Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os08g0427300_circ_g.4 |
| ID in PlantcircBase | osa_circ_037107 |
| Alias | Os_ciR11454 |
| Organism | Oryza sativa |
| Position | chr8: 20554165-20557070 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer, find_circ |
| Parent gene | Os08g0427300 |
| Parent gene annotation |
Protein of unknown function DUF1712, fungi domain containing pro tein. (Os08t0427300-01);Similar to Myrosinase (Fragment). (Os08t 0427300-02) |
| Parent gene strand | + |
| Alternative splicing | Os08g0427300_circ_g.1 Os08g0427300_circ_g.2 Os08g0427300_circ_g.3 Os08g0427300_circ_g.5 |
| Support reads | 2/1 |
| Tissues | root/root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os08t0427300-02:6 Os08t0427300-01:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.125067019 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
20554251-20557067(+) 20557038-20554193(+) 20554732-20557063(-) |
| Potential amino acid sequence |
MVLVVEKNKDIESTWRCGALQGILKEVHSLFTMFHGPIRTLLDRQPSAELARGHLRTFFTDYLS DFNAGKKIQLPTFRDCLKERGTVQMLTISREVALEVQSLTTVLGSCLGNVMCQSLVLFEDLLVS TTLPPDDTLNLYTYAILRLTPRALLSNATSWSYLRKGTSVHAGPTSSSSNGTASVERPLQREKL YKGKDGFVAAGSTTSEVRGAVAWVPILWFQQAEDRMHLCVYQHKNITILLLIPASSLINGDDGI AHVKRHLLENASQNIVTLELKLSRGWGGENAYHVGGYRYLLVDPDRKVSRASPPGKVTTLSKDS LLSLNRLREEIDLEKSRAKRSDSCHDKDFEVCIRAKNNAWVIAKVTRGRELYMALEKAGETLLY ASTAIEKFSNRIFSPDDDCEVIESEKHSHVFYQAEADIWMVLVVEKNKDIESTWRCGALQGILK EVHSLFTMFHGPIRTLLDRQPSAELARGHLRTFFTDYLSDFNAGKKIQLPTFRDCLKERGTVQM LTISREVALEVQSLTTVLGSCLGNVMCQSLVLFEDLLVSTTLPPDDTLNLYTYAILRLTPRALL SNATSWSYLRKGTSVHAGPTSSSSNGTASVERPLQREKLYKGKDGFVAAGSTTSEVRGAVAWVP ILWFQQAEDRMHLCVYQHKNITILLLIPASSLINGDDGIAHVKRHLLENASQNIVTLELKLSRG WGGENAYHVGGYRYLLVDPDRKVSRASPPGKVTTLSKDSLLSLNRLREEIDLEKSRAKRSDSCH DKDFEVCIRAKNNAWVIAKVTRGRELYMALEKAGETLLYASTAIEKFSNRIFSPDDDCEVIESE KHSHVFYQAEADIWMVLVVEKNKDIESTWRCGALQGILKEVHSLFTMFHGPIRTLLDRQPSAEL ARGHLRTFFTDYLSDFNAGKKIQLPTFRDCLKERGTVQMLTISREVALEVQSLTTVLGSCLGNV MCQSLVLFEDLLVSTTLPPDDTLNLYTYAILRLTPRALLSNATSWSYLRKGTSVHAGPTSSSSN GTASVERPLQREKLYKGKDGFVAAGSTTSEVRGAVAWVPILWFQQAEDRMHLCVYQHKNITILL LIPASSLINGDDGIAHVKRHLLENASQNIVTLELKLSRGWGGENAYHVGGYRYLLVDPDRKVSR ASPPGKVTTLSKDSLLSLNRLREEIDLEKSRAKRSDSCHDKDFEVCIRAKNNAWVIAKVTRGRE LYMALEKAGETLLYASTAIEKFSNRIFSPDDDCEVIESEKHSHVFYQAEADIWMVLVVEKNKDI ESTWRCGALQGILKEVHSLFTMFHGPIRTLLDRQPSAELARGHLRTFFTDYLSDFNAGKKIQLP TFRDCLKERGTVQMLTISREVALEVQSLTTVLGSCLGNVMCQSLVLFEDLLVSTTLPPDDTLNL YTYAILRLTPRALLSNATSWSYLRKGTSVHAGPTSSSSNGTASVERPLQREKLYKGKDGFVAAG STTSEVRGAVAWVPILWFQQAEDRMHLCVYQHKNITILLLIPASSLINGDDGIAHVKRHLLENA SQNIVTLELKLSRGWGGENAYHVGGYRYLLVDPDRKVSRASPPGKVTTLSKDSLLSLNRLREEI DLEKSRAKRSDSCHDKDFEVCIRAKNNAWVIAKVTRGRELYMALEKAGETLLYASTAIEKFSN( +) MHLLPSRSLATEYFLLMMIVR*(+) MHHTAKLTQCPCFSPLPEPSIYLLQLGKKHGSVSLILSPHNHHQEKIFCC*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ye et al., 2015;Chu et al., 2017 |