Detail information of AT2G03470_circ_g.1


General Information
CircRNA Name AT2G03470_circ_g.1
ID in PlantcircBase ath_circ_012678
Alias 2:1045771-1046014
Organism Arabidpsis thaliana
Position chr2: 1045771-1046014  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03470
Parent gene annotation ELM2 domain-containing protein
Parent gene strand -
Alternative splicing AT2G03470_circ_g.2 AT2G03470_circ_g.3
Support reads 1/1
Tissues leaf;flower
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G03470.1:1
AT2G03470.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGACATACATGAGTCGTCTTCCACATTTACTTCTTCACCAAAACCGTCTCTTGAAGCCTTATC
CGTATCTACACAATGAGCATCGTTACTTGATGAGTCttggtagtagatcgttgttcttgttcca
acaatctgatgtgaatctctgatcatcaaatgaatatgaatcttcaccagatctgtggcactct
ctgttttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGGTAGTAGATCGTTGTTCTTGTTCCAACAATCTGATGTGAATCTCTGATCATCAAATGAATA
TGAATCTTCACCAGATCTGTGGCACTCTCTGTTTTTGATTGGGTTGTGACTGAAGATCAAGTTG
GAGTCTTGTAACTCGAAGGACATACATGAGTCGTCTTCCACATTTACTTCTTCACCAAAACCGT
CTCTTGAAGCCTTATCCGTATCTACACAATGAGCATCGTTACTTGATGAGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.213574681
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020