Detail information of AT5G64740_circ_g.7


General Information
CircRNA Name AT5G64740_circ_g.7
ID in PlantcircBase ath_circ_045795
Alias Ath_circ_FC3948
Organism Arabidpsis thaliana
Position chr5: 25882030-25884192  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT5G64740
Parent gene annotation Cellulose synthase A catalytic subunit 6
Parent gene strand +
Alternative splicing AT5G64740_circ_g.4 AT5G64740_circ_g.5 AT5G64740_circ_g.6 AT5G64740_circ_g.8 AT5G64740_circ_g.9 AT5G64740_circ_g.10 AT5G64740_circ_g.11 AT5G64740_circ_g.12 AT5G64740_circ_g.13
Support reads 41
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT5G64740.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATGTCGAAAACAACGAGTTGCCTCGATTAGTTTACGTTTCTCGTGAGAAGAGACCCGGATTT
GATCACCATAAGAAGGCTGGAGCTATGAATTCCCTGataagatcagtccaagagctgagtggac
agacatgtcaaatctgcagagatgagatcgaattgactgttgatggagaaccgtttgtggcatg
taacgaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATAAGATCAGTCCAAGAGCTGAGTGGACAGACATGTCAAATCTGCAGAGATGAGATCGAATTGA
CTGTTGATGGAGAACCGTTTGTGGCATGTAACGAATGTGCATTCCCTGTGTGTAGACCTTGCTA
TGAGTACGAAAGACGAGAAGGCAATCAAGCTTGTCCACAGTGCAAAACCCGTTTCAAACGTCTT
AAAGGTTCGTTGTTTGTTAGACCAAATTTCTTTGGTTTTTTGTGAATGTAGAAGATTTTCTGAT
TTGTTCGGCCTATGTTGTTGTTTGTTAGGAAGTCCAAGAGTTGAAGGTGATGAAGAGGAAGATG
ACATTGATGATTTAGACAATGAGTTTGAGTATGGAAATAATGGGATTGGATTTGATCAGGTTTC
TGAAGGTATGTCAATCTCTCGTCGCAACTCCGGTTTCCCACAATCTGATTTGGATTCAGCTCCA
CCTGGCTCTCAGATTCCATTGCTGACTTACGGCGACGAGGTAAAAATCTCAGAATGTATCCACA
TTGTATAACCCATCTTCAGTAATTGGCTCACTCAGATTTCTCTTTTGTTTTATTACAGGACGTT
GAGATTTCTTCTGATAGACATGCTCTTATTGTTCCTCCTTCACTTGGTGGTCATGGCAATAGAG
TTCATCCTGTTTCTCTTTCTGACCCGACCGTGGCTGCACATCCAAGGCCTATGGTACCTCAGAA
AGATCTTGCGGTTTATGGTTATGGAAGTGTCGCTTGGAAAGATCGGATGGAGGAATGGAAGAGA
AAGCAGAATGAGAAACTTCAGGTTGTTAGGCATGAAGGAGATCCTGATTTTGAAGATGGTGATG
ATGCTGATTTTCCAATGTAAGGCAAAGAATATAATTTTTTTTGTTGATGTCTTGTTCCGTTGCA
GTGATATTTATCAAGCCTTTTTTTTCCATTTTAGGATGGATGAGGGAAGGCAGCCATTGTCTAG
GAAGATACCAATCAAATCGAGCAAGATAAATCCTTACCGGATGTTAATTGTGCTACGTCTTGTG
ATTCTTGGTCTCTTCTTTCACTACCGTATTCTTCACCCCGTCAAAGATGCATATGCTTTGTGGC
TTATTTCTGTTATATGTGAGATATGGTTTGCTGTTTCATGGGTTCTTGATCAGTTCCCTAAATG
GTACCCTATCGAGCGAGAAACGTACTTGGACCGACTCTCATTAAGGTACTTACATCTTGTGGGT
TATTACACTTGGAAATGTTAAAACTTTGTTTTGGGGATATAATCCTTATTTTTTTTGTTTGCAG
ATATGAGAAAGAAGGGAAACCGTCGGGACTATCCCCTGTGGATGTATTTGTTAGTACAGTGGAT
CCATTGAAAGAGCCTCCGCTTATTACTGCAAATACTGTCTTGTCTATTCTTGCTGTTGATTATC
CTGTCGATAAGGTTGCTTGTTACGTATCTGATGATGGTGCTGCTATGCTTACTTTCGAAGCTCT
TTCTGAGACCGCTGAATTCGCAAGGAAATGGGTTCCTTTCTGCAAGAAATATTGTATTGAGCCT
CGTGCTCCCGAATGGTATTTCTGCCATAAAATGGACTACTTGAAGAATAAAGTTCATCCCGCAT
TTGTTAGGGAGCGGCGAGCCATGAAGGTTACTAGTTCTTACTTTTTTATAAATTTGATTTGATG
AGAAAAGTTTTGGTCTAATTGATTCTTGCTTTAGAAAAAAAAAATTCATGAGAAAAGTTATCAA
TCTTTTGTTATATGGGCTCTTATGAAAGAAGATGGTGGCTTTGAAAATTGATTTGAAAGATTGT
GTGTTTTACTGGTTTTGACAGAGAGATTATGAAGAATTCAAAGTAAAGATCAATGCTTTAGTAG
CAACAGCACAGAAAGTGCCTGAGGATGGTTGGACTATGCAAGACGGTACACCTTGGCCCGGTAA
TAGTGTGCGAGATCATCCTGGCATGATTCAGGTGAGTTTCAAATGCTTCTTATTTCTGAAAAGC
CTTCTTATGTGTTGTCCTTCAAAATTTAATTATACTTTGTTTTCTTGTTAAAGGTCTTCCTTGG
AAGTGACGGTGTTCGTGATGTCGAAAACAACGAGTTGCCTCGATTAGTTTACGTTTCTCGTGAG
AAGAGACCCGGATTTGATCACCATAAGAAGGCTGGAGCTATGAATTCCCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.220118154
Functional Information
Coding potential Y
Potential coding position 25882421-25884189(+)
Potential amino acid sequence MSISRRNSGFPQSDLDSAPPGSQIPLLTYGDEDVEISSDRHALIVPPSLGGHGNRVHPVSLSDP
TVAAHPRPMVPQKDLAVYGYGSVAWKDRMEEWKRKQNEKLQVVRHEGDPDFEDGDDADFPMMDE
GRQPLSRKIPIKSSKINPYRMLIVLRLVILGLFFHYRILHPVKDAYALWLISVICEIWFAVSWV
LDQFPKWYPIERETYLDRLSLRYEKEGKPSGLSPVDVFVSTVDPLKEPPLITANTVLSILAVDY
PVDKVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYCIEPRAPEWYFCHKMDYLKNKVHPA
FVRERRAMKRDYEEFKVKINALVATAQKVPEDGWTMQDGTPWPGNSVRDHPGMIQVFLGSDGVR
DVENNELPRLVYVSREKRPGFDHHKKAGAMNSLIRSVQELSGQTCQICRDEIELTVDGEPFVAC
NECAFPVCRPCYEYERREGNQACPQCKTRFKRLKGSPRVEGDEEEDDIDDLDNEFEYGNNGIGF
DQVSEGMSISRRNSGFPQSDLDSAPPGSQIPLLTYGDEDVEISSDRHALIVPPSLGGHGNRVHP
VSLSDPTVAAHPRPMVPQKDLAVYGYGSVAWKDRMEEWKRKQNEKLQVVRHEGDPDFEDGDDAD
FPMMDEGRQPLSRKIPIKSSKINPYRMLIVLRLVILGLFFHYRILHPVKDAYALWLISVICEIW
FAVSWVLDQFPKWYPIERETYLDRLSLRYEKEGKPSGLSPVDVFVSTVDPLKEPPLITANTVLS
ILAVDYPVDKVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYCIEPRAPEWYFCHKMDYLK
NKVHPAFVRERRAMKRDYEEFKVKINALVATAQKVPEDGWTMQDGTPWPGNSVRDHPGMIQVFL
GSDGVRDVENNELPRLVYVSREKRPGFDHHKKAGAMNSLIRSVQELSGQTCQICRDEIELTVDG
EPFVACNECAFPVCRPCYEYERREGNQACPQCKTRFKRLKGSPRVEGDEEEDDIDDLDNEFEYG
NNGIGFDQVSEGMSISRRNSGFPQSDLDSAPPGSQIPLLTYGDEDVEISSDRHALIVPPSLGGH
GNRVHPVSLSDPTVAAHPRPMVPQKDLAVYGYGSVAWKDRMEEWKRKQNEKLQVVRHEGDPDFE
DGDDADFPMMDEGRQPLSRKIPIKSSKINPYRMLIVLRLVILGLFFHYRILHPVKDAYALWLIS
VICEIWFAVSWVLDQFPKWYPIERETYLDRLSLRYEKEGKPSGLSPVDVFVSTVDPLKEPPLIT
ANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYCIEPRAPEWYFCH
KMDYLKNKVHPAFVRERRAMKRDYEEFKVKINALVATAQKVPEDGWTMQDGTPWPGNSVRDHPG
MIQVFLGSDGVRDVENNELPRLVYVSREKRPGFDHHKKAGAMNSLIRSVQELSGQTCQICRDEI
ELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRFKRLKGSPRVEGDEEEDDIDDLD
NEFEYGNNGIGFDQVSEGMSISRRNSGFPQSDLDSAPPGSQIPLLTYGDEDVEISSDRHALIVP
PSLGGHGNRVHPVSLSDPTVAAHPRPMVPQKDLAVYGYGSVAWKDRMEEWKRKQNEKLQVVRHE
GDPDFEDGDDADFPMMDEGRQPLSRKIPIKSSKINPYRMLIVLRLVILGLFFHYRILHPVKDAY
ALWLISVICEIWFAVSWVLDQFPKWYPIERETYLDRLSLRYEKEGKPSGLSPVDVFVSTVDPLK
EPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYCIEPRAP
EWYFCHKMDYLKNKVHPAFVRERRAMKRDYEEFKVKINALVATAQKVPEDGWTMQDGTPWPGNS
VRDHPGMIQVFLGSDGVRDVENNELPRLVYVSREKRPGFDHHKKAGAMNSL(+)
Sponge-miRNAs ath-miR414
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a