Detail information of BGIOSGA014409_circ_g.1


General Information
CircRNA Name BGIOSGA014409_circ_g.1
ID in PlantcircBase osi_circ_014739
Alias Chr04:31112279_31113165(MH63RS2), Chr04:31196136_31197022(ZS97RS2), Chr04:31112279_31113165(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 29261366-29262252  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA014409
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014409-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCATCATGCACTTCGTTACCACGATAAATACTTCCAACATGTTTAAAAAACTTTGCTGAGTTC
TTAGCTTCCCTTAGCATGTAATCTGGTGGTTGACCCcctgcaatggcgaccatcgctcattggg
atcaaatttcagaagcccctttaggaaatcaaccagtatcacccgctctgccttttctgtctct
gaatcaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCAATGGCGACCATCGCTCATTGGGATCAAATTTCAGAAGCCCCTTTAGGAAATCAACCAG
TATCACCCGCTCTGCCTTTTCTGTCTCTGAATCAAAATGCAAGACCTGAGAACATATATCAAAC
TTCCAAGCTTTATTCTAACAGCTCTAATTTGCAGATTCAGGAGAGCCATACAATAATAACTAAT
GAGAATTTTATAAAACATTAAGCCCAATTTCATATTCCATATCGATCATTAAACCTGTGCAAAA
AGGCATCCGGTTTAGCTCGGTTTGGAGTGAGTAGTTTTATTTCCTTGATTCCTGTAGGAACACA
TACTTTCCTTTCTTTTTCATTTCTAGGAGAATACCTTATTGTAATAGTTATCCTTGATTGCACA
ACTCAAGACAACAGCACATCATTTTTCAGAGAGAAAAAAGTACACAGGAATATAATATGGTCTA
ATTGAAACAATGTAATTACAGGTGCAAGAATCAAAATAAAGAGTGCACATGATAGTGGTGCAAG
TCAGAAAAATCAAAGAGAAATCACAAAAAACAAAGAAAACAAACCTGTCAGTTCTGAATTTTTC
CAAGGGTAACTGCATATGAGTTGGTCAAGCCTGAGTTGTGGGAAGTACCATTTCACTACCTTTG
GCTTTTCAGACTCCCTCTGTATTTGGCATAGATAGTAAGATAGTGCTTATGATGGAATTAAGAA
AAATGATCATGATTCTATAAATGAAATTACAAGCTTACCACTTCAATCTCCTCTTCAGTTAACA
ATCTGTAAGAACTGCCAATACCATCATGCACTTCGTTACCACGATAAATACTTCCAACATGTTT
AAAAAACTTTGCTGAGTTCTTAGCTTCCCTTAGCATGTAATCTGGTGGTTGACCC
Conservation Information
Conserved circRNAs osa_circ_041859
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021