Detail information of AT2G03120_circ_g.5


General Information
CircRNA Name AT2G03120_circ_g.5
ID in PlantcircBase ath_circ_012642
Alias NA
Organism Arabidpsis thaliana
Position chr2: 938959-939381  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G03120
Parent gene annotation Signal peptide peptidase
Parent gene strand +
Alternative splicing AT2G03120_circ_g.2 AT2G03120_circ_g.3 AT2G03120_circ_g.4
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03120.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTAATCTCATTGTTACATATTTCTTTCAGCTCTTATTCCCTACGGGTGATGCTCTAAGACCCT
ATTCTATGCTTGGTCTTGGTGACATTGTCATTCCGGggaattgagatgctctctctcggatcat
tcaagactggtgccatccttttggtaagaactgcatcttttgaatgctattcttgaaaacttgt
ttggactt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAATTGAGATGCTCTCTCTCGGATCATTCAAGACTGGTGCCATCCTTTTGGTAAGAACTGCAT
CTTTTGAATGCTATTCTTGAAAACTTGTTTGGACTTCTAGATGAAAAGAAAATTCGTTTGAAAA
TGACTCAATCATTCGGTGTTTGTTATGCTTGACTTGCAGGCAGGACTATTTTTCTATGATATCT
TCTGGGTTTTCTTTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGGT
TAGTAAAAATGCCTCAAAAGTACACACCATACCAAATTGATTCTGATTTGTTCTTAGTCAATTT
TTCAGTAATCTCATTGTTACATATTTCTTTCAGCTCTTATTCCCTACGGGTGATGCTCTAAGAC
CCTATTCTATGCTTGGTCTTGGTGACATTGTCATTCCGG
Conservation Information
Conserved circRNAs NA
PMCS 0.206734614
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017