Detail information of BGIOSGA008057_circ_g.1


General Information
CircRNA Name BGIOSGA008057_circ_g.1
ID in PlantcircBase osi_circ_011588
Alias Chr02:12355393_12359813(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 13407466-13411884  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2
Parent gene BGIOSGA008057
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA008057_circ_g.2 BGIOSGA008057_circ_g.3 BGIOSGA008057_circ_g.4 BGIOSGA008057_circ_g.5 BGIOSGA008057_circ_g.6 BGIOSGA008057_circ_g.7 BGIOSGA008057_circ_g.8 BGIOSGA008057_circ_g.9 BGIOSGA008057_circ_g.10 BGIOSGA008057_circ_ag.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-TA
Number of exons covered BGIOSGA008057-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTCTTTCAGATAAAGTTGCCTTTCAGAGGAAGAGGCATTGCTGGCCCACGTCAATTTCTGAT
GATCGAAGACAGAAAAGGATTTTTCACATATTAAAGggacttctggtctcacacaacgcagtct
aagcaaagaggccgagataaaaggaaacaacttccattatgttgtgaagacacttaagtcgcaa
gggttaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACTTCTGGTCTCACACAACGCAGTCTAAGCAAAGAGGCCGAGATAAAAGGAAACAACTTCCA
TTATGTTGTGAAGACACTTAAGTCGCAAGGGTTAATTGTTGGAAAACAAGCAATTGCAAAGATT
AATACCCAAGCTAAAAGGAAAGCTGTTTCACAGGATAAACATGTCATCAGCACAAACTCATTAT
ATCTCTCAAGATATGCGAAAAACTTGAATATGAACTCATACCAAAGAATTGAGATTACAAAGCC
CAAACTTGAGTGCAATGAAGAAACTAACATAGATGCCTTACAAGAAGATGAGACTCTTAGTGTT
GATTACAAGAACGATGTGTCCATTCATGATTATCTTCCAGCAATGAAAGCCATATGCGACAAAC
TTGAAGAAGCTAGTGGAAAGGTCAACCGTTCTCTTCCTTTTGTTTGTGCGTTGCTTTTCATTTT
TCACTGTGCTAACTTTGTGCAACTATTTTCTCTATATGTAGGTTCTTGCTGTATCAGATATAAA
AAAGGATCTCAGTTACAGGATGCAACCTGGGCACAGAGCATGGAGAAATGTAGGTTTGCTTGGA
ATCACTTTGCACATATGTTCTCTATTTACTTGTTGCTCTCCTTATGGGATGCTATTGAGATACC
CTTTTCTTTAGGTACTGCATAGGCTTTTAGGTGCACAACTCGTTGAAAAAATCGCTGCCAACCT
TGATGATAAGGTGAATTTAATTATTTACATTTATCGTTTTACCTTTCCTAACATATTTGCTTCT
TGTTAAGGAAATTCAAGAAATTGACTTTGTATCTTTTAAAAAAGTTCAGGCTTTAAAAATCTGG
TCCTTCATAATTTTAATTACACACCAGCATGATCCATTCCCTTGTTCAGATGGCGATGGAACCT
TTTCTTTTGTCCAACAAAGCTGCATCCACAGTTATGTTTTCCACTATACTAATCTGAAACGGAG
TGCACAAGGTGACAGAACTGAGACCCTGAATCCAAATAAAACGGTCTTATTTGAAAGACAATAA
AAGCTGGACTAGAGACTTCCCTGAGATATAAAACTATGAATTGACAATTAATAACTCATACTGA
AGGGAAAAAAACTGCTATTCAAGATAAAACTATGTCAACAAATCTCTATGATTGTATCAGTTGC
ATTCAATAATGTGATCTTTTTGACCACTGCAACAACCTATGCAATATTTTATTTTGAAACTGCA
ATGAAAAGCGATAATACAATCTGTTAGGCATGAAAGGTGTTAATTACTATGCGGTACCCTTTGT
GAGCTGCAACCATTTTATGCTGTTGCATACTTCATGCACCTACAAGCTGTATAAATCATTCCCT
TTTCCAGATTGTTCACTGCTTACGTCTCTGAAGAGATTTAATCCAGATGAGTTTAAGCCAAAAG
GTACAATCTCAAACTACAAACTTGGCAAGAAAGGCCTGGAAACTGATCAAGTCATGGAGCTTCC
ATTAGACAACTGTATATATGATATGATCGATGCTCAAGAGCCAAAAGGCATAACCCTTATTGAG
GTACCTCTCTGGACCTTTCAGCGGGGGAACTTTGGTGTAATATTCTTTTTTAATTATATATGCT
AAATTTCTTCACAGCAACAAGAGTGCCTTCATATTCCTTGTTTCCAGAGTGCTATTCAGCATAA
TTTAATGATTGAAAATATTCTTCATCTAACTTCCTCTGAGCTATTTGCGAACATATTGAAAATA
TTATCGAACAAAAAAAGAAATAATACCTCCCAAAAAACAAATTAACATTTACAGAAGGTCTGTG
GCTCCAAGCTGCCCCACTGCCCAATGAAGGTTGGAATAGACCTTGCCACCACTTTTATAGTTCG
TTTTTGTCGTTGCAAGTTTGGTATTTTTTTCTCTAGGTTGTGACTGAGAGGTTGGACACAATTG
CAACAACGACTGGGACTGGGTGTGGCGGTAGGTCGAGGGTTAAGGCTGAAACATTAGTTGAGCA
TAGTGGTTGAGGCATCAAATGGGCTGCTGCTGTGGAGCATCTGTGGTGTCGGCACCAAGAATAA
TGGCGAAGGCAAGAGGGCATGGTGGAACTGCTGCCATGGAGCATCTTTGTGGTGTTGGTCAAGA
ATAATGGTGAAGGCAAGAGGGCATGATGGAGCATGGGTAGTGATTGAGCAGAACGGAGGAGATT
GTGCAGGTCGTAGGCAATGATAGCAGCTTGACATGTTATTGTGATATGACTTTTTCTTATCCGT
GTTGATGCTTGTGCATGAATCTAGTGAGCTAAAATTGTATGCGCTCAAACAAATTTGATAGAAG
ACTTCAATATCATTCTGAAGACCTTTGTGGTCAGCGACTCAGCATTGTTATCCCTCAATATGGG
AGTTTCATAAGCAATATAACAATTCAAACATTTTGAAACTATTGTTTCCCTAATGGGCCCTTAT
CATTTCAAGCTAGTTGTTGTTGTTGTTATTTGGGGTTGGGAGAGGGGGGGGGGGGGTGGTAAAT
TCACTCTGGTCTAGGCTAGGGCCTGTGCGTACAGTTTCCAAATAATGATCATATACTCTATGTC
TTGAAAAGAGCCAAAATTGTGATCTTGCTATCTTCAAACTATATAAAACATATCGTCCACATGT
ACACCTGTCCACAGTTGTTTATGATGTAATTGTTTTTTTACCATTCTAGAAGTCGCACACATGT
CTACATAAATCCATCCACACAAGGTCAGCATACAGCGCACCAGCACCAGGGATGACTTGCTGTC
TGTGTCTCACCAGGGGTTAAATCTCCAAAATAGATTTCAAGCCTAGCCGCTATGAACCACAATG
GTCCTGGTGACATGACTGTCGCCGCCTCAGAAACTTGTGATATGTAGTGTGCTTCCAAATGATG
GAGTAGAGACTCAAAAGAGGGAAAAAACACTCTTTATGTAGTAGAATTGTAGAAATATGACCTT
TGATAGAGTCTATACATCTGAGCTATCAGTAATCTCTCTATCTTATATCTTATGGGCAAGCAAA
TGCAAGCCTATGACTATCCGGTGCAGCTTATCATGAGATGTTAGCCAGTTTTAGTCCTGCGCTG
ATTCTGTGTTGTATTTGGCTCATTTCTAGCATCATAACTTTTTTTTTGTTTGAGCTGCATTTCT
AGCATCACAAGCATTTCTTTGTTTTTGTTTGAGCTACAATGGCATTAACTAATTTATTTCGTCC
CGAACTTAAATGAGATAGATATAAAATTCTTGCAATGACATTATCCTTCTTGGTGTAATCCCTA
ACAAAAATAGGCAAAACTCCCTGTCATGAAGACAATAATATATGGGCACATAAAGTTGGTTGAG
TGTTGTTTTCTTTTCTCTAGTATGAATCCATTTTTTCTGTTGAGGAAATTTCTTTGTTCATATT
TGAGCTTTTAGAACCTAAGTATATTTATTTGAGATCCATCACAGCTGTATATTTATTTGCCTTT
ATTATTTTTATATTATTGTTGTTGTTTATTGAAATCAGCAACTCTTGTTCTCATTAATTTCCAA
TCAGCTTGGCAAACGTCTTGGGGGAAAGTACAACAATTCGAAAGAGCTCCATGATCGAGTATCA
TCTATGCATGATAGATTCAATCTGACTGTGGAGGTTGAAGTCGTTGCAAAAGTAAACAGGCAGA
GTTTGGACTTCAAAAATTTTTCGCTGTACAATGCTACTCTGTGAAATTGTGATGTGCCAGATGA
TCATGACTATTGTTCAGTATGGCCTCTCATTCCTTCTGAAGAACCGACTTCTGTTAGCCCATAT
GGTTTTGTGGTTAATAACAAACTCTTGTTTGAAGAAGATTGTCATGATGAACCACCCGTACATC
GTCTCCTGAATAGCCATGAAGCTTGTGTTGGAGTTTCTCAACCAGTTGAACAAGGTACATCATT
CTAAATTCCTGTCAGTTCTTTTTTTCTCTCTCTAAAATAGTGACACGATCATGCATTACAATGG
GCCCATATGACTGGGAATAGGCTGGGGGTGTGCATGTAGGATAAAACACATGATCCAACTTTTG
TTTTTCTGTTAACCAACCACTTGGTTTTCTATCTTGTTTATCTGAAGAGGTGTTGGTACAACAT
GAGGGGAGGGTTGGACGGATGATTCCCCTTTTTATAGTAAGAAATTGTGCTTAGTGTTTCTTTG
GAAACTACTGTGCTGCTGTAAGAGCTTGTGGTCTCTGTGCCCATAGATCCAAAAGGCCCATAGA
AAACCTAGAGTTTCAATCTTTGATGCATGAGCACCTTATTGAAATCAACAGAGTAGGACAGAGT
ACAGTTTTGCTCAATTAAGGTGATCCTTTTTTTTTCTTTCAGATAAAGTTGCCTTTCAGAGGAA
GAGGCATTGCTGGCCCACGTCAATTTCTGATGATCGAAGACAGAAAAGGATTTTTCACATATTA
AAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021