Plant Circular RNA Database

Detail information of AT5G64740_circ_g.5

			
						 General Information
					
						CircRNA Name
						AT5G64740_circ_g.5
					
						ID in PlantcircBase
						ath_circ_045793
					
						Alias
						5:25882030-25883655
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 25882030-25883655  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT5G64740						
					
						Parent gene annotation
						
							Cellulose synthase A catalytic subunit 6
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT5G64740_circ_g.4 AT5G64740_circ_g.6 AT5G64740_circ_g.7 AT5G64740_circ_g.8 AT5G64740_circ_g.9 AT5G64740_circ_g.10 AT5G64740_circ_g.11 AT5G64740_circ_g.12 AT5G64740_circ_g.13 						
					
						Support reads
						1/1
					
						Tissues
						leaf;flower
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G64740.1:5

General Information
CircRNA Name	AT5G64740_circ_g.5
ID in PlantcircBase	ath_circ_045793
Alias	5:25882030-25883655
Organism	Arabidpsis thaliana
Position	chr5: 25882030-25883655 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT5G64740
Parent gene annotation	Cellulose synthase A catalytic subunit 6
Parent gene strand	+
Alternative splicing	AT5G64740_circ_g.4 AT5G64740_circ_g.6 AT5G64740_circ_g.7 AT5G64740_circ_g.8 AT5G64740_circ_g.9 AT5G64740_circ_g.10 AT5G64740_circ_g.11 AT5G64740_circ_g.12 AT5G64740_circ_g.13
Support reads	1/1
Tissues	leaf;flower
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G64740.1:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TATTGAGCCTCGTGCTCCCGAATGGTATTTCTGCCATAAAATGGACTACTTGAAGAATAAAGTT
CATCCCGCATTTGTTAGGGAGCGGCGAGCCATGAAGataagatcagtccaagagctgagtggac
agacatgtcaaatctgcagagatgagatcgaattgactgttgatggagaaccgtttgtggcatg
taacgaat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1290
Transcript exons: 25882030-25882225,25882314-25882516,25882600-25882877,25
882960-25883226,25883310-25883655
ATAAGATCAGTCCAAGAGCTGAGTGGACAGACATGTCAAATCTGCAGAGATGAGATCGAATTGA
CTGTTGATGGAGAACCGTTTGTGGCATGTAACGAATGTGCATTCCCTGTGTGTAGACCTTGCTA
TGAGTACGAAAGACGAGAAGGCAATCAAGCTTGTCCACAGTGCAAAACCCGTTTCAAACGTCTT
AAAGGAAGTCCAAGAGTTGAAGGTGATGAAGAGGAAGATGACATTGATGATTTAGACAATGAGT
TTGAGTATGGAAATAATGGGATTGGATTTGATCAGGTTTCTGAAGGTATGTCAATCTCTCGTCG
CAACTCCGGTTTCCCACAATCTGATTTGGATTCAGCTCCACCTGGCTCTCAGATTCCATTGCTG
ACTTACGGCGACGAGGACGTTGAGATTTCTTCTGATAGACATGCTCTTATTGTTCCTCCTTCAC
TTGGTGGTCATGGCAATAGAGTTCATCCTGTTTCTCTTTCTGACCCGACCGTGGCTGCACATCC
AAGGCCTATGGTACCTCAGAAAGATCTTGCGGTTTATGGTTATGGAAGTGTCGCTTGGAAAGAT
CGGATGGAGGAATGGAAGAGAAAGCAGAATGAGAAACTTCAGGTTGTTAGGCATGAAGGAGATC
CTGATTTTGAAGATGGTGATGATGCTGATTTTCCAATGATGGATGAGGGAAGGCAGCCATTGTC
TAGGAAGATACCAATCAAATCGAGCAAGATAAATCCTTACCGGATGTTAATTGTGCTACGTCTT
GTGATTCTTGGTCTCTTCTTTCACTACCGTATTCTTCACCCCGTCAAAGATGCATATGCTTTGT
GGCTTATTTCTGTTATATGTGAGATATGGTTTGCTGTTTCATGGGTTCTTGATCAGTTCCCTAA
ATGGTACCCTATCGAGCGAGAAACGTACTTGGACCGACTCTCATTAAGATATGAGAAAGAAGGG
AAACCGTCGGGACTATCCCCTGTGGATGTATTTGTTAGTACAGTGGATCCATTGAAAGAGCCTC
CGCTTATTACTGCAAATACTGTCTTGTCTATTCTTGCTGTTGATTATCCTGTCGATAAGGTTGC
TTGTTACGTATCTGATGATGGTGCTGCTATGCTTACTTTCGAAGCTCTTTCTGAGACCGCTGAA
TTCGCAAGGAAATGGGTTCCTTTCTGCAAGAAATATTGTATTGAGCCTCGTGCTCCCGAATGGT
ATTTCTGCCATAAAATGGACTACTTGAAGAATAAAGTTCATCCCGCATTTGTTAGGGAGCGGCG
AGCCATGAAG
						
					

						Genomic sequence
						
							ATAAGATCAGTCCAAGAGCTGAGTGGACAGACATGTCAAATCTGCAGAGATGAGATCGAATTGA
CTGTTGATGGAGAACCGTTTGTGGCATGTAACGAATGTGCATTCCCTGTGTGTAGACCTTGCTA
TGAGTACGAAAGACGAGAAGGCAATCAAGCTTGTCCACAGTGCAAAACCCGTTTCAAACGTCTT
AAAGGTTCGTTGTTTGTTAGACCAAATTTCTTTGGTTTTTTGTGAATGTAGAAGATTTTCTGAT
TTGTTCGGCCTATGTTGTTGTTTGTTAGGAAGTCCAAGAGTTGAAGGTGATGAAGAGGAAGATG
ACATTGATGATTTAGACAATGAGTTTGAGTATGGAAATAATGGGATTGGATTTGATCAGGTTTC
TGAAGGTATGTCAATCTCTCGTCGCAACTCCGGTTTCCCACAATCTGATTTGGATTCAGCTCCA
CCTGGCTCTCAGATTCCATTGCTGACTTACGGCGACGAGGTAAAAATCTCAGAATGTATCCACA
TTGTATAACCCATCTTCAGTAATTGGCTCACTCAGATTTCTCTTTTGTTTTATTACAGGACGTT
GAGATTTCTTCTGATAGACATGCTCTTATTGTTCCTCCTTCACTTGGTGGTCATGGCAATAGAG
TTCATCCTGTTTCTCTTTCTGACCCGACCGTGGCTGCACATCCAAGGCCTATGGTACCTCAGAA
AGATCTTGCGGTTTATGGTTATGGAAGTGTCGCTTGGAAAGATCGGATGGAGGAATGGAAGAGA
AAGCAGAATGAGAAACTTCAGGTTGTTAGGCATGAAGGAGATCCTGATTTTGAAGATGGTGATG
ATGCTGATTTTCCAATGTAAGGCAAAGAATATAATTTTTTTTGTTGATGTCTTGTTCCGTTGCA
GTGATATTTATCAAGCCTTTTTTTTCCATTTTAGGATGGATGAGGGAAGGCAGCCATTGTCTAG
GAAGATACCAATCAAATCGAGCAAGATAAATCCTTACCGGATGTTAATTGTGCTACGTCTTGTG
ATTCTTGGTCTCTTCTTTCACTACCGTATTCTTCACCCCGTCAAAGATGCATATGCTTTGTGGC
TTATTTCTGTTATATGTGAGATATGGTTTGCTGTTTCATGGGTTCTTGATCAGTTCCCTAAATG
GTACCCTATCGAGCGAGAAACGTACTTGGACCGACTCTCATTAAGGTACTTACATCTTGTGGGT
TATTACACTTGGAAATGTTAAAACTTTGTTTTGGGGATATAATCCTTATTTTTTTTGTTTGCAG
ATATGAGAAAGAAGGGAAACCGTCGGGACTATCCCCTGTGGATGTATTTGTTAGTACAGTGGAT
CCATTGAAAGAGCCTCCGCTTATTACTGCAAATACTGTCTTGTCTATTCTTGCTGTTGATTATC
CTGTCGATAAGGTTGCTTGTTACGTATCTGATGATGGTGCTGCTATGCTTACTTTCGAAGCTCT
TTCTGAGACCGCTGAATTCGCAAGGAAATGGGTTCCTTTCTGCAAGAAATATTGTATTGAGCCT
CGTGCTCCCGAATGGTATTTCTGCCATAAAATGGACTACTTGAAGAATAAAGTTCATCCCGCAT
TTGTTAGGGAGCGGCGAGCCATGAAG
						
					

			
		

Sequences
Splice junction sequence	TATTGAGCCTCGTGCTCCCGAATGGTATTTCTGCCATAAAATGGACTACTTGAAGAATAAAGTT CATCCCGCATTTGTTAGGGAGCGGCGAGCCATGAAGataagatcagtccaagagctgagtggac agacatgtcaaatctgcagagatgagatcgaattgactgttgatggagaaccgtttgtggcatg taacgaat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1290 Transcript exons: 25882030-25882225,25882314-25882516,25882600-25882877,25 882960-25883226,25883310-25883655 ATAAGATCAGTCCAAGAGCTGAGTGGACAGACATGTCAAATCTGCAGAGATGAGATCGAATTGA CTGTTGATGGAGAACCGTTTGTGGCATGTAACGAATGTGCATTCCCTGTGTGTAGACCTTGCTA TGAGTACGAAAGACGAGAAGGCAATCAAGCTTGTCCACAGTGCAAAACCCGTTTCAAACGTCTT AAAGGAAGTCCAAGAGTTGAAGGTGATGAAGAGGAAGATGACATTGATGATTTAGACAATGAGT TTGAGTATGGAAATAATGGGATTGGATTTGATCAGGTTTCTGAAGGTATGTCAATCTCTCGTCG CAACTCCGGTTTCCCACAATCTGATTTGGATTCAGCTCCACCTGGCTCTCAGATTCCATTGCTG ACTTACGGCGACGAGGACGTTGAGATTTCTTCTGATAGACATGCTCTTATTGTTCCTCCTTCAC TTGGTGGTCATGGCAATAGAGTTCATCCTGTTTCTCTTTCTGACCCGACCGTGGCTGCACATCC AAGGCCTATGGTACCTCAGAAAGATCTTGCGGTTTATGGTTATGGAAGTGTCGCTTGGAAAGAT CGGATGGAGGAATGGAAGAGAAAGCAGAATGAGAAACTTCAGGTTGTTAGGCATGAAGGAGATC CTGATTTTGAAGATGGTGATGATGCTGATTTTCCAATGATGGATGAGGGAAGGCAGCCATTGTC TAGGAAGATACCAATCAAATCGAGCAAGATAAATCCTTACCGGATGTTAATTGTGCTACGTCTT GTGATTCTTGGTCTCTTCTTTCACTACCGTATTCTTCACCCCGTCAAAGATGCATATGCTTTGT GGCTTATTTCTGTTATATGTGAGATATGGTTTGCTGTTTCATGGGTTCTTGATCAGTTCCCTAA ATGGTACCCTATCGAGCGAGAAACGTACTTGGACCGACTCTCATTAAGATATGAGAAAGAAGGG AAACCGTCGGGACTATCCCCTGTGGATGTATTTGTTAGTACAGTGGATCCATTGAAAGAGCCTC CGCTTATTACTGCAAATACTGTCTTGTCTATTCTTGCTGTTGATTATCCTGTCGATAAGGTTGC TTGTTACGTATCTGATGATGGTGCTGCTATGCTTACTTTCGAAGCTCTTTCTGAGACCGCTGAA TTCGCAAGGAAATGGGTTCCTTTCTGCAAGAAATATTGTATTGAGCCTCGTGCTCCCGAATGGT ATTTCTGCCATAAAATGGACTACTTGAAGAATAAAGTTCATCCCGCATTTGTTAGGGAGCGGCG AGCCATGAAG
Genomic sequence	ATAAGATCAGTCCAAGAGCTGAGTGGACAGACATGTCAAATCTGCAGAGATGAGATCGAATTGA CTGTTGATGGAGAACCGTTTGTGGCATGTAACGAATGTGCATTCCCTGTGTGTAGACCTTGCTA TGAGTACGAAAGACGAGAAGGCAATCAAGCTTGTCCACAGTGCAAAACCCGTTTCAAACGTCTT AAAGGTTCGTTGTTTGTTAGACCAAATTTCTTTGGTTTTTTGTGAATGTAGAAGATTTTCTGAT TTGTTCGGCCTATGTTGTTGTTTGTTAGGAAGTCCAAGAGTTGAAGGTGATGAAGAGGAAGATG ACATTGATGATTTAGACAATGAGTTTGAGTATGGAAATAATGGGATTGGATTTGATCAGGTTTC TGAAGGTATGTCAATCTCTCGTCGCAACTCCGGTTTCCCACAATCTGATTTGGATTCAGCTCCA CCTGGCTCTCAGATTCCATTGCTGACTTACGGCGACGAGGTAAAAATCTCAGAATGTATCCACA TTGTATAACCCATCTTCAGTAATTGGCTCACTCAGATTTCTCTTTTGTTTTATTACAGGACGTT GAGATTTCTTCTGATAGACATGCTCTTATTGTTCCTCCTTCACTTGGTGGTCATGGCAATAGAG TTCATCCTGTTTCTCTTTCTGACCCGACCGTGGCTGCACATCCAAGGCCTATGGTACCTCAGAA AGATCTTGCGGTTTATGGTTATGGAAGTGTCGCTTGGAAAGATCGGATGGAGGAATGGAAGAGA AAGCAGAATGAGAAACTTCAGGTTGTTAGGCATGAAGGAGATCCTGATTTTGAAGATGGTGATG ATGCTGATTTTCCAATGTAAGGCAAAGAATATAATTTTTTTTGTTGATGTCTTGTTCCGTTGCA GTGATATTTATCAAGCCTTTTTTTTCCATTTTAGGATGGATGAGGGAAGGCAGCCATTGTCTAG GAAGATACCAATCAAATCGAGCAAGATAAATCCTTACCGGATGTTAATTGTGCTACGTCTTGTG ATTCTTGGTCTCTTCTTTCACTACCGTATTCTTCACCCCGTCAAAGATGCATATGCTTTGTGGC TTATTTCTGTTATATGTGAGATATGGTTTGCTGTTTCATGGGTTCTTGATCAGTTCCCTAAATG GTACCCTATCGAGCGAGAAACGTACTTGGACCGACTCTCATTAAGGTACTTACATCTTGTGGGT TATTACACTTGGAAATGTTAAAACTTTGTTTTGGGGATATAATCCTTATTTTTTTTGTTTGCAG ATATGAGAAAGAAGGGAAACCGTCGGGACTATCCCCTGTGGATGTATTTGTTAGTACAGTGGAT CCATTGAAAGAGCCTCCGCTTATTACTGCAAATACTGTCTTGTCTATTCTTGCTGTTGATTATC CTGTCGATAAGGTTGCTTGTTACGTATCTGATGATGGTGCTGCTATGCTTACTTTCGAAGCTCT TTCTGAGACCGCTGAATTCGCAAGGAAATGGGTTCCTTTCTGCAAGAAATATTGTATTGAGCCT CGTGCTCCCGAATGGTATTTCTGCCATAAAATGGACTACTTGAAGAATAAAGTTCATCCCGCAT TTGTTAGGGAGCGGCGAGCCATGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.484416241

Conservation Information
Conserved circRNAs	NA
PMCS	0.484416241

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							ath-miR414 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	ath-miR414
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT5G64740_circ_g.5

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