Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G14610_circ_g.13 |
ID in PlantcircBase | ath_circ_002549 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 5012523-5012600 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G14610 |
Parent gene annotation |
Valine--tRNA ligase, mitochondrial 1 |
Parent gene strand | - |
Alternative splicing | AT1G14610_circ_g.10 AT1G14610_circ_g.11 AT1G14610_circ_g.12 AT1G14610_circ_g.14 AT1G14610_circ_g.15 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G14610.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.104700855 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5012580-5012525(-) 5012553-5012597(+) 5012563-5012597(+) |
Potential amino acid sequence |
MRDRGMTRHDVGREEFVKEVVVEKKIMRDRGMTRHDVGREEFVKEVVVEKKIMRDRGMTRHDVG REEFVKEVVVEKKIMRDRGMTRHDVGREEFVKE(-) MPSHASITHDLFLDHHFLYEFFTANIMPSHASITHDLFLDHHFLYEFFTANIMPSHASITHDLF LDHHFLYEFFTANIMPSHASITHDLFLDHH(+) MPLSRMIFFSTTTSFTNSSRPTSCLVMPLSRMIFFSTTTSFTNSSRPTSCLVMPLSRMIFFSTT TSFTNSSRPTSCLVMPLSRMIFFSTT(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |