Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G23080_circ_g.2 |
ID in PlantcircBase | ath_circ_003989 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 8181682-8182128 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT1G23080 |
Parent gene annotation |
Auxin efflux carrier component 7 |
Parent gene strand | - |
Alternative splicing | AT1G23080_circ_g.3 |
Support reads | 60 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G23080.1:2 AT1G23080.3:2 AT1G23080.2:2 AT1G23080.4:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.336856135 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8182121-8181684(-) |
Potential amino acid sequence |
MNGDYGGEEESERVKEVPNGLHKLRCNSTAELNPKEAIETGETVPVKHMPPASVMTRLILIMVW RKLIRNPNTYSSLIGLIWALVAFRWDVAMPKIIQQSISILSDAGLGMAMFSLAGPMNGDYGGEE ESERVKEVPNGLHKLRCNSTAELNPKEAIETGETVPVKHMPPASVMTRLILIMVWRKLIRNPNT YSSLIGLIWALVAFRWDVAMPKIIQQSISILSDAGLGMAMFSLAGPMNGDYGGEEESERVKEVP NGLHKLRCNSTAELNPKEAIETGETVPVKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIW ALVAFRWDVAMPKIIQQSISILSDAGLGMAMFSLAGPMNGDYGGEEESERVKEVPNGLHKLRCN STAELNPKEAIETGETVPVKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAFRWDV AMPKIIQQSISILSDAGLGMAMFSL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |