTAGCTTTTCCAGTTTTCTCAAGCcttccaaatgctcacagccttcgtcata
tactccacatctactaagattcaacaataccaatgaagccaatcctgtaataacatcactatta
atgaaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCAAATGCTCACAGCCTTCGTCATATACTCCACATCTACTAAGATTCAACAATACCAATGA
AGCCAATCCTGTAATAACATCACTATTAATGAAAACTTTTTTGAGAATACGCACAAAAGCCTTG
TGCATCTTTTGTATTAAGAGAAAGGGAGTTTTTAAAACTTTACAATCTTCCGCTGAAAGGAAAA
CAAGCAAATGAGAAAGAAAGAAAACACAAAAGGCGTGGGGCTATATCTCGCAACAAGTTTGGCA
ACCGTTTAGTGAGCGGTGGCTCAGATGGGCAGGCCAGCCACACGCCAGACCGCTGCTTCTTCCT
CCATGGCCGCGCTTATTACCCCCCCCCCCCCCCCCCCGCCCGATTTCCTCTCGTTGTTGAACAC
CTTATTGTTTCTATTAATGAAAATATGATCTCACCAAACAGGGAGCTTGTTAAGTGTTCATGTA
ATCATGAAATAGATTACATCAAAGAGCAGTACACCAGAGTTGTCAAACATACTGTACGCTGAGT
ACAGAGAAATATCTTAGGCAACTAAAGAGTTCTATAAACCAGCATTCTAATCGCTAGCTGCGCA
ACAGTAATATGGTAAGCTTACGCTTCACAGAGAAATATAGGACTGAAAAAAGAAGAAGAAAATG
TGCCTCAAGTCAACAATGAATTTCCTTTGAAAATAATAAAATGAAATTCCATTACCATCTATAA
GCACCAAAAGTAATAAAAAAATCTCTCATTTACAAGAAGCAGCATAATAGTCCTATAGTACTTC
CTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATGTTGATGTTAATGAATCTAG
ATAAATATATATGTCTAGATTCATTAACATTAATATGAATATGGGAAATGCTAAAATGACTTAC
ATTGTGAAACGGAGGGAGTAGAAGCAAGACACTCTCAAGTTACCTAGCCACTTTGTCATTCTCA
TTCAACTTGCAAAGGGAATTTCTAAAACTTTCATGTCAAATCCACCAGAAGAGATTTCTCTGGG
GATAAATCCATGAGGTAGTTGACTATATATAGAATGAGAACCAAAAGAAATGTGTGAAATTTCA
TGACATGCACTTCTTCAGGTCCCTAAATATCCATTTTTGGTAATGAATTTAATGGATTATTCTA
CATGAGTTCTGGCAGATGTGGCACCCTTTCAACAGTCAAATTAAATTACCCCAAGGACTTCCCT
AGAATAAATGTAAGACATTTTCATGGAAGCGTGAACTGATAACATAGCACTCGTATGGAAAAGA
TGCAAAACCTGAAATAACCTCCAAACAAGCAGCAGTTACTGCACAGCCCTCCAGGTTTAGGTGA
GCTAGCTTCGATAGACCTGTAAAGAACAAATACAAAATATGAAACAGAGGCTAACTTTAGATGA
AACTTCATGTCATTATATTAATAGAAACAACGAATTAATCAGAATATTACAGATACAAATGGAT
GTAGCTTTAGGTAGATAAGGTTCCACTGGAAAAGGAAGAAATTTATTTCTGGGATACCTCTTAG
ATAAGAAACACCAAGATCACTTATTTTGCAGCAAGAAAGTTGAAGCTCTCTCAAATTTGTAAGA
TCTACAAGGAAAAGGGTATTTATTAGACGTGCAGATCAGTATGTGTGATAACATACACTGCTTG
ACACTAGATGGTCAACATAAAGGTGTTACCTGATAAATGTTTCATATCAGAATCTGTGATGCCA
TTACAATACCTCAAATTTAGCTTTTCCAGTTTTCTCAAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.106436637
Functional Information
Coding potential Y
Potential coding position 25131774-25131391(+)
25131761-25130053(-)
Potential amino acid sequence MPLQYLKFSFSSFLKPSKCSQPSSYTPHLLRFNNTNEANPEITSKQAAVTAQPSRFR*(+)
MKHLSDLTNLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLS
RCGVYDEGCEHLEGLRKLEKLNLRYCNGITDSDMKHLSDLTNLRELQLSCCKISDLGVSYLRGL
SKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGVYDEGCEHLEGLRKLEKLNLRYCNGITD
SDMKHLSDLTNLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISGLASLVLLN
LSRCGVYDEGCEHLEGLRKLEKLNLRYCNGITDSDMKHLSDLTNLRELQLSCCKISDLGVSYLR
GLSKLAHLNLEGCAVTAACLEVISGLASLVLLNLSRCGVYDEGCEHLE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017