Plant Circular RNA Database

Detail information of Os05g0241150_circ_g.4

			
						 General Information
					
						CircRNA Name
						Os05g0241150_circ_g.4
					
						ID in PlantcircBase
						osa_circ_027139
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 8604635-8606054  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ui-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os05g0241150						
					
						Parent gene annotation
						
							Hypothetical protein. (Os05t0241150-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os05g0241150_circ_g.3 Os05g0241150_circ_g.5 Os05g0241150_circ_g.6 						
					
						Support reads
						2
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0241200-01:4
Os05t0241200-02:4
Os05t0241150-00:4
Os05t0241200-01:4
Os05t0241200-02:4

General Information
CircRNA Name	Os05g0241150_circ_g.4
ID in PlantcircBase	osa_circ_027139
Alias	NA
Organism	Oryza sativa
Position	chr5: 8604635-8606054 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ui-circRNA
Identification method	CIRCexplorer
Parent gene	Os05g0241150
Parent gene annotation	Hypothetical protein. (Os05t0241150-00)
Parent gene strand	-
Alternative splicing	Os05g0241150_circ_g.3 Os05g0241150_circ_g.5 Os05g0241150_circ_g.6
Support reads	2
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0241200-01:4 Os05t0241200-02:4 Os05t0241150-00:4 Os05t0241200-01:4 Os05t0241200-02:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTGTTGCTGTTCTTTATCACAGACTGACATGGATAGCACCAACCTGTATGCGTACATCTCAATA
ATTGCTCTCCTTGTCTGCATCCCTCCTGCAATTATTccgatcaactcaacggttctgaagctac
tgttcccagttgctgtctgccatgctattggtcatgtaacaagcaccgtgtcctttgctgctgt
agctgtct

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 408
Transcript exons: 8604635-8604755,8604851-8604946,8605768-8605880,8605977-
8606054
CCGATCAACTCAACGGTTCTGAAGCTACTGTTCCCAGTTGCTGTCTGCCATGCTATTGGTCATG
TAACAAGCACCGTGTCCTTTGCTGCTGTAGCTGTCTCATTTGCCCACACCATTAAAGCTCTTGA
ACCATTTTTCAATGCGGCTGCTTCACAGTTTATCCTTGGCCAGCAAGTTCCATTGACGCTGTGG
TTATCTCTTGCTCCGGTTGTGATAGGTGTTTCAATGGCATCTCTCACTGAACTTTCATTCAATT
GGACTGGTTTCGTTAATGCCATGATTTCTAATATCTCCTTCACATTACGGAGCGTTTATTCCAA
GAAGGCTATGACTGACATGGATAGCACCAACCTGTATGCGTACATCTCAATAATTGCTCTCCTT
GTCTGCATCCCTCCTGCAATTATT
						
					

						Genomic sequence
						
							CCGATCAACTCAACGGTTCTGAAGCTACTGTTCCCAGTTGCTGTCTGCCATGCTATTGGTCATG
TAACAAGCACCGTGTCCTTTGCTGCTGTAGCTGTCTCATTTGCCCACACCATTAAAGGTACTGC
AACAGTATCTTGATTTTATTTTTGTATTTTTGGCCTTTTGCGTTTCTTCTTTATGCTGAGATTT
TTCCTGCAAATAAAATGATTGCAGCTCTTGAACCATTTTTCAATGCGGCTGCTTCACAGTTTAT
CCTTGGCCAGCAAGTTCCATTGACGCTGTGGTTATCTCTTGCTCCGGTTGTGATAGGTAATCTC
ATTATGCCTTTTGCTTGTGTTCCTAGCAGTACATCACTTGTATCTTAACATCAATGCAAATAAG
GACATATGAAAGTAGGTTTCATGGTTGTCAAGGCCCCTGTGCAGGTGATGCCTCAGCATCCAAG
CACTCCAGTAACATTTCCATGATCAGATGCCTTGCCTTATGATGAGGGCAAATGAGAAAGAGCC
AAATTGATACTTATAGTCCTTTCTGTTGTGCAGAGTGGACACATGTTCCTAGTAGGTTGGGCCT
TGTGCCTTCTTTATTTCTTTCTTATTTCTCTCTAATTCCTATAGCGTAATGACCATTTCTTTCT
CCTGAATTCTGGTCATCATGATATTACAATGGCATATCAATAAGTGGTGTGCTACACGATGGCA
TGCTTAATGAAACCTACCTTATCGTGCGATAAACGCAACTCTGTGTGTGGGCTTTGTGGGGGGG
GGGGGGGGGGGTAGGCTGAGCTGCCTTGGTTATTCGGGAGGAGGGAACAGACTAAAGATGAGAT
TGAAGAACCTTGGAGAAACTACAGTTTGATTATTTCACTGTTTATTGCTTAATTCCACAGATTC
CTCCATGACATGCTTAGATAGGAAATTAATATTAATATTCTAGATATTATATAAGATGACCAGG
GAACCAGGGATACTCTTTACTATCAGTTGTCTCAGTAACATTCCTCACAGCCTCCATGCATCTT
TAATCATTTCAAGCATATTATGTTTTAGGACTTTCTAGTTGTCTCTATAGCATCTCTACTTCTG
TGCATTGGTAATCATTTGGAGTATATTCTGTTTTGAAATAATCAGGTGTTTCAATGGCATCTCT
CACTGAACTTTCATTCAATTGGACTGGTTTCGTTAATGCCATGATTTCTAATATCTCCTTCACA
TTACGGAGCGTTTATTCCAAGAAGGCTATGGTTTGCTTGTTACCTCTAATGATCTGCATGCATA
TTCACTCTTCCTTTTGATACTCCCGTTTCATTTTTTTACTTTGTTGCTGTTCTTTATCACAGAC
TGACATGGATAGCACCAACCTGTATGCGTACATCTCAATAATTGCTCTCCTTGTCTGCATCCCT
CCTGCAATTATT
						
					

			
		

Sequences
Splice junction sequence	TTGTTGCTGTTCTTTATCACAGACTGACATGGATAGCACCAACCTGTATGCGTACATCTCAATA ATTGCTCTCCTTGTCTGCATCCCTCCTGCAATTATTccgatcaactcaacggttctgaagctac tgttcccagttgctgtctgccatgctattggtcatgtaacaagcaccgtgtcctttgctgctgt agctgtct
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 408 Transcript exons: 8604635-8604755,8604851-8604946,8605768-8605880,8605977- 8606054 CCGATCAACTCAACGGTTCTGAAGCTACTGTTCCCAGTTGCTGTCTGCCATGCTATTGGTCATG TAACAAGCACCGTGTCCTTTGCTGCTGTAGCTGTCTCATTTGCCCACACCATTAAAGCTCTTGA ACCATTTTTCAATGCGGCTGCTTCACAGTTTATCCTTGGCCAGCAAGTTCCATTGACGCTGTGG TTATCTCTTGCTCCGGTTGTGATAGGTGTTTCAATGGCATCTCTCACTGAACTTTCATTCAATT GGACTGGTTTCGTTAATGCCATGATTTCTAATATCTCCTTCACATTACGGAGCGTTTATTCCAA GAAGGCTATGACTGACATGGATAGCACCAACCTGTATGCGTACATCTCAATAATTGCTCTCCTT GTCTGCATCCCTCCTGCAATTATT
Genomic sequence	CCGATCAACTCAACGGTTCTGAAGCTACTGTTCCCAGTTGCTGTCTGCCATGCTATTGGTCATG TAACAAGCACCGTGTCCTTTGCTGCTGTAGCTGTCTCATTTGCCCACACCATTAAAGGTACTGC AACAGTATCTTGATTTTATTTTTGTATTTTTGGCCTTTTGCGTTTCTTCTTTATGCTGAGATTT TTCCTGCAAATAAAATGATTGCAGCTCTTGAACCATTTTTCAATGCGGCTGCTTCACAGTTTAT CCTTGGCCAGCAAGTTCCATTGACGCTGTGGTTATCTCTTGCTCCGGTTGTGATAGGTAATCTC ATTATGCCTTTTGCTTGTGTTCCTAGCAGTACATCACTTGTATCTTAACATCAATGCAAATAAG GACATATGAAAGTAGGTTTCATGGTTGTCAAGGCCCCTGTGCAGGTGATGCCTCAGCATCCAAG CACTCCAGTAACATTTCCATGATCAGATGCCTTGCCTTATGATGAGGGCAAATGAGAAAGAGCC AAATTGATACTTATAGTCCTTTCTGTTGTGCAGAGTGGACACATGTTCCTAGTAGGTTGGGCCT TGTGCCTTCTTTATTTCTTTCTTATTTCTCTCTAATTCCTATAGCGTAATGACCATTTCTTTCT CCTGAATTCTGGTCATCATGATATTACAATGGCATATCAATAAGTGGTGTGCTACACGATGGCA TGCTTAATGAAACCTACCTTATCGTGCGATAAACGCAACTCTGTGTGTGGGCTTTGTGGGGGGG GGGGGGGGGGGTAGGCTGAGCTGCCTTGGTTATTCGGGAGGAGGGAACAGACTAAAGATGAGAT TGAAGAACCTTGGAGAAACTACAGTTTGATTATTTCACTGTTTATTGCTTAATTCCACAGATTC CTCCATGACATGCTTAGATAGGAAATTAATATTAATATTCTAGATATTATATAAGATGACCAGG GAACCAGGGATACTCTTTACTATCAGTTGTCTCAGTAACATTCCTCACAGCCTCCATGCATCTT TAATCATTTCAAGCATATTATGTTTTAGGACTTTCTAGTTGTCTCTATAGCATCTCTACTTCTG TGCATTGGTAATCATTTGGAGTATATTCTGTTTTGAAATAATCAGGTGTTTCAATGGCATCTCT CACTGAACTTTCATTCAATTGGACTGGTTTCGTTAATGCCATGATTTCTAATATCTCCTTCACA TTACGGAGCGTTTATTCCAAGAAGGCTATGGTTTGCTTGTTACCTCTAATGATCTGCATGCATA TTCACTCTTCCTTTTGATACTCCCGTTTCATTTTTTTACTTTGTTGCTGTTCTTTATCACAGAC TGACATGGATAGCACCAACCTGTATGCGTACATCTCAATAATTGCTCTCCTTGTCTGCATCCCT CCTGCAATTATT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_006089* osi_circ_015197 						
					
						PMCS
						0.236639343

Conservation Information
Conserved circRNAs	osi_circ_006089* osi_circ_015197
PMCS	0.236639343

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							8605777-8606051(+)
						
						Potential amino acid sequence
						
							MASLTELSFNWTGFVNAMISNISFTLRSVYSKKAMTDMDSTNLYAYISIIALLVCIPPAIIPIN
STVLKLLFPVAVCHAIGHVTSTVSFAAVAVSFAHTIKALEPFFNAAASQFILGQQVPLTLWLSL
APVVIGVSMASLTELSFNWTGFVNAMISNISFTLRSVYSKKAMTDMDSTNLYAYISIIALLVCI
PPAIIPINSTVLKLLFPVAVCHAIGHVTSTVSFAAVAVSFAHTIKALEPFFNAAASQFILGQQV
PLTLWLSLAPVVIGVSMASLTELSFNWTGFVNAMISNISFTLRSVYSKKAMTDMDSTNLYAYIS
IIALLVCIPPAIIPINSTVLKLLFPVAVCHAIGHVTSTVSFAAVAVSFAHTIKALEPFFNAAAS
QFILGQQVPLTLWLSLAPVVIGVSMASLTELSFNWTGFVNAMISNISFTLRSVYSKKAMTDMDS
TNLYAYISIIALLVCIPPAII(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	8605777-8606051(+)
Potential amino acid sequence	MASLTELSFNWTGFVNAMISNISFTLRSVYSKKAMTDMDSTNLYAYISIIALLVCIPPAIIPIN STVLKLLFPVAVCHAIGHVTSTVSFAAVAVSFAHTIKALEPFFNAAASQFILGQQVPLTLWLSL APVVIGVSMASLTELSFNWTGFVNAMISNISFTLRSVYSKKAMTDMDSTNLYAYISIIALLVCI PPAIIPINSTVLKLLFPVAVCHAIGHVTSTVSFAAVAVSFAHTIKALEPFFNAAASQFILGQQV PLTLWLSLAPVVIGVSMASLTELSFNWTGFVNAMISNISFTLRSVYSKKAMTDMDSTNLYAYIS IIALLVCIPPAIIPINSTVLKLLFPVAVCHAIGHVTSTVSFAAVAVSFAHTIKALEPFFNAAAS QFILGQQVPLTLWLSLAPVVIGVSMASLTELSFNWTGFVNAMISNISFTLRSVYSKKAMTDMDS TNLYAYISIIALLVCIPPAII(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0241150_circ_g.4

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