Detail information of AT2G03120_circ_g.4


General Information
CircRNA Name AT2G03120_circ_g.4
ID in PlantcircBase ath_circ_012641
Alias NA
Organism Arabidpsis thaliana
Position chr2: 938692-939212  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G03120
Parent gene annotation Signal peptide peptidase
Parent gene strand +
Alternative splicing AT2G03120_circ_g.2 AT2G03120_circ_g.3 AT2G03120_circ_g.5
Support reads 2
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03120.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTGACTTGCAGGCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATG
GTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGctttggaggtagagttcacaaagtccca
agttgttgcgggaatccctggaacattcttctgtgcgtggtatgcgtggaaaaaacattggctg
gctaacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGGAGGTAGAGTTCACAAAGTCCCAAGTTGTTGCGGGAATCCCTGGAACATTCTTCTGTGC
GTGGTATGCGTGGAAAAAACATTGGCTGGCTAACAATATCCTCGGCCTTTCCTTCTGCATTCAG
GTTACTTCCCTTGCACTTTATGGGAATACATAAACTCTGAAGCTTCACTGTTATAACATAATAT
TTAAGTTTAAAGTGAACTGGAGTCACTGTTGTTGAGTGTCTCTTTTTTTACTAATTAATGCCGT
TGCCAATACAGGGAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTGGT
AAGAACTGCATCTTTTGAATGCTATTCTTGAAAACTTGTTTGGACTTCTAGATGAAAAGAAAAT
TCGTTTGAAAATGACTCAATCATTCGGTGTTTGTTATGCTTGACTTGCAGGCAGGACTATTTTT
CTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCT
CCAATTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.211946467
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017