Plant Circular RNA Database

Detail information of Os01g0337600_circ_g.8

			
						 General Information
					
						CircRNA Name
						Os01g0337600_circ_g.8
					
						ID in PlantcircBase
						osa_circ_001623
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 13256159-13260134  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os01g0337600						
					
						Parent gene annotation
						
							Similar to predicted protein. (Os01t0337600-01);Similar to bindi
ng. (Os01t0337600-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os01g0337600_circ_g.5 Os01g0337600_circ_g.6 Os01g0337600_circ_g.7 Os01g0337600_circ_g.9 Os01g0337600_circ_g.10 Os01g0337600_circ_g.11 Os01g0337600_circ_g.12 Os01g0337600_circ_g.13 Os01g0337600_circ_g.14 Os01g0337600_circ_g.15 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0337600-01:9
Os01t0337600-02:9

General Information
CircRNA Name	Os01g0337600_circ_g.8
ID in PlantcircBase	osa_circ_001623
Alias	NA
Organism	Oryza sativa
Position	chr1: 13256159-13260134 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os01g0337600
Parent gene annotation	Similar to predicted protein. (Os01t0337600-01);Similar to bindi ng. (Os01t0337600-02)
Parent gene strand	-
Alternative splicing	Os01g0337600_circ_g.5 Os01g0337600_circ_g.6 Os01g0337600_circ_g.7 Os01g0337600_circ_g.9 Os01g0337600_circ_g.10 Os01g0337600_circ_g.11 Os01g0337600_circ_g.12 Os01g0337600_circ_g.13 Os01g0337600_circ_g.14 Os01g0337600_circ_g.15
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0337600-01:9 Os01t0337600-02:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAACGACACAGGACAGTACCTCAAGGAAGTCAATATTTACATGCCCTGTGCCCCGATCATCCCA
TTTCCCTCCATCAGTCAAACGGTATACTTTCACACGattcaagggcacctatgatgtcaagaat
aaactcatctgagaaaatcttgtcaaagattgatgaactgttcagcaatactgcagaatgataa
acagtaaa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ATTCAAGGGCACCTATGATGTCAAGAATAAACTCATCTGAGAAAATCTTGTCAAAGATTGATGA
ACTGTTCAGCAATACTGCAGAATGATAAACAGTAAATACTAATCTGTGAAATTTAGAAAACAAA
ACTTTCATACAGATATGTACTTACTGATTCCCCTGACTAATTTGAAGATCATGTGAAGATCATC
TAAGTTCTCTAAATCCTCGCATATTCGAAAAATGTCCAGTAACTTTGGGAAAAACTCGCGCTGC
AAGAATTTGTAAATGCAGTAGTTAAAGATTTCTAGTCAAACAGGACTAATCAAGTAATCATACC
CAAAATAACAAGTATAATCATCATATGTCACTTCCAAGTGTGCCACTGTTGCTTCCACCATGCC
ATGTAAACAAAAAGAAGATGGAATGTCAACAGGAGAACACCACACCCCAGTCATCTCTGTTCTT
ATTACGAATAGCCTTTAGATCTAATAGCATACTGTGTGCGACCCATGGAAGCTGTCCTTCAACA
TAAAGTAAGACAGTAAGACTATAAGAGGCAAGGTTGCTCCCGTCCCACATTCCTTACCAAAGAG
ATGTCTTTGGCTTTGATGATTCAATTAACTTCTAGTTATACCTTCTATATAGTTACAACCCACT
AAGCCTAAAGCTCAACATGCAAACAACCTAATATCTCGTTATTTTTCTCCTACCTTCCACTTCT
TGTGATGCAAATCTTGGCCAGCAATCTAATATTTCATCTACAATCTCCTACATAGTCTACTAAA
TTTATTTCTCTACAAACATGGCTTGGCAAACCAGTTTTATTTGTTGTTAATAACTAATATCCGT
TTTACTCCTGGCTTGGTTGCTGGAAAAAAAAACATATTGAAGATTACTTAGTAATTCCCACAGC
AAAGCTCGGAGAATCACCTAGTAAATATAGTACATGCAACCATCCCAGGCACAAAGATGAGGAC
TTACATCTTGTGTTATCAACTCTGCCACGCGCATCTGATCTGTAATGCCACCCTCCAATATAGT
CTGCAGATTTAGATGAACAATATTTTTGTTGTCAGCAAGGATTCTCAAATTTGCAGCAGAAAAT
GTAGGTCACCCAAACACTAACTGTAAAGTGAATGTCAAATTTCAGGATTGATATAGCCAGCATG
CAAGTTACTCTGCACCCATTCTGCTGAGGCTTCCACAGCACTCAAAAGAATTCTCCACAGATAT
TAATAATATACATAAGTAGATGATCAGAAGAACAAGCAAAGGCTTATAGCCTTATAGGATGAAC
ACAAGGTTCATGATTTTTCATATTTACTCGTCAAGGAGATGAGACTTCAAAACATGGTCAAGCA
AAGAAAAAAGACTAGCAAAAAAATAGAAGAATTTTTGCTATTGAGCATGAAAGGTAAGATTAAT
AAAAAAAATGACTTCGTATAGGAACAAAAAAAAAATCCAAACCTTTAAAATTAAAGGAAGATTG
GATAACTCAACAGGTGGAAGCTCCCTCAGCTCACCATTAACGGAGCGGAAGGATTCATCTGCAA
TGAAACCTACAATTAGTTACAACAATACTAATGAAAACAGTACTATCAAAGGCCTCACAACCAT
AGCAATGTCATGCATTTAGCACCAAGGATAAATGATTATTCAAGAAAAAGCACAATTAAGACCG
TAGGGTGATCTTTCAAAGCTCTCAAGATTTTCTCAGGGGTAAATTCTAAGACTTGGAAGTGGAC
AGATAGCTTGTCACTGGTCTTTTATCTTAGTAACACATTTGATAACAGCCATGTTTGTTCTGAG
TTCTGACCATTTCCTTAACACCTCAAGTGAGTTTTTTGCCTTCCATCGCATTGGAAAATGTGAA
ATGCTAGATGGCAACAGCCAACAGGGATATGTGCAACTGCAATCCAGTGTACTCTCCAAGTGTG
TCAAAAGAACAACACGGCTTTGATAGGTGAATGCCATATTAAGGACTTCCAATCTCGTCATCAA
GTCATTCAAATATTTATTCATGTCGGCCAGCCCATGTCGTATGTTAAGTCAATTATTAGGAAGG
ACTCAAATAACGATGGGAGACTCTTTAGTTAGGAGATTCAGAAAATTGTTAGGGAAACTAGAGA
AGGTCAGATGAGTTTCCATGGTATTAGAGATTAGTTTCTTAGGGGTGAAGTAAGTCCCCCTATA
TATAAAGGAGATGAGTTTCCATGTGAATCAAGAGATGAAAATATAAAGTTAGTCCAATGTTCAT
CAGAGCATCTCTAGTTGGGGAAAAGCCCTGCCGGTCTAAAGATGGGGAGTGCCCTATTCACTGG
TCTTCAAACCTTAACCTCAAGCCAATGCACACTAAACAATACAAAACAGTCCTAATTGAGTAAT
TTGTCAAATTAATACTGCAAGATTGAGTAATGCAGTACCACAGCTGGTAACTTACACCACTAAC
GTAGGGCAGATTTAAGTTATAGCAACAAAAAGGCCCTTTTCAATAACATAACGCCCAGGAAGAA
ATGGATAATTTGGTTACAAAATTAAGCAGTGCAGCACGCATTTAGCAAAGTGGGATCTACCATT
TGAATGCAATACTCTAGAGGCTTCTAGAGAAACCGAAGTTGGACGAGGACCGACTTCAAGAGCT
GCAGGAAATAGTTAAAAGTAAAACAAGGAGGGAAACAAATGAGCAGTGATGGGCTTTAAACAAC
TCACCACCAAGGTTATTAAACTGAATGTTTCTCTGAATGTCACATATGTTGTCCCTGCAGAGAA
CCACCAAAAGCCAATGATACAAAATAAGATATCAGTGCATAGTTGAAGGAAATGGTAATTACTA
ATTAGATCAGCAATACCATATGTATGAGCACCCAGCAGCTTCCTGAAAGCTCAACGCTAATTCT
GTTGCTACTTCTGGATCCCTCCATGAGATGATTGTATCTAATAAAGAAAATTGTTACAGGAAGT
TATTTATATATATGAATGGTTAACTTGTAAAAAAAACAAGTTTAGTAGTTCACCTTCTTGCTTT
CTGTAGATATCTTCAGAAGTAATGTTGTGCATGAGCAATGTTTCATTGTCTTCTTCATCCAAAA
CAGTCAAACCAAGTTCTTTAGAATCCTGGAATCGACCCCGAGAAAAGGTGTGTGTAAGCTCCAA
AAAAGTTAAGGTAACACACTAACAGAACACCATATTACCATAGAGTAGGACTGGTTATCAACTT
CATGTTCTAACTCCAGCTCATGTATTTAAATATAAATGGACATGTCTTACAGATCTTAATGTTC
TATAATCAACATTGCTAGGGTGTGTAAACAAGGTAACTGTAGCTCAAACATAATACCCAATTTG
TGGTGGATTGTTCCACCTGCAGATGTGGGTAAGCTTATTTCCGTAGTTTAAATAGTTTATTAGT
TTGGACGGCTTATGAACTTAGAAGAATCAGCAAATCCAAGTTAACACCAATCAACGAAGCAAGG
ACTAAAGCTCAACTAATATGCTAATGTAACCTCCCCTGGTTTTGAGTGGATTTTCACAAATTTG
GACCTTGCAGGGTTGCGGTAGTACCATGAGATGAATCTAAGCCATGTGTGGCTTCTAATGTATA
AGGTTACACAAAGCAGAAAATTATTGGCATAAAATAGGCTACTATTTCCACTAGTTTTAACATA
AATATAAACACTTTGACCAACAAGGAAGTATAGTGATCCACAACTTTTGTCATTGAATAAAACT
AGAAAAGGTGTTAAACAGTGTAGCTGATCATTTTATAATGGCATGAGGAATGACCCACAGCATG
TTGATAAAGGATAAACAGAAAACTAAAAGTAGAGTTGCATAAGAGTAAACTAACAATGCTCGCT
GGACACTTGTTTGACAATAATATATAGTAGAACCACTAACGACACAGGACAGTACCTCAAGGAA
GTCAATATTTACATGCCCTGTGCCCCGATCATCCCATTTCCCTCCATCAGTCAAACGGTATACT
TTCACACG
						
					

			
		

Sequences
Splice junction sequence	TAACGACACAGGACAGTACCTCAAGGAAGTCAATATTTACATGCCCTGTGCCCCGATCATCCCA TTTCCCTCCATCAGTCAAACGGTATACTTTCACACGattcaagggcacctatgatgtcaagaat aaactcatctgagaaaatcttgtcaaagattgatgaactgttcagcaatactgcagaatgataa acagtaaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ATTCAAGGGCACCTATGATGTCAAGAATAAACTCATCTGAGAAAATCTTGTCAAAGATTGATGA ACTGTTCAGCAATACTGCAGAATGATAAACAGTAAATACTAATCTGTGAAATTTAGAAAACAAA ACTTTCATACAGATATGTACTTACTGATTCCCCTGACTAATTTGAAGATCATGTGAAGATCATC TAAGTTCTCTAAATCCTCGCATATTCGAAAAATGTCCAGTAACTTTGGGAAAAACTCGCGCTGC AAGAATTTGTAAATGCAGTAGTTAAAGATTTCTAGTCAAACAGGACTAATCAAGTAATCATACC CAAAATAACAAGTATAATCATCATATGTCACTTCCAAGTGTGCCACTGTTGCTTCCACCATGCC ATGTAAACAAAAAGAAGATGGAATGTCAACAGGAGAACACCACACCCCAGTCATCTCTGTTCTT ATTACGAATAGCCTTTAGATCTAATAGCATACTGTGTGCGACCCATGGAAGCTGTCCTTCAACA TAAAGTAAGACAGTAAGACTATAAGAGGCAAGGTTGCTCCCGTCCCACATTCCTTACCAAAGAG ATGTCTTTGGCTTTGATGATTCAATTAACTTCTAGTTATACCTTCTATATAGTTACAACCCACT AAGCCTAAAGCTCAACATGCAAACAACCTAATATCTCGTTATTTTTCTCCTACCTTCCACTTCT TGTGATGCAAATCTTGGCCAGCAATCTAATATTTCATCTACAATCTCCTACATAGTCTACTAAA TTTATTTCTCTACAAACATGGCTTGGCAAACCAGTTTTATTTGTTGTTAATAACTAATATCCGT TTTACTCCTGGCTTGGTTGCTGGAAAAAAAAACATATTGAAGATTACTTAGTAATTCCCACAGC AAAGCTCGGAGAATCACCTAGTAAATATAGTACATGCAACCATCCCAGGCACAAAGATGAGGAC TTACATCTTGTGTTATCAACTCTGCCACGCGCATCTGATCTGTAATGCCACCCTCCAATATAGT CTGCAGATTTAGATGAACAATATTTTTGTTGTCAGCAAGGATTCTCAAATTTGCAGCAGAAAAT GTAGGTCACCCAAACACTAACTGTAAAGTGAATGTCAAATTTCAGGATTGATATAGCCAGCATG CAAGTTACTCTGCACCCATTCTGCTGAGGCTTCCACAGCACTCAAAAGAATTCTCCACAGATAT TAATAATATACATAAGTAGATGATCAGAAGAACAAGCAAAGGCTTATAGCCTTATAGGATGAAC ACAAGGTTCATGATTTTTCATATTTACTCGTCAAGGAGATGAGACTTCAAAACATGGTCAAGCA AAGAAAAAAGACTAGCAAAAAAATAGAAGAATTTTTGCTATTGAGCATGAAAGGTAAGATTAAT AAAAAAAATGACTTCGTATAGGAACAAAAAAAAAATCCAAACCTTTAAAATTAAAGGAAGATTG GATAACTCAACAGGTGGAAGCTCCCTCAGCTCACCATTAACGGAGCGGAAGGATTCATCTGCAA TGAAACCTACAATTAGTTACAACAATACTAATGAAAACAGTACTATCAAAGGCCTCACAACCAT AGCAATGTCATGCATTTAGCACCAAGGATAAATGATTATTCAAGAAAAAGCACAATTAAGACCG TAGGGTGATCTTTCAAAGCTCTCAAGATTTTCTCAGGGGTAAATTCTAAGACTTGGAAGTGGAC AGATAGCTTGTCACTGGTCTTTTATCTTAGTAACACATTTGATAACAGCCATGTTTGTTCTGAG TTCTGACCATTTCCTTAACACCTCAAGTGAGTTTTTTGCCTTCCATCGCATTGGAAAATGTGAA ATGCTAGATGGCAACAGCCAACAGGGATATGTGCAACTGCAATCCAGTGTACTCTCCAAGTGTG TCAAAAGAACAACACGGCTTTGATAGGTGAATGCCATATTAAGGACTTCCAATCTCGTCATCAA GTCATTCAAATATTTATTCATGTCGGCCAGCCCATGTCGTATGTTAAGTCAATTATTAGGAAGG ACTCAAATAACGATGGGAGACTCTTTAGTTAGGAGATTCAGAAAATTGTTAGGGAAACTAGAGA AGGTCAGATGAGTTTCCATGGTATTAGAGATTAGTTTCTTAGGGGTGAAGTAAGTCCCCCTATA TATAAAGGAGATGAGTTTCCATGTGAATCAAGAGATGAAAATATAAAGTTAGTCCAATGTTCAT CAGAGCATCTCTAGTTGGGGAAAAGCCCTGCCGGTCTAAAGATGGGGAGTGCCCTATTCACTGG TCTTCAAACCTTAACCTCAAGCCAATGCACACTAAACAATACAAAACAGTCCTAATTGAGTAAT TTGTCAAATTAATACTGCAAGATTGAGTAATGCAGTACCACAGCTGGTAACTTACACCACTAAC GTAGGGCAGATTTAAGTTATAGCAACAAAAAGGCCCTTTTCAATAACATAACGCCCAGGAAGAA ATGGATAATTTGGTTACAAAATTAAGCAGTGCAGCACGCATTTAGCAAAGTGGGATCTACCATT TGAATGCAATACTCTAGAGGCTTCTAGAGAAACCGAAGTTGGACGAGGACCGACTTCAAGAGCT GCAGGAAATAGTTAAAAGTAAAACAAGGAGGGAAACAAATGAGCAGTGATGGGCTTTAAACAAC TCACCACCAAGGTTATTAAACTGAATGTTTCTCTGAATGTCACATATGTTGTCCCTGCAGAGAA CCACCAAAAGCCAATGATACAAAATAAGATATCAGTGCATAGTTGAAGGAAATGGTAATTACTA ATTAGATCAGCAATACCATATGTATGAGCACCCAGCAGCTTCCTGAAAGCTCAACGCTAATTCT GTTGCTACTTCTGGATCCCTCCATGAGATGATTGTATCTAATAAAGAAAATTGTTACAGGAAGT TATTTATATATATGAATGGTTAACTTGTAAAAAAAACAAGTTTAGTAGTTCACCTTCTTGCTTT CTGTAGATATCTTCAGAAGTAATGTTGTGCATGAGCAATGTTTCATTGTCTTCTTCATCCAAAA CAGTCAAACCAAGTTCTTTAGAATCCTGGAATCGACCCCGAGAAAAGGTGTGTGTAAGCTCCAA AAAAGTTAAGGTAACACACTAACAGAACACCATATTACCATAGAGTAGGACTGGTTATCAACTT CATGTTCTAACTCCAGCTCATGTATTTAAATATAAATGGACATGTCTTACAGATCTTAATGTTC TATAATCAACATTGCTAGGGTGTGTAAACAAGGTAACTGTAGCTCAAACATAATACCCAATTTG TGGTGGATTGTTCCACCTGCAGATGTGGGTAAGCTTATTTCCGTAGTTTAAATAGTTTATTAGT TTGGACGGCTTATGAACTTAGAAGAATCAGCAAATCCAAGTTAACACCAATCAACGAAGCAAGG ACTAAAGCTCAACTAATATGCTAATGTAACCTCCCCTGGTTTTGAGTGGATTTTCACAAATTTG GACCTTGCAGGGTTGCGGTAGTACCATGAGATGAATCTAAGCCATGTGTGGCTTCTAATGTATA AGGTTACACAAAGCAGAAAATTATTGGCATAAAATAGGCTACTATTTCCACTAGTTTTAACATA AATATAAACACTTTGACCAACAAGGAAGTATAGTGATCCACAACTTTTGTCATTGAATAAAACT AGAAAAGGTGTTAAACAGTGTAGCTGATCATTTTATAATGGCATGAGGAATGACCCACAGCATG TTGATAAAGGATAAACAGAAAACTAAAAGTAGAGTTGCATAAGAGTAAACTAACAATGCTCGCT GGACACTTGTTTGACAATAATATATAGTAGAACCACTAACGACACAGGACAGTACCTCAAGGAA GTCAATATTTACATGCCCTGTGCCCCGATCATCCCATTTCCCTCCATCAGTCAAACGGTATACT TTCACACG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.107304483

Conservation Information
Conserved circRNAs	NA
PMCS	0.107304483

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							13260076-13256173(+)
13259189-13256195(+)
13259200-13260111(-)
						
						Potential amino acid sequence
						
							MPCAPIIPFPSISQTVYFHTIQGHL*(+)
MLCMSNVSLSSSSKTVKPSSLESSRKSIFTCPVPRSSHFPPSVKRYTFTRFKGTYDVKNKLI*(
+)
MHNITSEDIYRKQEDTIISWRDPEVATELALSFQEAAGCSYIWDNICDIQRNIQFNNLGVGPRP
TSVSLEASRVLHSNDESFRSVNGELRELPPVELSNLPLILKTILEGGITDQMRVAELITQDREF
FPKLLDIFRICEDLENLDDLHMIFKLVRGIILLNSSSIFDKIFSDEFILDIIGALESCESIPFD
*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	13260076-13256173(+) 13259189-13256195(+) 13259200-13260111(-)
Potential amino acid sequence	MPCAPIIPFPSISQTVYFHTIQGHL(+) MLCMSNVSLSSSSKTVKPSSLESSRKSIFTCPVPRSSHFPPSVKRYTFTRFKGTYDVKNKLI( +) MHNITSEDIYRKQEDTIISWRDPEVATELALSFQEAAGCSYIWDNICDIQRNIQFNNLGVGPRP TSVSLEASRVLHSNDESFRSVNGELRELPPVELSNLPLILKTILEGGITDQMRVAELITQDREF FPKLLDIFRICEDLENLDDLHMIFKLVRGIILLNSSSIFDKIFSDEFILDIIGALESCESIPFD *(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os01g0337600_circ_g.8

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