Plant Circular RNA Database

Detail information of AT1G08680_circ_g.4

			
						 General Information
					
						CircRNA Name
						AT1G08680_circ_g.4
					
						ID in PlantcircBase
						ath_circ_001442
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 2765056-2767031  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder
					
						Parent gene
						
							AT1G08680						
					
						Parent gene annotation
						
							ARF GAP-like zinc finger-containing protein ZIGA4
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT1G08680_circ_g.1 AT1G08680_circ_g.2 AT1G08680_circ_g.3 						
					
						Support reads
						5
					
						Tissues
						inflorescences
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G08680.3:6
AT1G08680.2:5
AT1G08680.1:5
AT1G08680.4:5
AT1G08680.5:5

General Information
CircRNA Name	AT1G08680_circ_g.4
ID in PlantcircBase	ath_circ_001442
Alias	NA
Organism	Arabidpsis thaliana
Position	chr1: 2765056-2767031 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer, PcircRNA_finder
Parent gene	AT1G08680
Parent gene annotation	ARF GAP-like zinc finger-containing protein ZIGA4
Parent gene strand	+
Alternative splicing	AT1G08680_circ_g.1 AT1G08680_circ_g.2 AT1G08680_circ_g.3
Support reads	5
Tissues	inflorescences
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G08680.3:6 AT1G08680.2:5 AT1G08680.1:5 AT1G08680.4:5 AT1G08680.5:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCTTTATTCGCAGGAAGAAGCTTGGCAGCATGTAAATGAACAAAAGTCAGCTAATCCATTTGAT
CTCCCCTATGATTCTGAGTTCGACTCAAATGACATGgaccatgtaagttctgaagatatgacac
gacgggccaactcctatcattcttactcccaaagccctccttacgattatcagtatgaagagcg
ccgttatg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1191
Transcript exons: 2765056-2765200,2765327-2765451,2765576-2766175,2766506-
2766643,2766726-2766821,2766945-2767031
GACCATGTAAGTTCTGAAGATATGACACGACGGGCCAACTCCTATCATTCTTACTCCCAAAGCC
CTCCTTACGATTATCAGTATGAAGAGCGCCGTTATGGGAAAATACCCTTGGGATTTACCGGCAA
GTCTGCTTCAGTGAAAGGAGATCCGTTCAGGTCTGATATACAGTCACCAAATTTTCAGCAGGAA
GCTGAATTTCGTAGTCCCCAGTTTCAGCATTCAAATGCCCCTCCAAGTGAAAACTTATTTCCAG
GCAGGCAACATCAGAGAACTACATCTTCTGGGAGTGTCAGATCAGTTGACAGTAATTTCATGTC
TATCAAGTCATATACTTCGGGTGGTTTAGGGGAAGCCGTATCTGAAAGTCGTCAAAATACAGGA
AGCCAGCAAGGTAAAACATCTAATCATGTTCCTTTAGTAGCAGAGTCGACAAAGGCTCCTATAG
ATTTGTTTCAGTTGCCAGGAGCGCCAGTGGCTCAATCTGTCGATACATTTCAACCTTCAATAGC
ACCCCGATCTCCACCTGTGAATCTTCAACAAGCTCCACAGACATACTCATTTACCCCGGCAAAT
TCGTTTGCTGGAAATTTGGGTCAGCAACCCACTTCAAGACCATCAGAATTGTCTGCGCCTAAGA
ACGAAGGTTGGGCTTCTTTTGACAATCCCATGCCTGCTGCAAAATCTACAAACGTTATTACCTC
CCCTGGAGATTTCCAGTTGGAACTGAAAATTGAAGAGATTCTACAGCCTAGCACAAGCATGCAA
TTGCCACCCTATCCATCAACTGTGGACCAGCATGCTTTGTCGATACCAAGTCCATGGCAGGAAG
ATCTCTCGAATGTTCTAAAAGATGTTGTCGATAACCCGCAGCCGTGGAATGCCTTTCCCGACTC
TATTGAGGCCAATCCTTTGGACAGCAGTAGGAATATTCACCAACAGGTAGATGGAGCAAGTACT
TCGTCATATAACACTGATCACCAGCATTTGGAATCACAAGTTTTAGAGGAATTAAGCAATGATG
GCACCCAAACAACCAGAATCCCTGCTGGCTCTTCTGCTTTTGGTTTTCCAGGAAATATTGGCAT
GGCACCATCATACTCGGAAGAAGCTTGGCAGCATGTAAATGAACAAAAGTCAGCTAATCCATTT
GATCTCCCCTATGATTCTGAGTTCGACTCAAATGACATG
Transcript length: 1314
Transcript exons: 2765056-2765451,2765576-2766175,2766509-2766643,2766726-
2766821,2766945-2767031
GACCATGTAAGTTCTGAAGATATGACACGACGGGCCAACTCCTATCATTCTTACTCCCAAAGCC
CTCCTTACGATTATCAGTATGAAGAGCGCCGTTATGGGAAAATACCCTTGGGATTTACCGGCAA
GTCTGCTTCAGTGAAAGGTCTTCATGCAAAAGCCTCTAGTTTTGTATACAGCCCCGGACGTTTT
AGTGATCATATGTTTGAAGACCAATTCTCAAATGAGGACTCAGCTCCAAGGGCTTCAGATTATT
CTGTTTCGAGTGCAGGAGATCCGTTCAGGTCTGATATACAGTCACCAAATTTTCAGCAGGAAGC
TGAATTTCGTAGTCCCCAGTTTCAGCATTCAAATGCCCCTCCAAGTGAAAACTTATTTCCAGGC
AGGCAACATCAGAGAACTACATCTTCTGGGAGTGTCAGATCAGTTGACAGTAATTTCATGTCTA
TCAAGTCATATACTTCGGGTGGTTTAGGGGAAGCCGTATCTGAAAGTCGTCAAAATACAGGAAG
CCAGCAAGGTAAAACATCTAATCATGTTCCTTTAGTAGCAGAGTCGACAAAGGCTCCTATAGAT
TTGTTTCAGTTGCCAGGAGCGCCAGTGGCTCAATCTGTCGATACATTTCAACCTTCAATAGCAC
CCCGATCTCCACCTGTGAATCTTCAACAAGCTCCACAGACATACTCATTTACCCCGGCAAATTC
GTTTGCTGGAAATTTGGGTCAGCAACCCACTTCAAGACCATCAGAATTGTCTGCGCCTAAGAAC
GAAGGTTGGGCTTCTTTTGACAATCCCATGCCTGCTGCAAAATCTACAAACGTTATTACCTCCC
CTGGAGATTTCCAGTTGGAACTGAAAATTGAAGAGATTCTACAGCCTAGCACAAGCATGCAATT
GCCACCCTATCCATCAACTGTGGACCAGCATGCTTTGTCGATACCAAGTCCATGGCAGGAAGAT
CTCTCGAATGTTCTAAAAGATGTTGTCGATAACCCGCCGTGGAATGCCTTTCCCGACTCTATTG
AGGCCAATCCTTTGGACAGCAGTAGGAATATTCACCAACAGGTAGATGGAGCAAGTACTTCGTC
ATATAACACTGATCACCAGCATTTGGAATCACAAGTTTTAGAGGAATTAAGCAATGATGGCACC
CAAACAACCAGAATCCCTGCTGGCTCTTCTGCTTTTGGTTTTCCAGGAAATATTGGCATGGCAC
CATCATACTCGGAAGAAGCTTGGCAGCATGTAAATGAACAAAAGTCAGCTAATCCATTTGATCT
CCCCTATGATTCTGAGTTCGACTCAAATGACATG
Transcript length: 1317
Transcript exons: 2765056-2765451,2765576-2766175,2766506-2766643,2766726-
2766821,2766945-2767031
GACCATGTAAGTTCTGAAGATATGACACGACGGGCCAACTCCTATCATTCTTACTCCCAAAGCC
CTCCTTACGATTATCAGTATGAAGAGCGCCGTTATGGGAAAATACCCTTGGGATTTACCGGCAA
GTCTGCTTCAGTGAAAGGTCTTCATGCAAAAGCCTCTAGTTTTGTATACAGCCCCGGACGTTTT
AGTGATCATATGTTTGAAGACCAATTCTCAAATGAGGACTCAGCTCCAAGGGCTTCAGATTATT
CTGTTTCGAGTGCAGGAGATCCGTTCAGGTCTGATATACAGTCACCAAATTTTCAGCAGGAAGC
TGAATTTCGTAGTCCCCAGTTTCAGCATTCAAATGCCCCTCCAAGTGAAAACTTATTTCCAGGC
AGGCAACATCAGAGAACTACATCTTCTGGGAGTGTCAGATCAGTTGACAGTAATTTCATGTCTA
TCAAGTCATATACTTCGGGTGGTTTAGGGGAAGCCGTATCTGAAAGTCGTCAAAATACAGGAAG
CCAGCAAGGTAAAACATCTAATCATGTTCCTTTAGTAGCAGAGTCGACAAAGGCTCCTATAGAT
TTGTTTCAGTTGCCAGGAGCGCCAGTGGCTCAATCTGTCGATACATTTCAACCTTCAATAGCAC
CCCGATCTCCACCTGTGAATCTTCAACAAGCTCCACAGACATACTCATTTACCCCGGCAAATTC
GTTTGCTGGAAATTTGGGTCAGCAACCCACTTCAAGACCATCAGAATTGTCTGCGCCTAAGAAC
GAAGGTTGGGCTTCTTTTGACAATCCCATGCCTGCTGCAAAATCTACAAACGTTATTACCTCCC
CTGGAGATTTCCAGTTGGAACTGAAAATTGAAGAGATTCTACAGCCTAGCACAAGCATGCAATT
GCCACCCTATCCATCAACTGTGGACCAGCATGCTTTGTCGATACCAAGTCCATGGCAGGAAGAT
CTCTCGAATGTTCTAAAAGATGTTGTCGATAACCCGCAGCCGTGGAATGCCTTTCCCGACTCTA
TTGAGGCCAATCCTTTGGACAGCAGTAGGAATATTCACCAACAGGTAGATGGAGCAAGTACTTC
GTCATATAACACTGATCACCAGCATTTGGAATCACAAGTTTTAGAGGAATTAAGCAATGATGGC
ACCCAAACAACCAGAATCCCTGCTGGCTCTTCTGCTTTTGGTTTTCCAGGAAATATTGGCATGG
CACCATCATACTCGGAAGAAGCTTGGCAGCATGTAAATGAACAAAAGTCAGCTAATCCATTTGA
TCTCCCCTATGATTCTGAGTTCGACTCAAATGACATG
Transcript length: 1323
Transcript exons: 2765056-2765451,2765576-2766175,2766506-2766643,2766720-
2766821,2766945-2767031
GACCATGTAAGTTCTGAAGATATGACACGACGGGCCAACTCCTATCATTCTTACTCCCAAAGCC
CTCCTTACGATTATCAGTATGAAGAGCGCCGTTATGGGAAAATACCCTTGGGATTTACCGGCAA
GTCTGCTTCAGTGAAAGGTCTTCATGCAAAAGCCTCTAGTTTTGTATACAGCCCCGGACGTTTT
AGTGATCATATGTTTGAAGACCAATTCTCAAATGAGGACTCAGCTCCAAGGGCTTCAGATTATT
CTGTTTCGAGTGCAGGAGATCCGTTCAGGTCTGATATACAGTCACCAAATTTTCAGCAGGAAGC
TGAATTTCGTAGTCCCCAGTTTCAGCATTCAAATGCCCCTCCAAGTGAAAACTTATTTCCAGGC
AGGCAACATCAGAGAACTACATCTTCTGGGAGTGTCAGATCAGTTGACAGTAATTTCATGTCTA
TCAAGTCATATACTTCGGGTGGTTTAGGGGAAGCCGTATCTGAAAGTCGTCAAAATACAGGAAG
CCAGCAAGGTAAAACATCTAATCATGTTCCTTTAGTAGCAGAGTCGACAAAGGCTCCTATAGAT
TTGTTTCAGTTGCCAGGAGCGCCAGTGGCTCAATCTGTCGATACATTTCAACCTTCAATAGCAC
CCCGATCTCCACCTGTGAATCTTCAACAAGCTCCACAGACATACTCATTTACCCCGGCAAATTC
GTTTGCTGGAAATTTGGGTCAGCAACCCACTTCAAGACCATCAGAATTGTCTGCGCCTAAGAAC
GAAGGTTGGGCTTCTTTTGACAATCCCATGCCTGCTGCAAAATCTACAAACGTTATTACCTCCC
CTGGAGATTTCCAGTTGGAACTGAAAATTGAAGAGATTCTACAGCCTAGCACAAGCATGCAATT
GCCACCCTATCCATCAACTGTGGACCAGCATGCTTTGTCGATACCAAGTCCATGGCAGGAAGAT
CTCTCGAATGTTCTAAAAGATGTTGTCGATAACCCGCAGCCGTGGAATGCCTTTCCCGACTCTA
TTGAGGCCAATCCTTTGGACAGCAGTAGGAATATTCACCAACAGGTAGATGGAGCAAGTACTTC
GTCATATAACACTGATCACCAGCATTTGGAATCACAAGTTTTAGAGTCACAGGAATTAAGCAAT
GATGGCACCCAAACAACCAGAATCCCTGCTGGCTCTTCTGCTTTTGGTTTTCCAGGAAATATTG
GCATGGCACCATCATACTCGGAAGAAGCTTGGCAGCATGTAAATGAACAAAAGTCAGCTAATCC
ATTTGATCTCCCCTATGATTCTGAGTTCGACTCAAATGACATG
						
					

						Genomic sequence
						
							GACCATGTAAGTTCTGAAGATATGACACGACGGGCCAACTCCTATCATTCTTACTCCCAAAGCC
CTCCTTACGATTATCAGTATGAAGAGCGCCGTTATGGGAAAATACCCTTGGGATTTACCGGCAA
GTCTGCTTCAGTGAAAGGTCTTCATGCAAAAGCCTCTAGTTTTGTATACAGCCCCGGACGTTTT
AGTGATCATATGTTTGAAGACCAATTCTCAAATGAGGACTCAGCTCCAAGGGCTTCAGATTATT
CTGTTTCGAGTGCAGGAGATCCGTTCAGGTCTGATATACAGTCACCAAATTTTCAGCAGGAAGC
TGAATTTCGTAGTCCCCAGTTTCAGCATTCAAATGCCCCTCCAAGTGAAAACTTATTTCCAGGC
AGGCAACATCAGGTAATAATACCCACATCCTCTAGGAATCTTGTTTGTATCTGGGCTAAGAGTT
TTTTTGTTACAATTGTAAATCACCTCCTGGTGGAAAAAGTGAGTTTACCGATGTTCCAATTTCT
TCGTTCAGAGAACTACATCTTCTGGGAGTGTCAGATCAGTTGACAGTAATTTCATGTCTATCAA
GTCATATACTTCGGGTGGTTTAGGGGAAGCCGTATCTGAAAGTCGTCAAAATACAGGAAGCCAG
CAAGGTAAAACATCTAATCATGTTCCTTTAGTAGCAGAGTCGACAAAGGCTCCTATAGATTTGT
TTCAGTTGCCAGGAGCGCCAGTGGCTCAATCTGTCGATACATTTCAACCTTCAATAGCACCCCG
ATCTCCACCTGTGAATCTTCAACAAGCTCCACAGACATACTCATTTACCCCGGCAAATTCGTTT
GCTGGAAATTTGGGTCAGCAACCCACTTCAAGACCATCAGAATTGTCTGCGCCTAAGAACGAAG
GTTGGGCTTCTTTTGACAATCCCATGCCTGCTGCAAAATCTACAAACGTTATTACCTCCCCTGG
AGATTTCCAGTTGGAACTGAAAATTGAAGAGATTCTACAGCCTAGCACAAGCATGCAATTGCCA
CCCTATCCATCAACTGTGGACCAGCATGCTTTGTCGATACCAAGTCCATGGCAGGAAGATCTCT
CGAATGTTCTAAAAGATGTTGTCGATAACCCGGTGAGTCTTAAGTCTTTGCTCTGTCTTTTCAA
TTATATTATCGCGGGTGCAGCATGAGTAAATAAAAAGGAAAATGTTTCATGTGCCACCATCTCA
TCCTTGCATTGACTATGATACTTCTTTCATTCATGAAAATTGTGATGATCCTGTACATGTTGGG
CTCGGCAAACAGGCTGGTCTCATGTTTTATGGAATTTATTGGCCAAGCTGTAATCTGACAAACT
AAATACTGTAGTTACTTATGTCTGAAATAACGGCATGATTCCACAATCAAGATTAGCATTCATA
CTTGGGATGTAATGAACTAACTCCTACCCAACCTGTTTTTAGCAGCCGTGGAATGCCTTTCCCG
ACTCTATTGAGGCCAATCCTTTGGACAGCAGTAGGAATATTCACCAACAGGTAGATGGAGCAAG
TACTTCGTCATATAACACTGATCACCAGCATTTGGAATCACAAGTTTTAGAGGTTGTTGCATTT
TCCCTTATCACGTCAGTGTATTTTGGATGAATCTCTTTGTTGATTCCTCTGTGATGATGTCAAG
TCACAGGAATTAAGCAATGATGGCACCCAAACAACCAGAATCCCTGCTGGCTCTTCTGCTTTTG
GTTTTCCAGGAAATATTGGCATGGCACCATCATACTCGGTACTCCCCTCTTATGGTTTCAGTTA
TGCTTTGCAGTTTTCCCTTATATCCTTATCGACCTCCCTCCTTTTAACTTGCCTATCCATTATC
TAGTCTTTGATCGATTGAGATCTTTATTCGCAGGAAGAAGCTTGGCAGCATGTAAATGAACAAA
AGTCAGCTAATCCATTTGATCTCCCCTATGATTCTGAGTTCGACTCAAATGACATG
						
					

			
		

Sequences
Splice junction sequence	TCTTTATTCGCAGGAAGAAGCTTGGCAGCATGTAAATGAACAAAAGTCAGCTAATCCATTTGAT CTCCCCTATGATTCTGAGTTCGACTCAAATGACATGgaccatgtaagttctgaagatatgacac gacgggccaactcctatcattcttactcccaaagccctccttacgattatcagtatgaagagcg ccgttatg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1191 Transcript exons: 2765056-2765200,2765327-2765451,2765576-2766175,2766506- 2766643,2766726-2766821,2766945-2767031 GACCATGTAAGTTCTGAAGATATGACACGACGGGCCAACTCCTATCATTCTTACTCCCAAAGCC CTCCTTACGATTATCAGTATGAAGAGCGCCGTTATGGGAAAATACCCTTGGGATTTACCGGCAA GTCTGCTTCAGTGAAAGGAGATCCGTTCAGGTCTGATATACAGTCACCAAATTTTCAGCAGGAA GCTGAATTTCGTAGTCCCCAGTTTCAGCATTCAAATGCCCCTCCAAGTGAAAACTTATTTCCAG GCAGGCAACATCAGAGAACTACATCTTCTGGGAGTGTCAGATCAGTTGACAGTAATTTCATGTC TATCAAGTCATATACTTCGGGTGGTTTAGGGGAAGCCGTATCTGAAAGTCGTCAAAATACAGGA AGCCAGCAAGGTAAAACATCTAATCATGTTCCTTTAGTAGCAGAGTCGACAAAGGCTCCTATAG ATTTGTTTCAGTTGCCAGGAGCGCCAGTGGCTCAATCTGTCGATACATTTCAACCTTCAATAGC ACCCCGATCTCCACCTGTGAATCTTCAACAAGCTCCACAGACATACTCATTTACCCCGGCAAAT TCGTTTGCTGGAAATTTGGGTCAGCAACCCACTTCAAGACCATCAGAATTGTCTGCGCCTAAGA ACGAAGGTTGGGCTTCTTTTGACAATCCCATGCCTGCTGCAAAATCTACAAACGTTATTACCTC CCCTGGAGATTTCCAGTTGGAACTGAAAATTGAAGAGATTCTACAGCCTAGCACAAGCATGCAA TTGCCACCCTATCCATCAACTGTGGACCAGCATGCTTTGTCGATACCAAGTCCATGGCAGGAAG ATCTCTCGAATGTTCTAAAAGATGTTGTCGATAACCCGCAGCCGTGGAATGCCTTTCCCGACTC TATTGAGGCCAATCCTTTGGACAGCAGTAGGAATATTCACCAACAGGTAGATGGAGCAAGTACT TCGTCATATAACACTGATCACCAGCATTTGGAATCACAAGTTTTAGAGGAATTAAGCAATGATG GCACCCAAACAACCAGAATCCCTGCTGGCTCTTCTGCTTTTGGTTTTCCAGGAAATATTGGCAT GGCACCATCATACTCGGAAGAAGCTTGGCAGCATGTAAATGAACAAAAGTCAGCTAATCCATTT GATCTCCCCTATGATTCTGAGTTCGACTCAAATGACATG Transcript length: 1314 Transcript exons: 2765056-2765451,2765576-2766175,2766509-2766643,2766726- 2766821,2766945-2767031 GACCATGTAAGTTCTGAAGATATGACACGACGGGCCAACTCCTATCATTCTTACTCCCAAAGCC CTCCTTACGATTATCAGTATGAAGAGCGCCGTTATGGGAAAATACCCTTGGGATTTACCGGCAA GTCTGCTTCAGTGAAAGGTCTTCATGCAAAAGCCTCTAGTTTTGTATACAGCCCCGGACGTTTT AGTGATCATATGTTTGAAGACCAATTCTCAAATGAGGACTCAGCTCCAAGGGCTTCAGATTATT CTGTTTCGAGTGCAGGAGATCCGTTCAGGTCTGATATACAGTCACCAAATTTTCAGCAGGAAGC TGAATTTCGTAGTCCCCAGTTTCAGCATTCAAATGCCCCTCCAAGTGAAAACTTATTTCCAGGC AGGCAACATCAGAGAACTACATCTTCTGGGAGTGTCAGATCAGTTGACAGTAATTTCATGTCTA TCAAGTCATATACTTCGGGTGGTTTAGGGGAAGCCGTATCTGAAAGTCGTCAAAATACAGGAAG CCAGCAAGGTAAAACATCTAATCATGTTCCTTTAGTAGCAGAGTCGACAAAGGCTCCTATAGAT TTGTTTCAGTTGCCAGGAGCGCCAGTGGCTCAATCTGTCGATACATTTCAACCTTCAATAGCAC CCCGATCTCCACCTGTGAATCTTCAACAAGCTCCACAGACATACTCATTTACCCCGGCAAATTC GTTTGCTGGAAATTTGGGTCAGCAACCCACTTCAAGACCATCAGAATTGTCTGCGCCTAAGAAC GAAGGTTGGGCTTCTTTTGACAATCCCATGCCTGCTGCAAAATCTACAAACGTTATTACCTCCC CTGGAGATTTCCAGTTGGAACTGAAAATTGAAGAGATTCTACAGCCTAGCACAAGCATGCAATT GCCACCCTATCCATCAACTGTGGACCAGCATGCTTTGTCGATACCAAGTCCATGGCAGGAAGAT CTCTCGAATGTTCTAAAAGATGTTGTCGATAACCCGCCGTGGAATGCCTTTCCCGACTCTATTG AGGCCAATCCTTTGGACAGCAGTAGGAATATTCACCAACAGGTAGATGGAGCAAGTACTTCGTC ATATAACACTGATCACCAGCATTTGGAATCACAAGTTTTAGAGGAATTAAGCAATGATGGCACC CAAACAACCAGAATCCCTGCTGGCTCTTCTGCTTTTGGTTTTCCAGGAAATATTGGCATGGCAC CATCATACTCGGAAGAAGCTTGGCAGCATGTAAATGAACAAAAGTCAGCTAATCCATTTGATCT CCCCTATGATTCTGAGTTCGACTCAAATGACATG Transcript length: 1317 Transcript exons: 2765056-2765451,2765576-2766175,2766506-2766643,2766726- 2766821,2766945-2767031 GACCATGTAAGTTCTGAAGATATGACACGACGGGCCAACTCCTATCATTCTTACTCCCAAAGCC CTCCTTACGATTATCAGTATGAAGAGCGCCGTTATGGGAAAATACCCTTGGGATTTACCGGCAA GTCTGCTTCAGTGAAAGGTCTTCATGCAAAAGCCTCTAGTTTTGTATACAGCCCCGGACGTTTT AGTGATCATATGTTTGAAGACCAATTCTCAAATGAGGACTCAGCTCCAAGGGCTTCAGATTATT CTGTTTCGAGTGCAGGAGATCCGTTCAGGTCTGATATACAGTCACCAAATTTTCAGCAGGAAGC TGAATTTCGTAGTCCCCAGTTTCAGCATTCAAATGCCCCTCCAAGTGAAAACTTATTTCCAGGC AGGCAACATCAGAGAACTACATCTTCTGGGAGTGTCAGATCAGTTGACAGTAATTTCATGTCTA TCAAGTCATATACTTCGGGTGGTTTAGGGGAAGCCGTATCTGAAAGTCGTCAAAATACAGGAAG CCAGCAAGGTAAAACATCTAATCATGTTCCTTTAGTAGCAGAGTCGACAAAGGCTCCTATAGAT TTGTTTCAGTTGCCAGGAGCGCCAGTGGCTCAATCTGTCGATACATTTCAACCTTCAATAGCAC CCCGATCTCCACCTGTGAATCTTCAACAAGCTCCACAGACATACTCATTTACCCCGGCAAATTC GTTTGCTGGAAATTTGGGTCAGCAACCCACTTCAAGACCATCAGAATTGTCTGCGCCTAAGAAC GAAGGTTGGGCTTCTTTTGACAATCCCATGCCTGCTGCAAAATCTACAAACGTTATTACCTCCC CTGGAGATTTCCAGTTGGAACTGAAAATTGAAGAGATTCTACAGCCTAGCACAAGCATGCAATT GCCACCCTATCCATCAACTGTGGACCAGCATGCTTTGTCGATACCAAGTCCATGGCAGGAAGAT CTCTCGAATGTTCTAAAAGATGTTGTCGATAACCCGCAGCCGTGGAATGCCTTTCCCGACTCTA TTGAGGCCAATCCTTTGGACAGCAGTAGGAATATTCACCAACAGGTAGATGGAGCAAGTACTTC GTCATATAACACTGATCACCAGCATTTGGAATCACAAGTTTTAGAGGAATTAAGCAATGATGGC ACCCAAACAACCAGAATCCCTGCTGGCTCTTCTGCTTTTGGTTTTCCAGGAAATATTGGCATGG CACCATCATACTCGGAAGAAGCTTGGCAGCATGTAAATGAACAAAAGTCAGCTAATCCATTTGA TCTCCCCTATGATTCTGAGTTCGACTCAAATGACATG Transcript length: 1323 Transcript exons: 2765056-2765451,2765576-2766175,2766506-2766643,2766720- 2766821,2766945-2767031 GACCATGTAAGTTCTGAAGATATGACACGACGGGCCAACTCCTATCATTCTTACTCCCAAAGCC CTCCTTACGATTATCAGTATGAAGAGCGCCGTTATGGGAAAATACCCTTGGGATTTACCGGCAA GTCTGCTTCAGTGAAAGGTCTTCATGCAAAAGCCTCTAGTTTTGTATACAGCCCCGGACGTTTT AGTGATCATATGTTTGAAGACCAATTCTCAAATGAGGACTCAGCTCCAAGGGCTTCAGATTATT CTGTTTCGAGTGCAGGAGATCCGTTCAGGTCTGATATACAGTCACCAAATTTTCAGCAGGAAGC TGAATTTCGTAGTCCCCAGTTTCAGCATTCAAATGCCCCTCCAAGTGAAAACTTATTTCCAGGC AGGCAACATCAGAGAACTACATCTTCTGGGAGTGTCAGATCAGTTGACAGTAATTTCATGTCTA TCAAGTCATATACTTCGGGTGGTTTAGGGGAAGCCGTATCTGAAAGTCGTCAAAATACAGGAAG CCAGCAAGGTAAAACATCTAATCATGTTCCTTTAGTAGCAGAGTCGACAAAGGCTCCTATAGAT TTGTTTCAGTTGCCAGGAGCGCCAGTGGCTCAATCTGTCGATACATTTCAACCTTCAATAGCAC CCCGATCTCCACCTGTGAATCTTCAACAAGCTCCACAGACATACTCATTTACCCCGGCAAATTC GTTTGCTGGAAATTTGGGTCAGCAACCCACTTCAAGACCATCAGAATTGTCTGCGCCTAAGAAC GAAGGTTGGGCTTCTTTTGACAATCCCATGCCTGCTGCAAAATCTACAAACGTTATTACCTCCC CTGGAGATTTCCAGTTGGAACTGAAAATTGAAGAGATTCTACAGCCTAGCACAAGCATGCAATT GCCACCCTATCCATCAACTGTGGACCAGCATGCTTTGTCGATACCAAGTCCATGGCAGGAAGAT CTCTCGAATGTTCTAAAAGATGTTGTCGATAACCCGCAGCCGTGGAATGCCTTTCCCGACTCTA TTGAGGCCAATCCTTTGGACAGCAGTAGGAATATTCACCAACAGGTAGATGGAGCAAGTACTTC GTCATATAACACTGATCACCAGCATTTGGAATCACAAGTTTTAGAGTCACAGGAATTAAGCAAT GATGGCACCCAAACAACCAGAATCCCTGCTGGCTCTTCTGCTTTTGGTTTTCCAGGAAATATTG GCATGGCACCATCATACTCGGAAGAAGCTTGGCAGCATGTAAATGAACAAAAGTCAGCTAATCC ATTTGATCTCCCCTATGATTCTGAGTTCGACTCAAATGACATG
Genomic sequence	GACCATGTAAGTTCTGAAGATATGACACGACGGGCCAACTCCTATCATTCTTACTCCCAAAGCC CTCCTTACGATTATCAGTATGAAGAGCGCCGTTATGGGAAAATACCCTTGGGATTTACCGGCAA GTCTGCTTCAGTGAAAGGTCTTCATGCAAAAGCCTCTAGTTTTGTATACAGCCCCGGACGTTTT AGTGATCATATGTTTGAAGACCAATTCTCAAATGAGGACTCAGCTCCAAGGGCTTCAGATTATT CTGTTTCGAGTGCAGGAGATCCGTTCAGGTCTGATATACAGTCACCAAATTTTCAGCAGGAAGC TGAATTTCGTAGTCCCCAGTTTCAGCATTCAAATGCCCCTCCAAGTGAAAACTTATTTCCAGGC AGGCAACATCAGGTAATAATACCCACATCCTCTAGGAATCTTGTTTGTATCTGGGCTAAGAGTT TTTTTGTTACAATTGTAAATCACCTCCTGGTGGAAAAAGTGAGTTTACCGATGTTCCAATTTCT TCGTTCAGAGAACTACATCTTCTGGGAGTGTCAGATCAGTTGACAGTAATTTCATGTCTATCAA GTCATATACTTCGGGTGGTTTAGGGGAAGCCGTATCTGAAAGTCGTCAAAATACAGGAAGCCAG CAAGGTAAAACATCTAATCATGTTCCTTTAGTAGCAGAGTCGACAAAGGCTCCTATAGATTTGT TTCAGTTGCCAGGAGCGCCAGTGGCTCAATCTGTCGATACATTTCAACCTTCAATAGCACCCCG ATCTCCACCTGTGAATCTTCAACAAGCTCCACAGACATACTCATTTACCCCGGCAAATTCGTTT GCTGGAAATTTGGGTCAGCAACCCACTTCAAGACCATCAGAATTGTCTGCGCCTAAGAACGAAG GTTGGGCTTCTTTTGACAATCCCATGCCTGCTGCAAAATCTACAAACGTTATTACCTCCCCTGG AGATTTCCAGTTGGAACTGAAAATTGAAGAGATTCTACAGCCTAGCACAAGCATGCAATTGCCA CCCTATCCATCAACTGTGGACCAGCATGCTTTGTCGATACCAAGTCCATGGCAGGAAGATCTCT CGAATGTTCTAAAAGATGTTGTCGATAACCCGGTGAGTCTTAAGTCTTTGCTCTGTCTTTTCAA TTATATTATCGCGGGTGCAGCATGAGTAAATAAAAAGGAAAATGTTTCATGTGCCACCATCTCA TCCTTGCATTGACTATGATACTTCTTTCATTCATGAAAATTGTGATGATCCTGTACATGTTGGG CTCGGCAAACAGGCTGGTCTCATGTTTTATGGAATTTATTGGCCAAGCTGTAATCTGACAAACT AAATACTGTAGTTACTTATGTCTGAAATAACGGCATGATTCCACAATCAAGATTAGCATTCATA CTTGGGATGTAATGAACTAACTCCTACCCAACCTGTTTTTAGCAGCCGTGGAATGCCTTTCCCG ACTCTATTGAGGCCAATCCTTTGGACAGCAGTAGGAATATTCACCAACAGGTAGATGGAGCAAG TACTTCGTCATATAACACTGATCACCAGCATTTGGAATCACAAGTTTTAGAGGTTGTTGCATTT TCCCTTATCACGTCAGTGTATTTTGGATGAATCTCTTTGTTGATTCCTCTGTGATGATGTCAAG TCACAGGAATTAAGCAATGATGGCACCCAAACAACCAGAATCCCTGCTGGCTCTTCTGCTTTTG GTTTTCCAGGAAATATTGGCATGGCACCATCATACTCGGTACTCCCCTCTTATGGTTTCAGTTA TGCTTTGCAGTTTTCCCTTATATCCTTATCGACCTCCCTCCTTTTAACTTGCCTATCCATTATC TAGTCTTTGATCGATTGAGATCTTTATTCGCAGGAAGAAGCTTGGCAGCATGTAAATGAACAAA AGTCAGCTAATCCATTTGATCTCCCCTATGATTCTGAGTTCGACTCAAATGACATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.191547953

Conservation Information
Conserved circRNAs	NA
PMCS	0.191547953

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							2765077-2767028(+)
						
					

						Potential amino acid sequence
						
							MTRRANSYHSYSQSPPYDYQYEERRYGKIPLGFTGKSASVKGLHAKASSFVYSPGRFSDHMFED
QFSNEDSAPRASDYSVSSAGDPFRSDIQSPNFQQEAEFRSPQFQHSNAPPSENLFPGRQHQRTT
SSGSVRSVDSNFMSIKSYTSGGLGEAVSESRQNTGSQQGKTSNHVPLVAESTKAPIDLFQLPGA
PVAQSVDTFQPSIAPRSPPVNLQQAPQTYSFTPANSFAGNLGQQPTSRPSELSAPKNEGWASFD
NPMPAAKSTNVITSPGDFQLELKIEEILQPSTSMQLPPYPSTVDQHALSIPSPWQEDLSNVLKD
VVDNPQPWNAFPDSIEANPLDSSRNIHQQVDGASTSSYNTDHQHLESQVLESQELSNDGTQTTR
IPAGSSAFGFPGNIGMAPSYSEEAWQHVNEQKSANPFDLPYDSEFDSNDMDHVSSEDMTRRANS
YHSYSQSPPYDYQYEERRYGKIPLGFTGKSASVKGLHAKASSFVYSPGRFSDHMFEDQFSNEDS
APRASDYSVSSAGDPFRSDIQSPNFQQEAEFRSPQFQHSNAPPSENLFPGRQHQRTTSSGSVRS
VDSNFMSIKSYTSGGLGEAVSESRQNTGSQQGKTSNHVPLVAESTKAPIDLFQLPGAPVAQSVD
TFQPSIAPRSPPVNLQQAPQTYSFTPANSFAGNLGQQPTSRPSELSAPKNEGWASFDNPMPAAK
STNVITSPGDFQLELKIEEILQPSTSMQLPPYPSTVDQHALSIPSPWQEDLSNVLKDVVDNPQP
WNAFPDSIEANPLDSSRNIHQQVDGASTSSYNTDHQHLESQVLESQELSNDGTQTTRIPAGSSA
FGFPGNIGMAPSYSEEAWQHVNEQKSANPFDLPYDSEFDSNDMDHVSSEDMTRRANSYHSYSQS
PPYDYQYEERRYGKIPLGFTGKSASVKGLHAKASSFVYSPGRFSDHMFEDQFSNEDSAPRASDY
SVSSAGDPFRSDIQSPNFQQEAEFRSPQFQHSNAPPSENLFPGRQHQRTTSSGSVRSVDSNFMS
IKSYTSGGLGEAVSESRQNTGSQQGKTSNHVPLVAESTKAPIDLFQLPGAPVAQSVDTFQPSIA
PRSPPVNLQQAPQTYSFTPANSFAGNLGQQPTSRPSELSAPKNEGWASFDNPMPAAKSTNVITS
PGDFQLELKIEEILQPSTSMQLPPYPSTVDQHALSIPSPWQEDLSNVLKDVVDNPQPWNAFPDS
IEANPLDSSRNIHQQVDGASTSSYNTDHQHLESQVLESQELSNDGTQTTRIPAGSSAFGFPGNI
GMAPSYSEEAWQHVNEQKSANPFDLPYDSEFDSNDMDHVSSEDMTRRANSYHSYSQSPPYDYQY
EERRYGKIPLGFTGKSASVKGLHAKASSFVYSPGRFSDHMFEDQFSNEDSAPRASDYSVSSAGD
PFRSDIQSPNFQQEAEFRSPQFQHSNAPPSENLFPGRQHQRTTSSGSVRSVDSNFMSIKSYTSG
GLGEAVSESRQNTGSQQGKTSNHVPLVAESTKAPIDLFQLPGAPVAQSVDTFQPSIAPRSPPVN
LQQAPQTYSFTPANSFAGNLGQQPTSRPSELSAPKNEGWASFDNPMPAAKSTNVITSPGDFQLE
LKIEEILQPSTSMQLPPYPSTVDQHALSIPSPWQEDLSNVLKDVVDNPQPWNAFPDSIEANPLD
SSRNIHQQVDGASTSSYNTDHQHLESQVLESQELSNDGTQTTRIPAGSSAFGFPGNIGMAPSYS
EEAWQHVNEQKSANPFDLPYDSEFDSNDM(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	2765077-2767028(+)
Potential amino acid sequence	MTRRANSYHSYSQSPPYDYQYEERRYGKIPLGFTGKSASVKGLHAKASSFVYSPGRFSDHMFED QFSNEDSAPRASDYSVSSAGDPFRSDIQSPNFQQEAEFRSPQFQHSNAPPSENLFPGRQHQRTT SSGSVRSVDSNFMSIKSYTSGGLGEAVSESRQNTGSQQGKTSNHVPLVAESTKAPIDLFQLPGA PVAQSVDTFQPSIAPRSPPVNLQQAPQTYSFTPANSFAGNLGQQPTSRPSELSAPKNEGWASFD NPMPAAKSTNVITSPGDFQLELKIEEILQPSTSMQLPPYPSTVDQHALSIPSPWQEDLSNVLKD VVDNPQPWNAFPDSIEANPLDSSRNIHQQVDGASTSSYNTDHQHLESQVLESQELSNDGTQTTR IPAGSSAFGFPGNIGMAPSYSEEAWQHVNEQKSANPFDLPYDSEFDSNDMDHVSSEDMTRRANS YHSYSQSPPYDYQYEERRYGKIPLGFTGKSASVKGLHAKASSFVYSPGRFSDHMFEDQFSNEDS APRASDYSVSSAGDPFRSDIQSPNFQQEAEFRSPQFQHSNAPPSENLFPGRQHQRTTSSGSVRS VDSNFMSIKSYTSGGLGEAVSESRQNTGSQQGKTSNHVPLVAESTKAPIDLFQLPGAPVAQSVD TFQPSIAPRSPPVNLQQAPQTYSFTPANSFAGNLGQQPTSRPSELSAPKNEGWASFDNPMPAAK STNVITSPGDFQLELKIEEILQPSTSMQLPPYPSTVDQHALSIPSPWQEDLSNVLKDVVDNPQP WNAFPDSIEANPLDSSRNIHQQVDGASTSSYNTDHQHLESQVLESQELSNDGTQTTRIPAGSSA FGFPGNIGMAPSYSEEAWQHVNEQKSANPFDLPYDSEFDSNDMDHVSSEDMTRRANSYHSYSQS PPYDYQYEERRYGKIPLGFTGKSASVKGLHAKASSFVYSPGRFSDHMFEDQFSNEDSAPRASDY SVSSAGDPFRSDIQSPNFQQEAEFRSPQFQHSNAPPSENLFPGRQHQRTTSSGSVRSVDSNFMS IKSYTSGGLGEAVSESRQNTGSQQGKTSNHVPLVAESTKAPIDLFQLPGAPVAQSVDTFQPSIA PRSPPVNLQQAPQTYSFTPANSFAGNLGQQPTSRPSELSAPKNEGWASFDNPMPAAKSTNVITS PGDFQLELKIEEILQPSTSMQLPPYPSTVDQHALSIPSPWQEDLSNVLKDVVDNPQPWNAFPDS IEANPLDSSRNIHQQVDGASTSSYNTDHQHLESQVLESQELSNDGTQTTRIPAGSSAFGFPGNI GMAPSYSEEAWQHVNEQKSANPFDLPYDSEFDSNDMDHVSSEDMTRRANSYHSYSQSPPYDYQY EERRYGKIPLGFTGKSASVKGLHAKASSFVYSPGRFSDHMFEDQFSNEDSAPRASDYSVSSAGD PFRSDIQSPNFQQEAEFRSPQFQHSNAPPSENLFPGRQHQRTTSSGSVRSVDSNFMSIKSYTSG GLGEAVSESRQNTGSQQGKTSNHVPLVAESTKAPIDLFQLPGAPVAQSVDTFQPSIAPRSPPVN LQQAPQTYSFTPANSFAGNLGQQPTSRPSELSAPKNEGWASFDNPMPAAKSTNVITSPGDFQLE LKIEEILQPSTSMQLPPYPSTVDQHALSIPSPWQEDLSNVLKDVVDNPQPWNAFPDSIEANPLD SSRNIHQQVDGASTSSYNTDHQHLESQVLESQELSNDGTQTTRIPAGSSAFGFPGNIGMAPSYS EEAWQHVNEQKSANPFDLPYDSEFDSNDM(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT1G08680_circ_g.4

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