Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G14610_circ_g.10 |
ID in PlantcircBase | ath_circ_002546 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 5011889-5012187 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G14610 |
Parent gene annotation |
Valine--tRNA ligase, mitochondrial 1 |
Parent gene strand | - |
Alternative splicing | AT1G14610_circ_g.11 AT1G14610_circ_g.12 AT1G14610_circ_g.13 AT1G14610_circ_g.14 AT1G14610_circ_g.15 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G14610.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.20147263 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5012179-5011891(-) 5011902-5012184(+) |
Potential amino acid sequence |
MDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCILRTAISDVECFTMDEQRSKAVTEAFVRLYK EGLIYRDIRLVNWDCILRTAISDVECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCILR TAISDVECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCILRTAISDVE(-) MAVLKIQSQLTSRISLYISPSLYNRTKASVTAFDLCSSIVKHSTSDMAVLKIQSQLTSRISLYI SPSLYNRTKASVTAFDLCSSIVKHSTSDMAVLKIQSQLTSRISLYISPSLYNRTKASVTAFDLC SSIVKHSTSDMAVLKIQSQLTSRISLYISPSLYNRTKASVTAFDLCSSIVK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |