Detail information of BGIOSGA008057_circ_g.3


General Information
CircRNA Name BGIOSGA008057_circ_g.3
ID in PlantcircBase osi_circ_003857
Alias 2:13407467|13411884
Organism Oryza sativa ssp. indica
Position chr2: 13407467-13411884  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA008057
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA008057_circ_g.1 BGIOSGA008057_circ_g.2 BGIOSGA008057_circ_g.4 BGIOSGA008057_circ_g.5 BGIOSGA008057_circ_g.6 BGIOSGA008057_circ_g.7 BGIOSGA008057_circ_g.8 BGIOSGA008057_circ_g.9 BGIOSGA008057_circ_g.10 BGIOSGA008057_circ_ag.1
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered BGIOSGA008057-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTCTTTCAGATAAAGTTGCCTTTCAGAGGAAGAGGCATTGCTGGCCCACGTCAATTTCTGAT
GATCGAAGACAGAAAAGGATTTTTCACATATTAAAGgacttctggtctcacacaacgcagtcta
agcaaagaggccgagataaaaggaaacaacttccattatgttgtgaagacacttaagtcgcaag
ggttaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACTTCTGGTCTCACACAACGCAGTCTAAGCAAAGAGGCCGAGATAAAAGGAAACAACTTCCAT
TATGTTGTGAAGACACTTAAGTCGCAAGGGTTAATTGTTGGAAAACAAGCAATTGCAAAGATTA
ATACCCAAGCTAAAAGGAAAGCTGTTTCACAGGATAAACATGTCATCAGCACAAACTCATTATA
TCTCTCAAGATATGCGAAAAACTTGAATATGAACTCATACCAAAGAATTGAGATTACAAAGCCC
AAACTTGAGTGCAATGAAGAAACTAACATAGATGCCTTACAAGAAGATGAGACTCTTAGTGTTG
ATTACAAGAACGATGTGTCCATTCATGATTATCTTCCAGCAATGAAAGCCATATGCGACAAACT
TGAAGAAGCTAGTGGAAAGGTCAACCGTTCTCTTCCTTTTGTTTGTGCGTTGCTTTTCATTTTT
CACTGTGCTAACTTTGTGCAACTATTTTCTCTATATGTAGGTTCTTGCTGTATCAGATATAAAA
AAGGATCTCAGTTACAGGATGCAACCTGGGCACAGAGCATGGAGAAATGTAGGTTTGCTTGGAA
TCACTTTGCACATATGTTCTCTATTTACTTGTTGCTCTCCTTATGGGATGCTATTGAGATACCC
TTTTCTTTAGGTACTGCATAGGCTTTTAGGTGCACAACTCGTTGAAAAAATCGCTGCCAACCTT
GATGATAAGGTGAATTTAATTATTTACATTTATCGTTTTACCTTTCCTAACATATTTGCTTCTT
GTTAAGGAAATTCAAGAAATTGACTTTGTATCTTTTAAAAAAGTTCAGGCTTTAAAAATCTGGT
CCTTCATAATTTTAATTACACACCAGCATGATCCATTCCCTTGTTCAGATGGCGATGGAACCTT
TTCTTTTGTCCAACAAAGCTGCATCCACAGTTATGTTTTCCACTATACTAATCTGAAACGGAGT
GCACAAGGTGACAGAACTGAGACCCTGAATCCAAATAAAACGGTCTTATTTGAAAGACAATAAA
AGCTGGACTAGAGACTTCCCTGAGATATAAAACTATGAATTGACAATTAATAACTCATACTGAA
GGGAAAAAAACTGCTATTCAAGATAAAACTATGTCAACAAATCTCTATGATTGTATCAGTTGCA
TTCAATAATGTGATCTTTTTGACCACTGCAACAACCTATGCAATATTTTATTTTGAAACTGCAA
TGAAAAGCGATAATACAATCTGTTAGGCATGAAAGGTGTTAATTACTATGCGGTACCCTTTGTG
AGCTGCAACCATTTTATGCTGTTGCATACTTCATGCACCTACAAGCTGTATAAATCATTCCCTT
TTCCAGATTGTTCACTGCTTACGTCTCTGAAGAGATTTAATCCAGATGAGTTTAAGCCAAAAGG
TACAATCTCAAACTACAAACTTGGCAAGAAAGGCCTGGAAACTGATCAAGTCATGGAGCTTCCA
TTAGACAACTGTATATATGATATGATCGATGCTCAAGAGCCAAAAGGCATAACCCTTATTGAGG
TACCTCTCTGGACCTTTCAGCGGGGGAACTTTGGTGTAATATTCTTTTTTAATTATATATGCTA
AATTTCTTCACAGCAACAAGAGTGCCTTCATATTCCTTGTTTCCAGAGTGCTATTCAGCATAAT
TTAATGATTGAAAATATTCTTCATCTAACTTCCTCTGAGCTATTTGCGAACATATTGAAAATAT
TATCGAACAAAAAAAGAAATAATACCTCCCAAAAAACAAATTAACATTTACAGAAGGTCTGTGG
CTCCAAGCTGCCCCACTGCCCAATGAAGGTTGGAATAGACCTTGCCACCACTTTTATAGTTCGT
TTTTGTCGTTGCAAGTTTGGTATTTTTTTCTCTAGGTTGTGACTGAGAGGTTGGACACAATTGC
AACAACGACTGGGACTGGGTGTGGCGGTAGGTCGAGGGTTAAGGCTGAAACATTAGTTGAGCAT
AGTGGTTGAGGCATCAAATGGGCTGCTGCTGTGGAGCATCTGTGGTGTCGGCACCAAGAATAAT
GGCGAAGGCAAGAGGGCATGGTGGAACTGCTGCCATGGAGCATCTTTGTGGTGTTGGTCAAGAA
TAATGGTGAAGGCAAGAGGGCATGATGGAGCATGGGTAGTGATTGAGCAGAACGGAGGAGATTG
TGCAGGTCGTAGGCAATGATAGCAGCTTGACATGTTATTGTGATATGACTTTTTCTTATCCGTG
TTGATGCTTGTGCATGAATCTAGTGAGCTAAAATTGTATGCGCTCAAACAAATTTGATAGAAGA
CTTCAATATCATTCTGAAGACCTTTGTGGTCAGCGACTCAGCATTGTTATCCCTCAATATGGGA
GTTTCATAAGCAATATAACAATTCAAACATTTTGAAACTATTGTTTCCCTAATGGGCCCTTATC
ATTTCAAGCTAGTTGTTGTTGTTGTTATTTGGGGTTGGGAGAGGGGGGGGGGGGGTGGTAAATT
CACTCTGGTCTAGGCTAGGGCCTGTGCGTACAGTTTCCAAATAATGATCATATACTCTATGTCT
TGAAAAGAGCCAAAATTGTGATCTTGCTATCTTCAAACTATATAAAACATATCGTCCACATGTA
CACCTGTCCACAGTTGTTTATGATGTAATTGTTTTTTTACCATTCTAGAAGTCGCACACATGTC
TACATAAATCCATCCACACAAGGTCAGCATACAGCGCACCAGCACCAGGGATGACTTGCTGTCT
GTGTCTCACCAGGGGTTAAATCTCCAAAATAGATTTCAAGCCTAGCCGCTATGAACCACAATGG
TCCTGGTGACATGACTGTCGCCGCCTCAGAAACTTGTGATATGTAGTGTGCTTCCAAATGATGG
AGTAGAGACTCAAAAGAGGGAAAAAACACTCTTTATGTAGTAGAATTGTAGAAATATGACCTTT
GATAGAGTCTATACATCTGAGCTATCAGTAATCTCTCTATCTTATATCTTATGGGCAAGCAAAT
GCAAGCCTATGACTATCCGGTGCAGCTTATCATGAGATGTTAGCCAGTTTTAGTCCTGCGCTGA
TTCTGTGTTGTATTTGGCTCATTTCTAGCATCATAACTTTTTTTTTGTTTGAGCTGCATTTCTA
GCATCACAAGCATTTCTTTGTTTTTGTTTGAGCTACAATGGCATTAACTAATTTATTTCGTCCC
GAACTTAAATGAGATAGATATAAAATTCTTGCAATGACATTATCCTTCTTGGTGTAATCCCTAA
CAAAAATAGGCAAAACTCCCTGTCATGAAGACAATAATATATGGGCACATAAAGTTGGTTGAGT
GTTGTTTTCTTTTCTCTAGTATGAATCCATTTTTTCTGTTGAGGAAATTTCTTTGTTCATATTT
GAGCTTTTAGAACCTAAGTATATTTATTTGAGATCCATCACAGCTGTATATTTATTTGCCTTTA
TTATTTTTATATTATTGTTGTTGTTTATTGAAATCAGCAACTCTTGTTCTCATTAATTTCCAAT
CAGCTTGGCAAACGTCTTGGGGGAAAGTACAACAATTCGAAAGAGCTCCATGATCGAGTATCAT
CTATGCATGATAGATTCAATCTGACTGTGGAGGTTGAAGTCGTTGCAAAAGTAAACAGGCAGAG
TTTGGACTTCAAAAATTTTTCGCTGTACAATGCTACTCTGTGAAATTGTGATGTGCCAGATGAT
CATGACTATTGTTCAGTATGGCCTCTCATTCCTTCTGAAGAACCGACTTCTGTTAGCCCATATG
GTTTTGTGGTTAATAACAAACTCTTGTTTGAAGAAGATTGTCATGATGAACCACCCGTACATCG
TCTCCTGAATAGCCATGAAGCTTGTGTTGGAGTTTCTCAACCAGTTGAACAAGGTACATCATTC
TAAATTCCTGTCAGTTCTTTTTTTCTCTCTCTAAAATAGTGACACGATCATGCATTACAATGGG
CCCATATGACTGGGAATAGGCTGGGGGTGTGCATGTAGGATAAAACACATGATCCAACTTTTGT
TTTTCTGTTAACCAACCACTTGGTTTTCTATCTTGTTTATCTGAAGAGGTGTTGGTACAACATG
AGGGGAGGGTTGGACGGATGATTCCCCTTTTTATAGTAAGAAATTGTGCTTAGTGTTTCTTTGG
AAACTACTGTGCTGCTGTAAGAGCTTGTGGTCTCTGTGCCCATAGATCCAAAAGGCCCATAGAA
AACCTAGAGTTTCAATCTTTGATGCATGAGCACCTTATTGAAATCAACAGAGTAGGACAGAGTA
CAGTTTTGCTCAATTAAGGTGATCCTTTTTTTTTCTTTCAGATAAAGTTGCCTTTCAGAGGAAG
AGGCATTGCTGGCCCACGTCAATTTCTGATGATCGAAGACAGAAAAGGATTTTTCACATATTAA
AG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021