Detail information of AT2G03470_circ_g.2


General Information
CircRNA Name AT2G03470_circ_g.2
ID in PlantcircBase ath_circ_012679
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1045920-1046003  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene AT2G03470
Parent gene annotation ELM2 domain-containing protein
Parent gene strand -
Alternative splicing AT2G03470_circ_g.1 AT2G03470_circ_g.3
Support reads 6
Tissues leaf, aerial
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G03470.2:1
AT2G03470.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCTTGAAGCCTTATCCGTATCTACACAATGAGCATCGTTAatacatgagtcgtcttccacat
ttacttcttcaccaaaaccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATACATGAGTCGTCTTCCACATTTACTTCTTCACCAAAACCGTCTCTTGAAGCCTTATCCGTAT
CTACACAATGAGCATCGTTA
Conservation Information
Conserved circRNAs NA
PMCS 0.104166667
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017