Detail information of Os08g0427300_circ_g.3


General Information
CircRNA Name Os08g0427300_circ_g.3
ID in PlantcircBase osa_circ_037106
Alias NA
Organism Oryza sativa
Position chr8: 20554165-20556555  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os08g0427300
Parent gene annotation Protein of unknown function DUF1712, fungi domain containing pro
tein. (Os08t0427300-01);Similar to Myrosinase (Fragment). (Os08t
0427300-02)
Parent gene strand +
Alternative splicing Os08g0427300_circ_g.1 Os08g0427300_circ_g.2 Os08g0427300_circ_g.4 Os08g0427300_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0427300-01:7
Os08t0427300-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATGCTTATCATGTTGGTGGATATCGCTACTTACTTGTTGATCCAGATAGAAAAGTATCAAGA
GCCTCCCCACCTGGGAAAGTCACCACCCTCTCAAAGaatattttctcctgatgatgattgtgag
gtgatagaatcagagaaacactcccatgttttttaccaagctgaagcagatatatggatggttc
tggtaatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1039
Transcript exons: 20554165-20554258,20554682-20554865,20554963-20555072,20
555569-20555664,20555766-20555920,20555984-20556227,2055
6400-20556555
AATATTTTCTCCTGATGATGATTGTGAGGTGATAGAATCAGAGAAACACTCCCATGTTTTTTAC
CAAGCTGAAGCAGATATATGGATGGTTCTGGTAGTGGAGAAAAACAAGGACATTGAGTCAACTT
GGCGGTGTGGTGCATTGCAAGGAATTCTTAAAGAGGTTCACTCGCTTTTCACAATGTTCCACGG
ACCAATTCGAACTTTACTTGACAGGCAACCCAGTGCAGAACTTGCCCGTGGTCACCTTCGCACA
TTTTTCACAGATTATTTAAGTGATTTTAATGCTGGTAAAAAGATACAATTGCCAACCTTCCGTG
ATTGCCTAAAGGAGCGAGGAACTGTCCAAATGCTAACAATCTCACGAGAAGTGGCACTTGAAGT
TCAGTCACTCACCACAGTTCTTGGGTCATGTCTTGGAAATGTCATGTGCCAATCACTTGTATTA
TTTGAAGATCTCTTGGTGTCCACAACACTTCCACCGGATGATACACTAAACCTATATACTTATG
CTATCTTGAGGTTAACTCCTCGTGCTTTATTGTCCAATGCAACTTCCTGGTCCTATCTGCGGAA
AGGAACTTCGGTTCATGCTGGCCCCACTTCTAGTTCATCAAATGGAACAGCTTCAGTAGAAAGG
CCTCTCCAGCGTGAGAAACTATACAAAGGAAAGGATGGTTTTGTTGCCGCTGGTTCCACTACTT
CAGAAGTTCGTGGTGCTGTGGCTTGGGTTCCCATACTGTGGTTCCAGCAGGCAGAAGACCGCAT
GCATCTCTGTGTTTATCAGCACAAGAACATAACCATTCTGCTACTGATTCCAGCTTCATCTCTA
ATAAATGGAGATGATGGCATTGCTCATGTGAAGAGACATCTTCTTGAAAATGCATCACAGAACA
TTGTGACTCTGGAGCTGAAATTATCACGAGGATGGGGAGGAGAAAATGCTTATCATGTTGGTGG
ATATCGCTACTTACTTGTTGATCCAGATAGAAAAGTATCAAGAGCCTCCCCACCTGGGAAAGTC
ACCACCCTCTCAAAG

Genomic sequence AATATTTTCTCCTGATGATGATTGTGAGGTGATAGAATCAGAGAAACACTCCCATGTTTTTTAC
CAAGCTGAAGCAGATATATGGATGGTTCTGGTAATGGCTGTTCTTACATTAACAGTTCATCACT
ATTTGTTATAAACCAAATTGTTGTACTCTAGAGCCTCTTCAATTGGGTGTAGTTAAAAACAGCA
TGTAACCTTTGTCTGTCACCTATTGTCATTGAACAATATTTACTGGAAATCCTGAAAACATTCA
AGAACCAAGAGTATTTCTAGTCTGCCACCAAAGTAAATTCTGTAACGAGAACATGGGCGTTCAT
ACTCAAGCATACTATGCCTTCAGTCTCGCAGATAGTATAATGACCATTTTGGATTTCTTTATTT
TTAACTGAAGAAGCTATGAGTTTGCTTCATAACACTTGTTCCTTTCCCAGCAAATTGTCTGTAA
ATCTTTTTTTGCACTTATAACTTGAATGATTATCATACTCATTTCCAGTGAAAACTTGTTCATG
CATAGGTAGTGGAGAAAAACAAGGACATTGAGTCAACTTGGCGGTGTGGTGCATTGCAAGGAAT
TCTTAAAGAGGTTCACTCGCTTTTCACAATGTTCCACGGACCAATTCGAACTTTACTTGACAGG
CAACCCAGTGCAGAACTTGCCCGTGGTCACCTTCGCACATTTTTCACAGATTATTTAAGTGGTG
AGTCTCGTTTCCATTCATATTGTGTATAACATGAGCGCAACATTGCCCTTTAAAGAAATATACA
TTTGGTCTTCATGAACATGTTCTTGAGCAGATTTTAATGCTGGTAAAAAGATACAATTGCCAAC
CTTCCGTGATTGCCTAAAGGAGCGAGGAACTGTCCAAATGCTAACAATCTCACGAGAAGTGGCA
CTTGAAGTTCAGGTAGGAAATGTACTCTTCAAACATGAAAGACCTCCTAGTTACAGAAATATAA
CTGTAGTACCTTTTGATCTTTTCAGGGTACATGATAGTTGTCTCTTGCTTTTATAATTATTGCT
TGTGTGAAATATGTTATTTTTCTTGCTAGCGGCCTGTTATTTATGTCCTGTCCAGAGTTGTAGT
CTGGTTTTCAGATTATGAGATCGGCGTTTTCTTGAGGGTCTAGTAGTCATTTTCGAAGGTAGCT
AATGATGTTATAGGCTTAAAAACGGTTGCTCTGTTGTACTTGTAGGAGTATGTACTTATGCAGA
AGCCTGCTTTCCGAGGGGGAGAACTTTTGGAATCAACTCTCACAACTTAACTACCCCTAGATAG
CTATTGTCTCACTGTTATAGTGTTATGAAGCTGTGCTTAAAGTACTGTCTAAAGTCATCTTGAC
TCTGATAATTACATAGATTTGTTTTCTCTGTTTCAACTATTGATGCATGAATATTTGCAGTCAC
TCACCACAGTTCTTGGGTCATGTCTTGGAAATGTCATGTGCCAATCACTTGTATTATTTGAAGA
TCTCTTGGTGTCCACAACACTTCCACCGGTACGGGGTCTCCCTTTAATCATCACTTCTTTTATA
ACTTTGTTTTCTTTGATGGCTTTGAGCAGTTCCCATGTGATTAATGTAGTTTTACCACTTTGTA
GGATGATACACTAAACCTATATACTTATGCTATCTTGAGGTTAACTCCTCGTGCTTTATTGTCC
AATGCAACTTCCTGGTCCTATCTGCGGAAAGGAACTTCGGTTCATGCTGGCCCCACTTCTAGTT
CATCAAATGGAACAGCTTCAGTAGAAAGGTATCGTAGTCGATCTCGTGATACTTCTCCTGGTGG
ACAAAATCAGATGCATCATTATTTCAGGCCTCTCCAGCGTGAGAAACTATACAAAGGAAAGGAT
GGTTTTGTTGCCGCTGGTTCCACTACTTCAGAAGTTCGTGGTGCTGTGGCTTGGGTTCCCATAC
TGTGGTTCCAGCAGGCAGAAGACCGCATGCATCTCTGTGTTTATCAGCACAAGAACATAACCAT
TCTGCTACTGATTCCAGCTTCATCTCTAATAAATGGAGATGATGGCATTGCTCATGTGAAGAGA
CATCTTCTTGAAAATGTGAGTGGCCCTTGCATAATTTCCACCCTTTTCATGATTTCTTGATGCG
GTACTGAGCTCAAGCAGGCCATGTTGAATGAAAATAAGAAATATTCTCATGTCTGGTGTGGCTT
GCAAAATATTGATACTGTGGTTGTGAACACATGCTCATTTTTTTATATTTATATTGCAGGCATC
ACAGAACATTGTGACTCTGGAGCTGAAATTATCACGAGGATGGGGAGGAGAAAATGCTTATCAT
GTTGGTGGATATCGCTACTTACTTGTTGATCCAGATAGAAAAGTATCAAGAGCCTCCCCACCTG
GGAAAGTCACCACCCTCTCAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.237110418
Functional Information
Coding potential Y
Potential coding position 20554251-20554176(+)
20556459-20554176(+)
20554732-20556485(-)
Potential amino acid sequence MVLVVEKNKDIESTWRCGALQGILKEVHSLFTMFHGPIRTLLDRQPSAELARGHLRTFFTDYLS
DFNAGKKIQLPTFRDCLKERGTVQMLTISREVALEVQSLTTVLGSCLGNVMCQSLVLFEDLLVS
TTLPPDDTLNLYTYAILRLTPRALLSNATSWSYLRKGTSVHAGPTSSSSNGTASVERPLQREKL
YKGKDGFVAAGSTTSEVRGAVAWVPILWFQQAEDRMHLCVYQHKNITILLLIPASSLINGDDGI
AHVKRHLLENASQNIVTLELKLSRGWGGENAYHVGGYRYLLVDPDRKVSRASPPGKVTTLSKNI
FS*(+)
MLIMLVDIATYLLIQIEKYQEPPHLGKSPPSQRIFSPDDDCEVIESEKHSHVFYQAEADIWMVL
VVEKNKDIESTWRCGALQGILKEVHSLFTMFHGPIRTLLDRQPSAELARGHLRTFFTDYLSDFN
AGKKIQLPTFRDCLKERGTVQMLTISREVALEVQSLTTVLGSCLGNVMCQSLVLFEDLLVSTTL
PPDDTLNLYTYAILRLTPRALLSNATSWSYLRKGTSVHAGPTSSSSNGTASVERPLQREKLYKG
KDGFVAAGSTTSEVRGAVAWVPILWFQQAEDRMHLCVYQHKNITILLLIPASSLINGDDGIAHV
KRHLLENASQNIVTLELKLSRGWGGENAYHVGGYRYLLVDPDRKVSRASPPGKVTTLSKNIFS*
(+)
MHHTAKLTQCPCFSPLPEPSIYLLQLGKKHGSVSLILSPHNHHQEKIFFERVVTFPGGEALDTF
LSGSTSK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017