Plant Circular RNA Database

Detail information of Os12g0615500_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os12g0615500_circ_g.1
					
						ID in PlantcircBase
						osa_circ_012308
					
						Alias
						Os_ciR946
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 26104960-26110932  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI, find_circ
					
						Parent gene
						
							Os12g0615500						
					
						Parent gene annotation
						
							Similar to Hydrolase-like protein. (Os12t0615500-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os12g0615500_circ_g.2 Os12g0615500_circ_g.3 Os12g0615500_circ_g.4 Os12g0615500_circ_g.5 Os12g0615500_circ_g.6 Os12g0615500_circ_g.7 Os12g0615500_circ_g.8 Os12g0615500_circ_g.9 Os12g0615500_circ_g.10 						
					
						Support reads
						129/3
					
						Tissues
						root/seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os12t0615500-01:8

General Information
CircRNA Name	Os12g0615500_circ_g.1
ID in PlantcircBase	osa_circ_012308
Alias	Os_ciR946
Organism	Oryza sativa
Position	chr12: 26104960-26110932 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRI, find_circ
Parent gene	Os12g0615500
Parent gene annotation	Similar to Hydrolase-like protein. (Os12t0615500-01)
Parent gene strand	-
Alternative splicing	Os12g0615500_circ_g.2 Os12g0615500_circ_g.3 Os12g0615500_circ_g.4 Os12g0615500_circ_g.5 Os12g0615500_circ_g.6 Os12g0615500_circ_g.7 Os12g0615500_circ_g.8 Os12g0615500_circ_g.9 Os12g0615500_circ_g.10
Support reads	129/3
Tissues	root/seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os12t0615500-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CTAAACAACAAATAAAAGCATTGGTCCGTACCTTTGTCAAATTTACAGATCAATGTAGACACGC
GATCCATCACGGGCTAACTGCACATCTATCCCCTCCcttctggaccactcttccaacgtttcat
tgtccttgtgatggtccatctcatgagtcatcccaatgagcaatgcccttttggggcaaatcct
cttaacag

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 792
Transcript exons: 26104960-26105069,26105172-26105207,26105473-26105531,26
106101-26106206,26106287-26106434,26106932-26107059,2610
7212-26107347,26110864-26110932
CTTCTGGACCACTCTTCCAACGTTTCATTGTCCTTGTGATGGTCCATCTCATGAGTCATCCCAA
TGAGCAATGCCCTTTTGGGGCAAATCCTCTTAACAGCATCCAGTGTCTGATCCCAACAAAGATG
GACATTATGAGAACCAGTCCTATAAAGGCAGTCCAAGATGAGCAAATCCAGCTGACCCTCTCCA
GACTTTGAAATTGCGTGTTCTGTGCTTGGAGGAAACCGTGAAACGTCTGATATATAAGCAACTT
TTGATTTTCTTCCAAAAAGGAAACCCAGACAAACATAGTCCTCGCCATGGATCACCGGCAGGGG
AACAAACTCTAGCCCTGAGGTCACAAATGGTTTCTGAAGATCACTCTCGATTACTCTCCAATCA
AGCTGAGCAACTCGCCGAACCTCTTCCCCTTCCTTTAGTTTCTTTCTGACCAAGTAAGGAAACT
TTTGGGCAATGCTGTTCATAGCAAATTGGGATAGATAAATTGGAGTTGGCTCAATATCATTCGT
AGGACTAAATGGCTGTACAATCCGAACATCATCAAGACCCAAGATTGCATCGGCATGCTCATGA
GTCAGAATAATAGAATCAACACAAGGGATTTTATGATGGATAAACCACCGTAGAACTTGTTCTC
GGAATGTCTTCCCAACATCAATTAGAATATATTTGTGTGTGACTTCATCTTGGCAATAATCAAT
CAGAAGAGAAGTATTGCACCTTTGTCAAATTTACAGATCAATGTAGACACGCGATCCATCACGG
GCTAACTGCACATCTATCCCCTCC
						
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	CTAAACAACAAATAAAAGCATTGGTCCGTACCTTTGTCAAATTTACAGATCAATGTAGACACGC GATCCATCACGGGCTAACTGCACATCTATCCCCTCCcttctggaccactcttccaacgtttcat tgtccttgtgatggtccatctcatgagtcatcccaatgagcaatgcccttttggggcaaatcct cttaacag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 792 Transcript exons: 26104960-26105069,26105172-26105207,26105473-26105531,26 106101-26106206,26106287-26106434,26106932-26107059,2610 7212-26107347,26110864-26110932 CTTCTGGACCACTCTTCCAACGTTTCATTGTCCTTGTGATGGTCCATCTCATGAGTCATCCCAA TGAGCAATGCCCTTTTGGGGCAAATCCTCTTAACAGCATCCAGTGTCTGATCCCAACAAAGATG GACATTATGAGAACCAGTCCTATAAAGGCAGTCCAAGATGAGCAAATCCAGCTGACCCTCTCCA GACTTTGAAATTGCGTGTTCTGTGCTTGGAGGAAACCGTGAAACGTCTGATATATAAGCAACTT TTGATTTTCTTCCAAAAAGGAAACCCAGACAAACATAGTCCTCGCCATGGATCACCGGCAGGGG AACAAACTCTAGCCCTGAGGTCACAAATGGTTTCTGAAGATCACTCTCGATTACTCTCCAATCA AGCTGAGCAACTCGCCGAACCTCTTCCCCTTCCTTTAGTTTCTTTCTGACCAAGTAAGGAAACT TTTGGGCAATGCTGTTCATAGCAAATTGGGATAGATAAATTGGAGTTGGCTCAATATCATTCGT AGGACTAAATGGCTGTACAATCCGAACATCATCAAGACCCAAGATTGCATCGGCATGCTCATGA GTCAGAATAATAGAATCAACACAAGGGATTTTATGATGGATAAACCACCGTAGAACTTGTTCTC GGAATGTCTTCCCAACATCAATTAGAATATATTTGTGTGTGACTTCATCTTGGCAATAATCAAT CAGAAGAGAAGTATTGCACCTTTGTCAAATTTACAGATCAATGTAGACACGCGATCCATCACGG GCTAACTGCACATCTATCCCCTCC
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_009971 						
					
						PMCS
						0.496536761

Conservation Information
Conserved circRNAs	osi_circ_009971
PMCS	0.496536761

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							26106941-26110877(-)
26105013-26110924(-)
						
						Potential amino acid sequence
						
							MNSIAQKFPYLVRKKLKEGEEVRRVAQLDWRVIESDLQKPFVTSGLEFVPLPVIHGEDYVCLGF
LFGRKSKVAYISDVSRFPPSTEHAISKSGEGQLDLLILDCLYRTGSHNVHLCWDQTLDAVKRIC
PKRALLIGMTHEMDHHKDNETLEEWSRREGIDVQLARDGSRVYIDL*(-)
MRWTITRTMKRWKSGPEGRG*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	26106941-26110877(-) 26105013-26110924(-)
Potential amino acid sequence	MNSIAQKFPYLVRKKLKEGEEVRRVAQLDWRVIESDLQKPFVTSGLEFVPLPVIHGEDYVCLGF LFGRKSKVAYISDVSRFPPSTEHAISKSGEGQLDLLILDCLYRTGSHNVHLCWDQTLDAVKRIC PKRALLIGMTHEMDHHKDNETLEEWSRREGIDVQLARDGSRVYIDL(-) MRWTITRTMKRWKSGPEGRG(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os12g0615500_circ_g.1

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