Plant Circular RNA Database

Detail information of BGIOSGA027410_circ_g.1

			
						 General Information
					
						CircRNA Name
						BGIOSGA027410_circ_g.1
					
						ID in PlantcircBase
						osi_circ_007617
					
						Alias
						8:8770326|8774517
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr8: 8770326-8774517  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							BGIOSGA027410						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							BGIOSGA027410_circ_g.2 BGIOSGA027410_circ_g.3 BGIOSGA027410_circ_g.4 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA027410-TA:5

General Information
CircRNA Name	BGIOSGA027410_circ_g.1
ID in PlantcircBase	osi_circ_007617
Alias	8:8770326\|8774517
Organism	Oryza sativa ssp. indica
Position	chr8: 8770326-8774517 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	e-circRNA
Identification method	find_circ
Parent gene	BGIOSGA027410
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	BGIOSGA027410_circ_g.2 BGIOSGA027410_circ_g.3 BGIOSGA027410_circ_g.4
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA027410-TA:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CATTCCTTAGTAGCAAGATGTAGTGGCGTCCCACATTCATCAGCTACCGGATCAATATCAGCCC
CCTTTGCCAGCAACATTTCTATCATTTCACAATCTCcttagtgtagaacactgaagcagaaatg
taatcttctctatcgactgctttattcccagatgtcttcaactcttctattttctttttattca
catgttga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTAGTGTAGAACACTGAAGCAGAAATGTAATCTTCTCTATCGACTGCTTTATTCCCAGATGTC
TTCAACTCTTCTATTTTCTTTTTATTCACATGTTGATCCTGAACCATAGATAATATTAAAGATG
TAGACATGAGAAGAATGGAAAAATGCTATAATAGTAAAGAAACTACATAGGACTGTTCTGTAAA
TGTTTGGGAAAACATGGTCTTGATTTGGCACAAGAATAAAGTTTAGATTTCAAAGTACTTATGT
GGTCATGCTAATCATACAGCATCCTACATCCATGCTCAGTACTGTAAAAATATTATTGGGAAAT
AGGCTCCAATAACTATATGGAAACTTAACAACCAGAATATACAGTAATAAATATTATTGGGTAA
TATGCTCCCAGATTAATGGAAACTTAAACAACCAGCAATATAATATCCTCATAAATTTTGCCTC
ATATTCTAGTGTAAGTGTGCAAGACTAACCCAGTTCATCTCCTGTTTTCTATATAATCTAAAGA
TTTAAGATGACGTCACAATCAATAACTGCTTCTAACAAGATGGGACACTAGAAATCTAGAATCA
GTGTACCCTGCAAATTTTCTACCAATTTATCCATTTCGAACAAAAACTATACATTTTAAGTAAA
TTTGGTCAGTATAAGAAAAATAGAATCAAACAAAAATATAAGTAAATTTGAATTGTTCCGATTG
GACATGTGTCATCTCACATTACTTAAAAGCAAACATAAGATATAAATTTCATATTTAAAGTATT
CGTAATATTTCCTTGATAACATATTTGTAAATATTCCAACAACTCATTTTAAAAGTACATGCAA
ATATGGCATTTCATCAATCATGCGAAGCATACAAATATTTTGTGTAGAATGGTCAAATTGTTTT
GAACAAAGCCATTAGTCAACTTAAGCATCACGTGGGATCACTTGCCAACATGCACCTTCATGAT
GTTTTCAGCATAAATTCACATTCAGCAAGAATCCAACCAGACTGTTAGATAATAAACATAGCTT
AATTATAGAATTTTGGAGGCACCTAAGGACCTGGTGCCAAGGTTGGTGGATCATGTCCTCCACT
AGGATGTTGCCAAACTTTGGCTGCCAGAAATGTGGCAAACTGCAGCCACAAACTGGATAGACCC
TAAACTAAAGATGACAAAAACAACTGAATAACTATCCTAGAAGCACCTTAGGTTTTCACAAAAC
TCACCAAACACACAACTAAACCTCTTCACTGAGATTAGCACAATCAGGCAGTAACTTACAAGTA
CAGAAAAAAACATGAACCTAACTTGTCTAACGTGAAAAAACAAAAGAGGACATATCCGGTGAAA
ATGAGCTAAGTGTTGAAAACTCGTGAAAATCATACCTAAAAGTTTCGTAAATTTATGAAAAAAA
TACTAGAGATAGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGCCAGGATTTGAAGTTCATTCAAATTAATGTCGCCATTGATGCCTGCCGGCCACATCCTCCGG
CATCGTTCTCGGTCCCTCCCGTGGTCGGCACTCCCTCCTTGTGCCTATAAAACAGGGTCCCCTC
CCTCCCCTTGCTCCGTTTTGCCCTCTCCCGAGTCCCTACCCACCTCCCCGCAGTGCTGGCGGTT
GGATCGGGAACCAGAGTCCGCCACGCGGAGTCCTCCCTGTGCCGACAGCGGTTCGACGGAGGCG
GAGCGCCGCGCGGAGCAGGCACCTTCCGGCGACAGCAACGGCGGATGACCTCCCAGCACCAGCA
GATGAGACGAGCGGCAACGGCAAGGATTGCAGGATTGTTGATGAACTCGTACTTTTATACTACT
CCCTCCGTTTCACAATGTAAGATTTTTTAGCATTACCCACATATATATATATATATATATATGT
TAATGAATCTAAACACATATATATATCCAGATTCATTAACATTTAAATGAACTAGGCACTCTGG
CGCGCTTCGCGGCGCCCCTTCGGAAGTTAGTGTGGTAATATTTAGGAAAAAAGAAATCAATGTG
ATATAGCGAGTACATGAGTATTGTGGGATTAAAAGCAACACATGACAGCATTGTATTAGATCAA
GTAAACAACTAAGCAACACAACTTGATTCGACGACTATAGATAATGGTTTCTAGGTATTGCAAG
GTAAAAAGGTAGGAGATAAGATTATTTCAACATCACGATTAGCATTGCAATTAGCGGAATCTAT
TGTTCTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAA
TTTGTCTTTTTTGTTACTCCTAAACGAAATTGAGTTTGAACTTGAGATTTGGTGAGAATGTATT
TCATATCTACACCTATCTCTAGTATTTTTTTCATGAATTTACGAAACTTTTAGGTATGATTTTC
ACGAGTTTTCAACACTTAGCTCATTTTCACCGGATATGTCCCCAAAACAAAATGGTACATGGAT
GATAAGCGGCGAGGCTGCAGTACTCTGAAGTGAATCACTTATATTCCTACTCCAGTCAGTATGA
TTGCCACCATTTCACACACAAATTTACTGAAGGTAGATACACAACACTTCAAGAACTCAGAACA
CATAAGGCAACAAACTAGAGCAATTACCACATTACATGACAACAGGTTCTTTTTCTCGAGGTTC
AGTTTGATGTCAAGGTTATTACCACATTATAGAAAGCCATTTACCAGACACTTATGTTCCACAG
CTTATGTCTTGAACAGTGCCATGTACGATATGCTTGTGTTTAGTGTTTACTAGTGCAAAGAGGC
AAAGCTTACATCATTAGGGCCACCATAGTTGGCACCAGCCTCCATTAAGAAATTTAAGCACTCA
GTTGAACCATCATTGCCCATTGCAGAATCAAGTGCAGCAGTTGAGATACAATCTGAGTTGACAT
CAGCACCAGCCTATCACATAAAAGGAATGTTTCTTTAAGGTGAATAATGTAAAAGTTAAAGGCT
TCCAAACTGAAGTGTTGGAAGAATGTTTTAATAAAGTAAGCAACCCCAGAGCAATGGTAGAACT
TGACAAAGCTAAGATGAAGGTACAATACCTCAACCAGGAGCTTCACACATTCCACTGATGAAAC
ATTTACAGCCTGAAAGAGGGGTTGTCATAGGATACAATCCAAACATCATGTACGTCTTGTTGCA
CTAGTGAGAGATGTGAAGCACATTAGTTGCTATTAATTGATTATAATAACTGGATGGAGAAAAA
TATCAAACAGAAAGGTAAATATACATGACCATATATCTATGCCAAGCTTTCAGTAAAAAAGAAG
GAAACATTTCCCGTGATATTGCAATTTTCAAAAACAAATAAGCACAATGTTGCATAGCTGCCTT
ATTGGTCAACTCTTGACTAGTAGATTTTTCTTATTTGAGTGATTGATTCCACATGACACTTACA
TAGGAATGGCAACATGATAGAAAATCAACCATTATGGCAAGTGCATAAAAGGGCAATGCACCCA
GAAGAAATCGTCCCATGCATGCAATTGGCTCTTTGAAAACCATACATACATGAAAGCATGCATA
ATAGATTTTCACATAAAACAATAGTGGTGATCCCAGTTAACATTAAACATTACTCTTGCGTAAG
AATGGAGAATATAAAGCTATAGACTGGACTATAGCTTTGAGAATACATCGTTATGGATTTAAAC
AGAAGCAATGAAGTATTTCTGATTATTGTAACAGCTGCTACCAAGGAGATCTTGAAGAATAACA
TGTAACTAGAAAACTAGACAGCTAGGAGCAAACATTTGAAAATTTAATTGTGCTGCAAATTAAA
GAGCCATGATCACATTTCACATCTTAACTTACATTGCACCAAAAAAGCAAAACAACGTCAAGGG
ATGAAAGTACCAAAGAGTAACTACAATGGAGAATGAGAACAACACAGCTAACAAACAAATGAAG
AAAAAGCAAATGTTCAAACTTAGTTTATGTTTACAGTTGAACATGCAACTTAAGGCAGAAGTAG
CATGATCTTAAGCTTACATCTGCATTATGATCCAATAAAACCTTCATAGCACCGACTTGTCATT
CCTTAGTAGCAAGATGTAGTGGCGTCCCACATTCATCAGCTACCGGATCAATATCAGCCCCCTT
TGCCAGCAACATTTCTATCATTTCACAATCTC
						
					

			
		

Sequences
Splice junction sequence	CATTCCTTAGTAGCAAGATGTAGTGGCGTCCCACATTCATCAGCTACCGGATCAATATCAGCCC CCTTTGCCAGCAACATTTCTATCATTTCACAATCTCcttagtgtagaacactgaagcagaaatg taatcttctctatcgactgctttattcccagatgtcttcaactcttctattttctttttattca catgttga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTAGTGTAGAACACTGAAGCAGAAATGTAATCTTCTCTATCGACTGCTTTATTCCCAGATGTC TTCAACTCTTCTATTTTCTTTTTATTCACATGTTGATCCTGAACCATAGATAATATTAAAGATG TAGACATGAGAAGAATGGAAAAATGCTATAATAGTAAAGAAACTACATAGGACTGTTCTGTAAA TGTTTGGGAAAACATGGTCTTGATTTGGCACAAGAATAAAGTTTAGATTTCAAAGTACTTATGT GGTCATGCTAATCATACAGCATCCTACATCCATGCTCAGTACTGTAAAAATATTATTGGGAAAT AGGCTCCAATAACTATATGGAAACTTAACAACCAGAATATACAGTAATAAATATTATTGGGTAA TATGCTCCCAGATTAATGGAAACTTAAACAACCAGCAATATAATATCCTCATAAATTTTGCCTC ATATTCTAGTGTAAGTGTGCAAGACTAACCCAGTTCATCTCCTGTTTTCTATATAATCTAAAGA TTTAAGATGACGTCACAATCAATAACTGCTTCTAACAAGATGGGACACTAGAAATCTAGAATCA GTGTACCCTGCAAATTTTCTACCAATTTATCCATTTCGAACAAAAACTATACATTTTAAGTAAA TTTGGTCAGTATAAGAAAAATAGAATCAAACAAAAATATAAGTAAATTTGAATTGTTCCGATTG GACATGTGTCATCTCACATTACTTAAAAGCAAACATAAGATATAAATTTCATATTTAAAGTATT CGTAATATTTCCTTGATAACATATTTGTAAATATTCCAACAACTCATTTTAAAAGTACATGCAA ATATGGCATTTCATCAATCATGCGAAGCATACAAATATTTTGTGTAGAATGGTCAAATTGTTTT GAACAAAGCCATTAGTCAACTTAAGCATCACGTGGGATCACTTGCCAACATGCACCTTCATGAT GTTTTCAGCATAAATTCACATTCAGCAAGAATCCAACCAGACTGTTAGATAATAAACATAGCTT AATTATAGAATTTTGGAGGCACCTAAGGACCTGGTGCCAAGGTTGGTGGATCATGTCCTCCACT AGGATGTTGCCAAACTTTGGCTGCCAGAAATGTGGCAAACTGCAGCCACAAACTGGATAGACCC TAAACTAAAGATGACAAAAACAACTGAATAACTATCCTAGAAGCACCTTAGGTTTTCACAAAAC TCACCAAACACACAACTAAACCTCTTCACTGAGATTAGCACAATCAGGCAGTAACTTACAAGTA CAGAAAAAAACATGAACCTAACTTGTCTAACGTGAAAAAACAAAAGAGGACATATCCGGTGAAA ATGAGCTAAGTGTTGAAAACTCGTGAAAATCATACCTAAAAGTTTCGTAAATTTATGAAAAAAA TACTAGAGATAGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NGCCAGGATTTGAAGTTCATTCAAATTAATGTCGCCATTGATGCCTGCCGGCCACATCCTCCGG CATCGTTCTCGGTCCCTCCCGTGGTCGGCACTCCCTCCTTGTGCCTATAAAACAGGGTCCCCTC CCTCCCCTTGCTCCGTTTTGCCCTCTCCCGAGTCCCTACCCACCTCCCCGCAGTGCTGGCGGTT GGATCGGGAACCAGAGTCCGCCACGCGGAGTCCTCCCTGTGCCGACAGCGGTTCGACGGAGGCG GAGCGCCGCGCGGAGCAGGCACCTTCCGGCGACAGCAACGGCGGATGACCTCCCAGCACCAGCA GATGAGACGAGCGGCAACGGCAAGGATTGCAGGATTGTTGATGAACTCGTACTTTTATACTACT CCCTCCGTTTCACAATGTAAGATTTTTTAGCATTACCCACATATATATATATATATATATATGT TAATGAATCTAAACACATATATATATCCAGATTCATTAACATTTAAATGAACTAGGCACTCTGG CGCGCTTCGCGGCGCCCCTTCGGAAGTTAGTGTGGTAATATTTAGGAAAAAAGAAATCAATGTG ATATAGCGAGTACATGAGTATTGTGGGATTAAAAGCAACACATGACAGCATTGTATTAGATCAA GTAAACAACTAAGCAACACAACTTGATTCGACGACTATAGATAATGGTTTCTAGGTATTGCAAG GTAAAAAGGTAGGAGATAAGATTATTTCAACATCACGATTAGCATTGCAATTAGCGGAATCTAT TGTTCTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAA TTTGTCTTTTTTGTTACTCCTAAACGAAATTGAGTTTGAACTTGAGATTTGGTGAGAATGTATT TCATATCTACACCTATCTCTAGTATTTTTTTCATGAATTTACGAAACTTTTAGGTATGATTTTC ACGAGTTTTCAACACTTAGCTCATTTTCACCGGATATGTCCCCAAAACAAAATGGTACATGGAT GATAAGCGGCGAGGCTGCAGTACTCTGAAGTGAATCACTTATATTCCTACTCCAGTCAGTATGA TTGCCACCATTTCACACACAAATTTACTGAAGGTAGATACACAACACTTCAAGAACTCAGAACA CATAAGGCAACAAACTAGAGCAATTACCACATTACATGACAACAGGTTCTTTTTCTCGAGGTTC AGTTTGATGTCAAGGTTATTACCACATTATAGAAAGCCATTTACCAGACACTTATGTTCCACAG CTTATGTCTTGAACAGTGCCATGTACGATATGCTTGTGTTTAGTGTTTACTAGTGCAAAGAGGC AAAGCTTACATCATTAGGGCCACCATAGTTGGCACCAGCCTCCATTAAGAAATTTAAGCACTCA GTTGAACCATCATTGCCCATTGCAGAATCAAGTGCAGCAGTTGAGATACAATCTGAGTTGACAT CAGCACCAGCCTATCACATAAAAGGAATGTTTCTTTAAGGTGAATAATGTAAAAGTTAAAGGCT TCCAAACTGAAGTGTTGGAAGAATGTTTTAATAAAGTAAGCAACCCCAGAGCAATGGTAGAACT TGACAAAGCTAAGATGAAGGTACAATACCTCAACCAGGAGCTTCACACATTCCACTGATGAAAC ATTTACAGCCTGAAAGAGGGGTTGTCATAGGATACAATCCAAACATCATGTACGTCTTGTTGCA CTAGTGAGAGATGTGAAGCACATTAGTTGCTATTAATTGATTATAATAACTGGATGGAGAAAAA TATCAAACAGAAAGGTAAATATACATGACCATATATCTATGCCAAGCTTTCAGTAAAAAAGAAG GAAACATTTCCCGTGATATTGCAATTTTCAAAAACAAATAAGCACAATGTTGCATAGCTGCCTT ATTGGTCAACTCTTGACTAGTAGATTTTTCTTATTTGAGTGATTGATTCCACATGACACTTACA TAGGAATGGCAACATGATAGAAAATCAACCATTATGGCAAGTGCATAAAAGGGCAATGCACCCA GAAGAAATCGTCCCATGCATGCAATTGGCTCTTTGAAAACCATACATACATGAAAGCATGCATA ATAGATTTTCACATAAAACAATAGTGGTGATCCCAGTTAACATTAAACATTACTCTTGCGTAAG AATGGAGAATATAAAGCTATAGACTGGACTATAGCTTTGAGAATACATCGTTATGGATTTAAAC AGAAGCAATGAAGTATTTCTGATTATTGTAACAGCTGCTACCAAGGAGATCTTGAAGAATAACA TGTAACTAGAAAACTAGACAGCTAGGAGCAAACATTTGAAAATTTAATTGTGCTGCAAATTAAA GAGCCATGATCACATTTCACATCTTAACTTACATTGCACCAAAAAAGCAAAACAACGTCAAGGG ATGAAAGTACCAAAGAGTAACTACAATGGAGAATGAGAACAACACAGCTAACAAACAAATGAAG AAAAAGCAAATGTTCAAACTTAGTTTATGTTTACAGTTGAACATGCAACTTAAGGCAGAAGTAG CATGATCTTAAGCTTACATCTGCATTATGATCCAATAAAACCTTCATAGCACCGACTTGTCATT CCTTAGTAGCAAGATGTAGTGGCGTCCCACATTCATCAGCTACCGGATCAATATCAGCCCCCTT TGCCAGCAACATTTCTATCATTTCACAATCTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osa_circ_036418* 						
					
						PMCS

Conservation Information
Conserved circRNAs	osa_circ_036418*
PMCS

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							8774508-8774505(-)
8773456-8770340(+)
						
						Potential amino acid sequence
						
							MIEMLLAKGADIDPAVNVSSVECVKLLVEAGADVNSDCISTAALDSAMGNDGSTECLNFLMEAG
ANYGGPNDFRVYPVCGCSLPHFWQPKFGNILVEDMIHQPWHQDQHVNKKKIEELKTSGNKAVDR
EDYISASVFYTKEIVK*(-)
MKHLQPDQYQPPLPATFLSFHNLLSVEH*(+)
						
						Sponge-miRNAs
						
							osa-miR1847.1 osa-miR396c-5p 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	8774508-8774505(-) 8773456-8770340(+)
Potential amino acid sequence	MIEMLLAKGADIDPAVNVSSVECVKLLVEAGADVNSDCISTAALDSAMGNDGSTECLNFLMEAG ANYGGPNDFRVYPVCGCSLPHFWQPKFGNILVEDMIHQPWHQDQHVNKKKIEELKTSGNKAVDR EDYISASVFYTKEIVK(-) MKHLQPDQYQPPLPATFLSFHNLLSVEH(+)
Sponge-miRNAs	osa-miR1847.1 osa-miR396c-5p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Huang et al., 2021

circRNA

Detail information of BGIOSGA027410_circ_g.1

Address

Any questions?

Supported by