Detail information of BGIOSGA019463_circ_g.2


General Information
CircRNA Name BGIOSGA019463_circ_g.2
ID in PlantcircBase osi_circ_015197
Alias Chr05:8708986_8710404(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 10330828-10332249  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA019463
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA019463_circ_g.1 BGIOSGA019463_circ_g.3 BGIOSGA019463_circ_g.4 BGIOSGA019463_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA019463-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTTGCTGTTCTTTATCACAGACTGACATGGATAGCACCAACCTGTATGCGTACATCTCAATA
ATTGCTCTCCTTGTCTGCATCCCTCCTGCAATTATTgccgatcaactcaacggttctgaagcta
ctgttcccagttgctgtctgccatgctattggtcatgtaacaagcaccgtgtcctttgctgctg
tagctgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCGATCAACTCAACGGTTCTGAAGCTACTGTTCCCAGTTGCTGTCTGCCATGCTATTGGTCAT
GTAACAAGCACCGTGTCCTTTGCTGCTGTAGCTGTCTCATTTGCCCACACCATTAAAGGTACTG
CAACAGTATCTTGATTTTATTTTTGTATTTTTGGCCTTTTGCGTTTCTTCTTTATGCTGAGATT
TTTCCTGCAAATAAAATGAATGCAGCTCTTGAACCATTTTTCAATGCGGCTGCTTCACAGTTTA
TCCTTGGCCAGCAAGTTCCATTGACGCTGTGGTTATCTCTTGCTCCGGTTGTGATAGGTAATCT
CATTATGCCTTTTGCTTGTGTTCCTAGCAGTACATCACTTGTATCTTAACATCAATGCAAATAA
GGACATATGAAAGTAGGTTTCATGGTTGTCAAGGCCCCTGTGCAGGTGATGCCTCAGCATCCAA
GCACTCCAGTAACATTTCCATGATCAGATGCCTTGCCTTATGATGAGGGCAAATGAGAAAGAGC
CAAATTGATACTTATAGTCCTTTCTGTTGTGCAGAGTGGACACATGTTCCTAGTAGGTTGGGCC
TTGTGCCTTCTTTATTTCTTTCTTATTTCTCTCTAATTCCTATAGCGTAATGACCATTTCTTTC
TCCTGAATTCTGGTCATCATGATATTACAATGGCATATCAATAAGTGGTGTGCTACACGATGGC
ATGCTTAATGAAACCTACCTTATCGTGCGATAAACGCAACTCTGTGTGTGGGCTTTGTGGGGGG
GGGGGGGGGGGGGTAGGCTGAGCTGCCTTGGTTATTCGGGAGGAGGGAACAGACTAAAGATGAG
ATTGAAGAACCTTGGAGAAACTACAGTTTGATTATTTCACTGTTTATTGCTTAATTCCACAGAT
TCCTCCATGACATGCTTAGATAGGAAATTAATATTAATATTCTAGATATTATATAAGATGACCA
GGGAACCAGGGATACTCTTTACTATCAGTTGTCTCAGTAACATTCCTCACAGCCTCCATGCATC
TTTAATCATTTCAAGCATATTATGTTTTAGGACTTTCTAGTTGTCTCTATAGCATCTCTACTTC
TGTGCATTGGTAATCATTTGGAGTATATTCTGTTTTGAAATAATCAGGTGTTTCAATGGCATCT
CTCACTGAACTTTCATTCAATTGGACTGGTTTCGTTAATGCCATGATTTCTAATATCTCCTTCA
CATTACGGAGCGTTTATTCCAAGAAGGCTATGGTTTGCTTGTTACCTCTAATGATCTGCATGCA
TATTCACTCTTCCTTTTGATACTCCCGTTTCATTTTTTTACTTTGTTGCTGTTCTTTATCACAG
ACTGACATGGATAGCACCAACCTGTATGCGTACATCTCAATAATTGCTCTCCTTGTCTGCATCC
CTCCTGCAATTATT
Conservation Information
Conserved circRNAs osa_circ_027139
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021