Plant Circular RNA Database

Detail information of Os12g0615500_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os12g0615500_circ_g.2
					
						ID in PlantcircBase
						osa_circ_012309
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 26105172-26111241  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Os12g0615500						
					
						Parent gene annotation
						
							Similar to Hydrolase-like protein. (Os12t0615500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os12g0615500_circ_g.1 Os12g0615500_circ_g.3 Os12g0615500_circ_g.4 Os12g0615500_circ_g.5 Os12g0615500_circ_g.6 Os12g0615500_circ_g.7 Os12g0615500_circ_g.8 Os12g0615500_circ_g.9 Os12g0615500_circ_g.10 						
					
						Support reads
						5
					
						Tissues
						seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os12t0615500-01:8

General Information
CircRNA Name	Os12g0615500_circ_g.2
ID in PlantcircBase	osa_circ_012309
Alias	NA
Organism	Oryza sativa
Position	chr12: 26105172-26111241 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRI
Parent gene	Os12g0615500
Parent gene annotation	Similar to Hydrolase-like protein. (Os12t0615500-01)
Parent gene strand	-
Alternative splicing	Os12g0615500_circ_g.1 Os12g0615500_circ_g.3 Os12g0615500_circ_g.4 Os12g0615500_circ_g.5 Os12g0615500_circ_g.6 Os12g0615500_circ_g.7 Os12g0615500_circ_g.8 Os12g0615500_circ_g.9 Os12g0615500_circ_g.10
Support reads	5
Tissues	seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os12t0615500-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACTCTTCCAACGTTTCATTGTCCTTGTGATGGTCCATTTCATCAGTCATCCCAATGAGCAATGC
CCTTTTGGGGCAAATCCTCTTAACAGCATCCAGTGTctgatcccaacaaagatggacattatga
gaaccagtctgttcacatggagagagaatgtcagcacacaacatgttagtctgaacaatgatac
aacctatt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1086
Transcript exons: 26105172-26105360,26106128-26106207,26106285-26106441,26
106932-26107060,26107212-26107396,26110706-26110934,2611
1125-26111241
CTGATCCCAACAAAGATGGACATTATGAGAACCAGTCTGTTCACATGGAGAGAGAATGTCAGCA
CACAACATGTTAGTCTGAACAATGATACAACCTATTATGGCTAAATAACGAGAAATTCAAGCAA
TCAGTGATAATGTTCCCATGAATTGCAACAAAAGTCAGTTTTATACATGTTGAAAACTTGGAAA
CGTCTGATATATAAGCAACTTTTGATTTTCTTCCAAAAAGGAAACCCAGACAAACATAGTCCTC
GCCATGGATCACCACCGGCAGGGGAACAAACTCTAGCCCTGAGGTCACAAATGGTTTCTGAAGA
TCACTCTCGATTACTCTCCAATCAAGCTGAGCAACTCGCCGAACCTCTTCCCCTTCCTTTAGTT
TCTTTCTGACCAAGTAAGGAAACTTTTGGGCAATGCTGTTCCCTGTTCATAGCAAATTGGGATA
GATAAATTGGAGTTGGCTCAATATCATTCGTAGGACTAAATGGCTGTACAATCCGAACATCATC
AAGACCCAAGATTGCATCGGCATGCTCATGAGTCAGAATAATCAGAATCAACACAAGGGATTTT
ATGATGGATAAACCACCGTAGAACTTGTTCTCGGAATGTCTTCCCAACATCAATTAGAATATAT
TTGTGTGTGACTTCATCTTGGCAATAATCAATCAGAAGAGAAGTATTGCACCTGTAGGAACCCC
AAGTATTAATCTAGTCCCAGAAAAACGACACACAAGCGGCATCCTCCGGCCATTTCCGGTCACT
CTCATAGCCTCCAAATATAACTACGGAGGGAGTAGAAGCTAACAAGATTCCATCATACGAACTA
AGAAATATGCCTGATCTGTATAGCGCTGTAGTCATCTAAACAACAAATAAAAGCATTGGTCCGT
ACCTTTGTCAAATTTACAGATCAATGTAGACACGCGATCCATCACGGGCTAACTGCACATCTAT
CCCCTCCCTACCCTACCTTCTGGACCACTCTTCCAACGTTTCATTGTCCTTGTGATGGTCCATT
TCATCAGTCATCCCAATGAGCAATGCCCTTTTGGGGCAAATCCTCTTAACAGCATCCAGTGT
Transcript length: 792
Transcript exons: 26105172-26105207,26105473-26105531,26106101-26106206,26
106287-26106434,26106932-26107059,26107212-26107347,2611
0864-26110932,26111132-26111241
CTGATCCCAACAAAGATGGACATTATGAGAACCAGTCCTATAAAGGCAGTCCAAGATGAGCAAA
TCCAGCTGACCCTCTCCAGACTTTGAAATTGCGTGTTCTGTGCTTGGAGGAAACCGTGAAACGT
CTGATATATAAGCAACTTTTGATTTTCTTCCAAAAAGGAAACCCAGACAAACATAGTCCTCGCC
ATGGATCACCGGCAGGGGAACAAACTCTAGCCCTGAGGTCACAAATGGTTTCTGAAGATCACTC
TCGATTACTCTCCAATCAAGCTGAGCAACTCGCCGAACCTCTTCCCCTTCCTTTAGTTTCTTTC
TGACCAAGTAAGGAAACTTTTGGGCAATGCTGTTCATAGCAAATTGGGATAGATAAATTGGAGT
TGGCTCAATATCATTCGTAGGACTAAATGGCTGTACAATCCGAACATCATCAAGACCCAAGATT
GCATCGGCATGCTCATGAGTCAGAATAATAGAATCAACACAAGGGATTTTATGATGGATAAACC
ACCGTAGAACTTGTTCTCGGAATGTCTTCCCAACATCAATTAGAATATATTTGTGTGTGACTTC
ATCTTGGCAATAATCAATCAGAAGAGAAGTATTGCACCTTTGTCAAATTTACAGATCAATGTAG
ACACGCGATCCATCACGGGCTAACTGCACATCTATCCCCTCCCTTCTGGACCACTCTTCCAACG
TTTCATTGTCCTTGTGATGGTCCATTTCATCAGTCATCCCAATGAGCAATGCCCTTTTGGGGCA
AATCCTCTTAACAGCATCCAGTGT
Transcript length: 964
Transcript exons: 26105172-26105296,26106127-26106207,26106283-26106441,26
106932-26107059,26107212-26107357,26110725-26110934,2611
1127-26111241
CTGATCCCAACAAAGATGGACATTATGAGAACCAGTCTGTTCACATGGAGAGAGAATGTCAGCA
CACAACATGTTAGTCTGAACAATGATACAACCTATTATGGCTAAATAACGAGAAATTCAAGGAA
ACGTCTGATATATAAGCAACTTTTGATTTTCTTCCAAAAAGGAAACCCAGACAAACATAGTCCT
CGCCATGGATCACCTTACCGGCAGGGGAACAAACTCTAGCCCTGAGGTCACAAATGGTTTCTGA
AGATCACTCTCGATTACTCTCCAATCAAGCTGAGCAACTCGCCGAACCTCTTCCCCTTCCTTTA
GTTTCTTTCTGACCAAGTAAGGAAACTTTTGGGCAATGCTGTTCCCTGTTCATAGCAAATTGGG
ATAGATAAATTGGAGTTGGCTCAATATCATTCGTAGGACTAAATGGCTGTACAATCCGAACATC
ATCAAGACCCAAGATTGCATCGGCATGCTCATGAGTCAGAATAATAGAATCAACACAAGGGATT
TTATGATGGATAAACCACCGTAGAACTTGTTCTCGGAATGTCTTCCCAACATCAATTAGAATAT
ATTTGTGTGTGACTTCATCTTGGCAATAATCAATCAGAAGAGAAGTATTGCACCTGTAGGAACC
CGGTCACTCTCATAGCCTCCAAATATAACTACGGAGGGAGTAGAAGCTAACAAGATTCCATCAT
ACGAACTAAGAAATATGCCTGATCTGTATAGCGCTGTAGTCATCTAAACAACAAATAAAAGCAT
TGGTCCGTACCTTTGTCAAATTTACAGATCAATGTAGACACGCGATCCATCACGGGCTAACTGC
ACATCTATCCCCTCCCTCCTACCTTCTGGACCACTCTTCCAACGTTTCATTGTCCTTGTGATGG
TCCATTTCATCAGTCATCCCAATGAGCAATGCCCTTTTGGGGCAAATCCTCTTAACAGCATCCA
GTGT
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	ACTCTTCCAACGTTTCATTGTCCTTGTGATGGTCCATTTCATCAGTCATCCCAATGAGCAATGC CCTTTTGGGGCAAATCCTCTTAACAGCATCCAGTGTctgatcccaacaaagatggacattatga gaaccagtctgttcacatggagagagaatgtcagcacacaacatgttagtctgaacaatgatac aacctatt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1086 Transcript exons: 26105172-26105360,26106128-26106207,26106285-26106441,26 106932-26107060,26107212-26107396,26110706-26110934,2611 1125-26111241 CTGATCCCAACAAAGATGGACATTATGAGAACCAGTCTGTTCACATGGAGAGAGAATGTCAGCA CACAACATGTTAGTCTGAACAATGATACAACCTATTATGGCTAAATAACGAGAAATTCAAGCAA TCAGTGATAATGTTCCCATGAATTGCAACAAAAGTCAGTTTTATACATGTTGAAAACTTGGAAA CGTCTGATATATAAGCAACTTTTGATTTTCTTCCAAAAAGGAAACCCAGACAAACATAGTCCTC GCCATGGATCACCACCGGCAGGGGAACAAACTCTAGCCCTGAGGTCACAAATGGTTTCTGAAGA TCACTCTCGATTACTCTCCAATCAAGCTGAGCAACTCGCCGAACCTCTTCCCCTTCCTTTAGTT TCTTTCTGACCAAGTAAGGAAACTTTTGGGCAATGCTGTTCCCTGTTCATAGCAAATTGGGATA GATAAATTGGAGTTGGCTCAATATCATTCGTAGGACTAAATGGCTGTACAATCCGAACATCATC AAGACCCAAGATTGCATCGGCATGCTCATGAGTCAGAATAATCAGAATCAACACAAGGGATTTT ATGATGGATAAACCACCGTAGAACTTGTTCTCGGAATGTCTTCCCAACATCAATTAGAATATAT TTGTGTGTGACTTCATCTTGGCAATAATCAATCAGAAGAGAAGTATTGCACCTGTAGGAACCCC AAGTATTAATCTAGTCCCAGAAAAACGACACACAAGCGGCATCCTCCGGCCATTTCCGGTCACT CTCATAGCCTCCAAATATAACTACGGAGGGAGTAGAAGCTAACAAGATTCCATCATACGAACTA AGAAATATGCCTGATCTGTATAGCGCTGTAGTCATCTAAACAACAAATAAAAGCATTGGTCCGT ACCTTTGTCAAATTTACAGATCAATGTAGACACGCGATCCATCACGGGCTAACTGCACATCTAT CCCCTCCCTACCCTACCTTCTGGACCACTCTTCCAACGTTTCATTGTCCTTGTGATGGTCCATT TCATCAGTCATCCCAATGAGCAATGCCCTTTTGGGGCAAATCCTCTTAACAGCATCCAGTGT Transcript length: 792 Transcript exons: 26105172-26105207,26105473-26105531,26106101-26106206,26 106287-26106434,26106932-26107059,26107212-26107347,2611 0864-26110932,26111132-26111241 CTGATCCCAACAAAGATGGACATTATGAGAACCAGTCCTATAAAGGCAGTCCAAGATGAGCAAA TCCAGCTGACCCTCTCCAGACTTTGAAATTGCGTGTTCTGTGCTTGGAGGAAACCGTGAAACGT CTGATATATAAGCAACTTTTGATTTTCTTCCAAAAAGGAAACCCAGACAAACATAGTCCTCGCC ATGGATCACCGGCAGGGGAACAAACTCTAGCCCTGAGGTCACAAATGGTTTCTGAAGATCACTC TCGATTACTCTCCAATCAAGCTGAGCAACTCGCCGAACCTCTTCCCCTTCCTTTAGTTTCTTTC TGACCAAGTAAGGAAACTTTTGGGCAATGCTGTTCATAGCAAATTGGGATAGATAAATTGGAGT TGGCTCAATATCATTCGTAGGACTAAATGGCTGTACAATCCGAACATCATCAAGACCCAAGATT GCATCGGCATGCTCATGAGTCAGAATAATAGAATCAACACAAGGGATTTTATGATGGATAAACC ACCGTAGAACTTGTTCTCGGAATGTCTTCCCAACATCAATTAGAATATATTTGTGTGTGACTTC ATCTTGGCAATAATCAATCAGAAGAGAAGTATTGCACCTTTGTCAAATTTACAGATCAATGTAG ACACGCGATCCATCACGGGCTAACTGCACATCTATCCCCTCCCTTCTGGACCACTCTTCCAACG TTTCATTGTCCTTGTGATGGTCCATTTCATCAGTCATCCCAATGAGCAATGCCCTTTTGGGGCA AATCCTCTTAACAGCATCCAGTGT Transcript length: 964 Transcript exons: 26105172-26105296,26106127-26106207,26106283-26106441,26 106932-26107059,26107212-26107357,26110725-26110934,2611 1127-26111241 CTGATCCCAACAAAGATGGACATTATGAGAACCAGTCTGTTCACATGGAGAGAGAATGTCAGCA CACAACATGTTAGTCTGAACAATGATACAACCTATTATGGCTAAATAACGAGAAATTCAAGGAA ACGTCTGATATATAAGCAACTTTTGATTTTCTTCCAAAAAGGAAACCCAGACAAACATAGTCCT CGCCATGGATCACCTTACCGGCAGGGGAACAAACTCTAGCCCTGAGGTCACAAATGGTTTCTGA AGATCACTCTCGATTACTCTCCAATCAAGCTGAGCAACTCGCCGAACCTCTTCCCCTTCCTTTA GTTTCTTTCTGACCAAGTAAGGAAACTTTTGGGCAATGCTGTTCCCTGTTCATAGCAAATTGGG ATAGATAAATTGGAGTTGGCTCAATATCATTCGTAGGACTAAATGGCTGTACAATCCGAACATC ATCAAGACCCAAGATTGCATCGGCATGCTCATGAGTCAGAATAATAGAATCAACACAAGGGATT TTATGATGGATAAACCACCGTAGAACTTGTTCTCGGAATGTCTTCCCAACATCAATTAGAATAT ATTTGTGTGTGACTTCATCTTGGCAATAATCAATCAGAAGAGAAGTATTGCACCTGTAGGAACC CGGTCACTCTCATAGCCTCCAAATATAACTACGGAGGGAGTAGAAGCTAACAAGATTCCATCAT ACGAACTAAGAAATATGCCTGATCTGTATAGCGCTGTAGTCATCTAAACAACAAATAAAAGCAT TGGTCCGTACCTTTGTCAAATTTACAGATCAATGTAGACACGCGATCCATCACGGGCTAACTGC ACATCTATCCCCTCCCTCCTACCTTCTGGACCACTCTTCCAACGTTTCATTGTCCTTGTGATGG TCCATTTCATCAGTCATCCCAATGAGCAATGCCCTTTTGGGGCAAATCCTCTTAACAGCATCCA GTGT
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_009972 						
					
						PMCS
						1.003705938

Conservation Information
Conserved circRNAs	osi_circ_009972
PMCS	1.003705938

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							26111171-26105523(+)
26106941-26110877(-)
26106201-26111189(-)
						
						Potential amino acid sequence
						
							MVHFISHPNEQCPFGANPLNSIQCLIPTKMDIMRTSPIKAVQDEQIQLTLSRL*(+)
MNSIAQKFPYLVRKKLKEGEEVRRVAQLDWRVIESDLQKPFVTSGLEFVPLPVIHGEDYVCLGF
LFGRKSKVAYISDVSRFPPSTEHAISKSGEGQLDLLILDCLYRTGSHNVHLCWDQTLDAVKRIC
PKRALLIGMTDEMDHHKDNETLEEWSRREGIDVQLARDGSRVYIDL*(-)
MARTMFVWVSFLEENQKLLIYQTFHGFLQAQNTQFQSLERVSWICSSWTAFIGLVLIMSIFVGI
RHWMLLRGFAPKGHCSLG*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	26111171-26105523(+) 26106941-26110877(-) 26106201-26111189(-)
Potential amino acid sequence	MVHFISHPNEQCPFGANPLNSIQCLIPTKMDIMRTSPIKAVQDEQIQLTLSRL(+) MNSIAQKFPYLVRKKLKEGEEVRRVAQLDWRVIESDLQKPFVTSGLEFVPLPVIHGEDYVCLGF LFGRKSKVAYISDVSRFPPSTEHAISKSGEGQLDLLILDCLYRTGSHNVHLCWDQTLDAVKRIC PKRALLIGMTDEMDHHKDNETLEEWSRREGIDVQLARDGSRVYIDL(-) MARTMFVWVSFLEENQKLLIYQTFHGFLQAQNTQFQSLERVSWICSSWTAFIGLVLIMSIFVGI RHWMLLRGFAPKGHCSLG*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os12g0615500_circ_g.2

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