Detail information of Os08g0427300_circ_g.4


General Information
CircRNA Name Os08g0427300_circ_g.4
ID in PlantcircBase osa_circ_037107
Alias Os_ciR11454
Organism Oryza sativa
Position chr8: 20554165-20557070  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os08g0427300
Parent gene annotation Protein of unknown function DUF1712, fungi domain containing pro
tein. (Os08t0427300-01);Similar to Myrosinase (Fragment). (Os08t
0427300-02)
Parent gene strand +
Alternative splicing Os08g0427300_circ_g.1 Os08g0427300_circ_g.2 Os08g0427300_circ_g.3 Os08g0427300_circ_g.5
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0427300-02:6
Os08t0427300-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCTAAAGTTACCCGAGGAAGAGAACTTTATATGGCGTTAGAGAAGGCTGGTGAAACACTTCT
TTATGCATCTACTGCCATCGAGAAGTTTAGCAACAGaatattttctcctgatgatgattgtgag
gtgatagaatcagagaaacactcccatgttttttaccaagctgaagcagatatatggatggttc
tggtaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATATTTTCTCCTGATGATGATTGTGAGGTGATAGAATCAGAGAAACACTCCCATGTTTTTTAC
CAAGCTGAAGCAGATATATGGATGGTTCTGGTAATGGCTGTTCTTACATTAACAGTTCATCACT
ATTTGTTATAAACCAAATTGTTGTACTCTAGAGCCTCTTCAATTGGGTGTAGTTAAAAACAGCA
TGTAACCTTTGTCTGTCACCTATTGTCATTGAACAATATTTACTGGAAATCCTGAAAACATTCA
AGAACCAAGAGTATTTCTAGTCTGCCACCAAAGTAAATTCTGTAACGAGAACATGGGCGTTCAT
ACTCAAGCATACTATGCCTTCAGTCTCGCAGATAGTATAATGACCATTTTGGATTTCTTTATTT
TTAACTGAAGAAGCTATGAGTTTGCTTCATAACACTTGTTCCTTTCCCAGCAAATTGTCTGTAA
ATCTTTTTTTGCACTTATAACTTGAATGATTATCATACTCATTTCCAGTGAAAACTTGTTCATG
CATAGGTAGTGGAGAAAAACAAGGACATTGAGTCAACTTGGCGGTGTGGTGCATTGCAAGGAAT
TCTTAAAGAGGTTCACTCGCTTTTCACAATGTTCCACGGACCAATTCGAACTTTACTTGACAGG
CAACCCAGTGCAGAACTTGCCCGTGGTCACCTTCGCACATTTTTCACAGATTATTTAAGTGGTG
AGTCTCGTTTCCATTCATATTGTGTATAACATGAGCGCAACATTGCCCTTTAAAGAAATATACA
TTTGGTCTTCATGAACATGTTCTTGAGCAGATTTTAATGCTGGTAAAAAGATACAATTGCCAAC
CTTCCGTGATTGCCTAAAGGAGCGAGGAACTGTCCAAATGCTAACAATCTCACGAGAAGTGGCA
CTTGAAGTTCAGGTAGGAAATGTACTCTTCAAACATGAAAGACCTCCTAGTTACAGAAATATAA
CTGTAGTACCTTTTGATCTTTTCAGGGTACATGATAGTTGTCTCTTGCTTTTATAATTATTGCT
TGTGTGAAATATGTTATTTTTCTTGCTAGCGGCCTGTTATTTATGTCCTGTCCAGAGTTGTAGT
CTGGTTTTCAGATTATGAGATCGGCGTTTTCTTGAGGGTCTAGTAGTCATTTTCGAAGGTAGCT
AATGATGTTATAGGCTTAAAAACGGTTGCTCTGTTGTACTTGTAGGAGTATGTACTTATGCAGA
AGCCTGCTTTCCGAGGGGGAGAACTTTTGGAATCAACTCTCACAACTTAACTACCCCTAGATAG
CTATTGTCTCACTGTTATAGTGTTATGAAGCTGTGCTTAAAGTACTGTCTAAAGTCATCTTGAC
TCTGATAATTACATAGATTTGTTTTCTCTGTTTCAACTATTGATGCATGAATATTTGCAGTCAC
TCACCACAGTTCTTGGGTCATGTCTTGGAAATGTCATGTGCCAATCACTTGTATTATTTGAAGA
TCTCTTGGTGTCCACAACACTTCCACCGGTACGGGGTCTCCCTTTAATCATCACTTCTTTTATA
ACTTTGTTTTCTTTGATGGCTTTGAGCAGTTCCCATGTGATTAATGTAGTTTTACCACTTTGTA
GGATGATACACTAAACCTATATACTTATGCTATCTTGAGGTTAACTCCTCGTGCTTTATTGTCC
AATGCAACTTCCTGGTCCTATCTGCGGAAAGGAACTTCGGTTCATGCTGGCCCCACTTCTAGTT
CATCAAATGGAACAGCTTCAGTAGAAAGGTATCGTAGTCGATCTCGTGATACTTCTCCTGGTGG
ACAAAATCAGATGCATCATTATTTCAGGCCTCTCCAGCGTGAGAAACTATACAAAGGAAAGGAT
GGTTTTGTTGCCGCTGGTTCCACTACTTCAGAAGTTCGTGGTGCTGTGGCTTGGGTTCCCATAC
TGTGGTTCCAGCAGGCAGAAGACCGCATGCATCTCTGTGTTTATCAGCACAAGAACATAACCAT
TCTGCTACTGATTCCAGCTTCATCTCTAATAAATGGAGATGATGGCATTGCTCATGTGAAGAGA
CATCTTCTTGAAAATGTGAGTGGCCCTTGCATAATTTCCACCCTTTTCATGATTTCTTGATGCG
GTACTGAGCTCAAGCAGGCCATGTTGAATGAAAATAAGAAATATTCTCATGTCTGGTGTGGCTT
GCAAAATATTGATACTGTGGTTGTGAACACATGCTCATTTTTTTATATTTATATTGCAGGCATC
ACAGAACATTGTGACTCTGGAGCTGAAATTATCACGAGGATGGGGAGGAGAAAATGCTTATCAT
GTTGGTGGATATCGCTACTTACTTGTTGATCCAGATAGAAAAGTATCAAGAGCCTCCCCACCTG
GGAAAGTCACCACCCTCTCAAAGGTTTGTTCTGTTGCATACTTGCATATAGAGTAAACATACGA
TGTTTCCTACAATATGTGTTAATGGTTCTGTTCTTCTCTTCACCTCAATATTTCCATAAATTTT
AGATCCTAAAGATTGTTAATGTTGGTCTGTTTTTGTAGACTAATATGTTTTAGATGATCAATTC
GTATCTCCTGTTCATTTCTTCCTCACTATTGTTCTTCGGTTGCAATTTTACGTTTTTGTGTTGA
ATTGGATTGCCATGCATTTCTTTTAACCGTGCTCTGCAATGAAATCATGCAGGATTCTCTACTT
TCCTTGAATAGACTAAGAGAAGAAATAGATTTGGAGAAGTCAAGGGCCAAGAGGTCTGACTCTT
GTCATGACAAGGATTTTGAAGTATGCATCAGAGCCAAAAATAATGCATGGGTCATTGCTAAAGT
TACCCGAGGAAGAGAACTTTATATGGCGTTAGAGAAGGCTGGTGAAACACTTCTTTATGCATCT
ACTGCCATCGAGAAGTTTAGCAACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.125067019
Functional Information
Coding potential Y
Potential coding position 20554251-20557067(+)
20557038-20554193(+)
20554732-20557063(-)
Potential amino acid sequence MVLVVEKNKDIESTWRCGALQGILKEVHSLFTMFHGPIRTLLDRQPSAELARGHLRTFFTDYLS
DFNAGKKIQLPTFRDCLKERGTVQMLTISREVALEVQSLTTVLGSCLGNVMCQSLVLFEDLLVS
TTLPPDDTLNLYTYAILRLTPRALLSNATSWSYLRKGTSVHAGPTSSSSNGTASVERPLQREKL
YKGKDGFVAAGSTTSEVRGAVAWVPILWFQQAEDRMHLCVYQHKNITILLLIPASSLINGDDGI
AHVKRHLLENASQNIVTLELKLSRGWGGENAYHVGGYRYLLVDPDRKVSRASPPGKVTTLSKDS
LLSLNRLREEIDLEKSRAKRSDSCHDKDFEVCIRAKNNAWVIAKVTRGRELYMALEKAGETLLY
ASTAIEKFSNRIFSPDDDCEVIESEKHSHVFYQAEADIWMVLVVEKNKDIESTWRCGALQGILK
EVHSLFTMFHGPIRTLLDRQPSAELARGHLRTFFTDYLSDFNAGKKIQLPTFRDCLKERGTVQM
LTISREVALEVQSLTTVLGSCLGNVMCQSLVLFEDLLVSTTLPPDDTLNLYTYAILRLTPRALL
SNATSWSYLRKGTSVHAGPTSSSSNGTASVERPLQREKLYKGKDGFVAAGSTTSEVRGAVAWVP
ILWFQQAEDRMHLCVYQHKNITILLLIPASSLINGDDGIAHVKRHLLENASQNIVTLELKLSRG
WGGENAYHVGGYRYLLVDPDRKVSRASPPGKVTTLSKDSLLSLNRLREEIDLEKSRAKRSDSCH
DKDFEVCIRAKNNAWVIAKVTRGRELYMALEKAGETLLYASTAIEKFSNRIFSPDDDCEVIESE
KHSHVFYQAEADIWMVLVVEKNKDIESTWRCGALQGILKEVHSLFTMFHGPIRTLLDRQPSAEL
ARGHLRTFFTDYLSDFNAGKKIQLPTFRDCLKERGTVQMLTISREVALEVQSLTTVLGSCLGNV
MCQSLVLFEDLLVSTTLPPDDTLNLYTYAILRLTPRALLSNATSWSYLRKGTSVHAGPTSSSSN
GTASVERPLQREKLYKGKDGFVAAGSTTSEVRGAVAWVPILWFQQAEDRMHLCVYQHKNITILL
LIPASSLINGDDGIAHVKRHLLENASQNIVTLELKLSRGWGGENAYHVGGYRYLLVDPDRKVSR
ASPPGKVTTLSKDSLLSLNRLREEIDLEKSRAKRSDSCHDKDFEVCIRAKNNAWVIAKVTRGRE
LYMALEKAGETLLYASTAIEKFSNRIFSPDDDCEVIESEKHSHVFYQAEADIWMVLVVEKNKDI
ESTWRCGALQGILKEVHSLFTMFHGPIRTLLDRQPSAELARGHLRTFFTDYLSDFNAGKKIQLP
TFRDCLKERGTVQMLTISREVALEVQSLTTVLGSCLGNVMCQSLVLFEDLLVSTTLPPDDTLNL
YTYAILRLTPRALLSNATSWSYLRKGTSVHAGPTSSSSNGTASVERPLQREKLYKGKDGFVAAG
STTSEVRGAVAWVPILWFQQAEDRMHLCVYQHKNITILLLIPASSLINGDDGIAHVKRHLLENA
SQNIVTLELKLSRGWGGENAYHVGGYRYLLVDPDRKVSRASPPGKVTTLSKDSLLSLNRLREEI
DLEKSRAKRSDSCHDKDFEVCIRAKNNAWVIAKVTRGRELYMALEKAGETLLYASTAIEKFSN(
+)
MHLLPSRSLATEYFLLMMIVR*(+)
MHHTAKLTQCPCFSPLPEPSIYLLQLGKKHGSVSLILSPHNHHQEKIFCC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017