Detail information of BGIOSGA000905_circ_igg.3


General Information
CircRNA Name BGIOSGA000905_circ_igg.3
ID in PlantcircBase osi_circ_000120
Alias NA
Organism Oryza sativa ssp. indica
Position chr1: 33192748-33193421  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method DCC
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA000905_circ_igg.1 BGIOSGA000905_circ_igg.2 BGIOSGA000905_circ_g.1 BGIOSGA000905_circ_g.2 BGIOSGA000905_circ_g.3 BGIOSGA000905_circ_g.4 BGIOSGA000905_circ_igg.5
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   TG-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACTTACTGGCAGTGCTCCTCCATTTCTCGCAAGCACTTGACATGAATGGTATGACCACAGGGC
AAGACGGAAACATCATTGGTTGATTCAAAAAGGTACaaatgaatcacatcaaaacttcgccact
tcagatctggcgggtgttgtaggacttgcacttctggcacttgtgcgcaatcaaatggaactgc
acctctga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAATGAATCACATCAAAACTTCGCCACTTCAGATCTGGCGGGTGTTGTAGGACTTGCACTTCTG
GCACTTGTGCGCAATCAAATGGAACTGCACCTCTGATGTTGCCCCACAATCGTTGCACAATATG
CGCACCTTCAGGGTAATGCAAAGGAACCAAATTAGCAAGTGTCAACAAACTCAACATTTGGATG
AAATTCGGGCAGGTAAGACTCAGATTTCTGACATGAGGCAAATACAATTCTCCATGATACTTCA
AGTTACTTTATCGACATGCCTAAGGGCAAGCATATGATAGCATATTGGTGTAGAAGTTAGAACA
CCTTTCTACAACATTCGATGGTTTCCTTAGTTCCTACTGACAACAGAAGAGCAGAGAAGAGAGC
ATTACCATTTTATTGTCACAGGTGTCAGATATCGTTGCTAGTTCCTCGTCCAATCTCTCCCATG
CCTTCGACATGTCGCAGACAGATTTAGAGCAAAGCGGGCAAGCAAATCTGAGCATCAATTTTAA
GCTGTCAAAATCAACCACTCATAATATCATTACAAATAGTAAACAAAGGGCCAAGAAGGATTGA
CTTACTGGCAGTGCTCCTCCATTTCTCGCAAGCACTTGACATGAATGGTATGACCACAGGGCAA
GACGGAAACATCATTGGTTGATTCAAAAAGGTAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019